Wall clock time and date at job start Wed Apr 1 2020 06:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46917 * 2 1 4 4 N 1.46500 * 109.47166 * 239.99971 * 2 1 3 5 5 C 1.36937 * 119.99837 * 84.99730 * 4 2 1 6 6 H 1.08009 * 119.99903 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00245 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00589 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99726 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47462 * 89.99623 * 9 7 5 11 11 H 1.48500 * 109.47116 * 209.99773 * 9 7 5 12 12 H 1.48503 * 109.47187 * 329.99311 * 9 7 5 13 13 C 1.53003 * 109.47197 * 120.00198 * 2 1 3 14 14 H 1.08997 * 110.88692 * 56.90971 * 13 2 1 15 15 C 1.55153 * 111.00310 * 180.79798 * 13 2 1 16 16 C 1.54318 * 102.94564 * 153.61389 * 15 13 2 17 17 N 1.47027 * 107.26933 * 337.80419 * 16 15 13 18 18 C 1.34777 * 125.64945 * 178.90637 * 17 16 15 19 19 O 1.21610 * 120.00227 * 180.02562 * 18 17 16 20 20 C 1.47424 * 119.99757 * 0.02562 * 18 17 16 21 21 C 1.36088 * 126.44607 * 180.02562 * 20 18 17 22 22 O 1.34256 * 106.95094 * 180.02562 * 21 20 18 23 23 C 1.34051 * 108.22718 * 359.97438 * 22 21 20 24 24 C 1.50693 * 125.38088 * 180.02562 * 23 22 21 25 25 F 1.39904 * 109.47046 * 270.02219 * 24 23 22 26 26 F 1.39897 * 109.47124 * 30.02213 * 24 23 22 27 27 F 1.39902 * 109.47390 * 150.02674 * 24 23 22 28 28 N 1.29939 * 109.24102 * 0.26668 * 23 22 21 29 29 C 1.47422 * 108.69920 * 359.16722 * 17 16 15 30 30 H 1.09001 * 109.47062 * 185.27093 * 1 2 3 31 31 H 1.09003 * 109.47419 * 305.26878 * 1 2 3 32 32 H 1.09001 * 109.47314 * 65.26987 * 1 2 3 33 33 H 0.96997 * 120.00551 * 264.99894 * 4 2 1 34 34 H 0.97002 * 120.00712 * 180.02562 * 8 7 5 35 35 H 1.09000 * 110.72465 * 35.24232 * 15 13 2 36 36 H 1.09002 * 110.86904 * 272.04482 * 15 13 2 37 37 H 1.09001 * 109.88652 * 218.38957 * 16 15 13 38 38 H 1.09007 * 110.01485 * 97.29095 * 16 15 13 39 39 H 1.08002 * 126.52790 * 359.96825 * 21 20 18 40 40 H 1.09012 * 110.36282 * 142.74421 * 29 17 16 41 41 H 1.08998 * 110.36943 * 265.05950 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0406 -2.4241 7 6 2.6123 -0.6616 -3.5090 8 7 2.7374 -0.0052 -4.6429 9 14 3.0566 -2.4741 -3.4251 10 1 1.8596 -3.2926 -3.7450 11 1 4.1324 -2.7659 -4.4063 12 1 3.5313 -2.8046 -2.0574 13 6 2.0400 -0.7213 1.2492 14 1 1.6454 -1.7360 1.3004 15 6 3.5909 -0.7246 1.2953 16 6 3.8917 -0.8273 2.8053 17 7 2.7018 -0.3443 3.5213 18 6 2.5574 -0.2939 4.8603 19 8 1.5241 0.1260 5.3451 20 6 3.6521 -0.7477 5.7374 21 6 3.6475 -0.7551 7.0982 22 8 4.8350 -1.2429 7.4910 23 6 5.5534 -1.5295 6.3962 24 6 6.9481 -2.1001 6.3924 25 9 7.8792 -1.0559 6.3999 26 9 7.1298 -2.8950 7.5291 27 9 7.1304 -2.8790 5.2446 28 7 4.8591 -1.2329 5.3386 29 6 1.6905 0.0698 2.5318 30 1 -0.3633 -1.0233 0.0944 31 1 -0.3634 0.5934 0.8390 32 1 -0.3634 0.4299 -0.9334 33 1 2.2491 -1.6317 -1.1527 34 1 3.0608 -0.4624 -5.4350 35 1 3.9909 0.2024 0.8845 36 1 3.9933 -1.5861 0.7624 37 1 4.7520 -0.2064 3.0551 38 1 4.0918 -1.8641 3.0762 39 1 2.8422 -0.4296 7.7401 40 1 0.6908 -0.1919 2.8789 41 1 1.7595 1.1413 2.3445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699938933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:56 Heat of formation + Delta-G solvation = -131.582647 kcal Electronic energy + Delta-G solvation = -30607.120979 eV Core-core repulsion = 25689.045418 eV Total energy + Delta-G solvation = -4918.075561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.91665 -48.44911 -48.40432 -44.33119 -40.16750 -38.02096 -35.85397 -35.35597 -32.50568 -32.02880 -30.73373 -29.70942 -27.90281 -27.43277 -25.47616 -23.91644 -22.87012 -22.60373 -21.40425 -20.59441 -19.88875 -19.40139 -19.14283 -18.80447 -17.89288 -17.56111 -17.45059 -16.97272 -16.28327 -15.65994 -15.21681 -15.20040 -15.00856 -14.79309 -14.51392 -14.50602 -14.47163 -14.30377 -13.76016 -13.67988 -13.54146 -13.23200 -12.88378 -12.71697 -12.51398 -12.28981 -12.19727 -11.97641 -11.73661 -11.44256 -11.03047 -10.82559 -10.59617 -10.52694 -10.45568 -10.25667 -10.08025 -9.96101 -9.60034 -8.95996 -8.78125 -7.29738 -5.78375 -3.14096 0.22245 0.90719 1.04998 2.00925 2.55284 2.71110 2.82400 3.35367 3.38624 3.42979 3.44545 3.50743 3.84564 4.03425 4.46416 4.57353 4.63905 4.71989 4.77769 4.98945 4.99265 5.30926 5.43555 5.50333 5.59500 5.63765 5.81637 5.86647 5.93501 6.03685 6.11769 6.24488 6.31168 6.41124 6.45481 6.49446 6.76013 6.99217 7.25014 7.76468 7.97583 8.40508 9.18924 9.91370 10.11024 11.40005 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.002678 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.486058 B =10454.732505 C =12017.430416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.081 0.919 15 C -0.120 4.120 16 C 0.106 3.894 17 N -0.595 5.595 18 C 0.612 3.388 19 O -0.535 6.535 20 C -0.060 4.060 21 C 0.055 3.945 22 O -0.167 6.167 23 C 0.091 3.909 24 C 0.587 3.413 25 F -0.152 7.152 26 F -0.156 7.156 27 F -0.140 7.140 28 N -0.384 5.384 29 C 0.115 3.885 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.248 0.752 40 H 0.082 0.918 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -3.884 27.788 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.714 3.286 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.127 4.127 14 H 0.099 0.901 15 C -0.158 4.158 16 C -0.017 4.017 17 N -0.327 5.327 18 C 0.399 3.601 19 O -0.413 6.413 20 C -0.182 4.182 21 C -0.019 4.019 22 O -0.051 6.051 23 C -0.119 4.119 24 C 0.531 3.469 25 F -0.133 7.133 26 F -0.137 7.137 27 F -0.121 7.121 28 N -0.115 5.115 29 C -0.007 4.007 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.095 -3.577 27.323 28.222 hybrid contribution 0.314 -1.355 0.536 1.490 sum 6.409 -4.932 27.859 29.009 Atomic orbital electron populations 1.22468 0.98675 1.00653 1.01065 1.20094 0.91994 0.95453 0.84355 0.92341 1.42723 1.79756 1.09443 1.06957 1.19044 1.36918 0.95598 0.85505 0.89203 1.24655 1.01459 0.97412 0.95561 1.69694 1.52685 1.35578 1.00263 0.86571 0.78101 0.86923 0.77012 1.21210 1.21831 1.20291 1.22701 0.95672 1.00058 0.94306 0.90111 1.22655 0.95881 1.04352 0.92943 1.22258 0.87032 1.00068 0.92303 1.48326 1.18545 1.61590 1.04191 1.16129 0.84545 0.78814 0.80628 1.90857 1.27855 1.48195 1.74430 1.21979 0.94181 1.08922 0.93157 1.25745 0.85864 0.94418 0.95881 1.84408 1.24158 1.60750 1.35756 1.25539 0.96995 1.08323 0.81052 1.15964 0.79834 0.75989 0.75094 1.93334 1.66349 1.57509 1.96114 1.93307 1.95478 1.74248 1.50684 1.93348 1.95052 1.74391 1.49261 1.70854 1.02786 1.09528 1.28380 1.22354 0.91833 0.99539 0.86926 0.93661 0.94033 0.92008 0.80685 0.93065 0.89749 0.89759 0.90853 0.90874 0.73583 0.89996 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.27 37.16 0.34 -2.42 16 2 C 0.19 3.34 2.41 -67.93 -0.16 3.18 16 3 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 4 N -0.75 -16.44 4.60 -53.42 -0.25 -16.69 16 5 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 6 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 7 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -28.82 13.97 55.49 0.78 -28.04 16 9 Si 0.88 21.54 27.74 -169.99 -4.71 16.82 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 13 C -0.11 -1.54 2.61 -88.59 -0.23 -1.77 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.12 -1.66 6.12 -24.90 -0.15 -1.82 16 16 C 0.11 1.30 5.53 -3.06 -0.02 1.28 16 17 N -0.60 -7.71 3.33 -171.92 -0.57 -8.28 16 18 C 0.61 7.91 7.85 -12.52 -0.10 7.82 16 19 O -0.54 -7.94 17.15 5.27 0.09 -7.85 16 20 C -0.06 -0.63 6.83 -83.02 -0.57 -1.20 16 21 C 0.06 0.40 11.94 29.96 0.36 0.76 16 22 O -0.17 -1.30 10.70 6.51 0.07 -1.24 16 23 C 0.09 0.82 7.53 -13.08 -0.10 0.72 16 24 C 0.59 4.61 3.57 36.00 0.13 4.74 16 25 F -0.15 -1.21 17.30 2.25 0.04 -1.17 16 26 F -0.16 -1.14 17.28 2.25 0.04 -1.10 16 27 F -0.14 -1.21 17.24 2.25 0.04 -1.17 16 28 N -0.38 -4.10 8.74 -7.66 -0.07 -4.17 16 29 C 0.12 1.51 5.67 -2.65 -0.02 1.49 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.57 7.70 -51.93 -0.40 0.17 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.36 7.86 5.66 -40.82 -0.23 7.63 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.88 7.74 -51.93 -0.40 0.48 16 38 H 0.07 0.88 7.63 -51.92 -0.40 0.49 16 39 H 0.25 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.08 1.07 8.04 -51.92 -0.42 0.65 16 41 H 0.08 0.99 7.99 -51.93 -0.42 0.57 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -31.98 361.83 -4.66 -36.64 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.80 Total: 4.61 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.76 Total: 6.18 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.11 Total: -57.18 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.16 Total: -9.09 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.12 Total: -3.44 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.98 -4.66 -36.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699938933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.942 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds