Wall clock time and date at job start Wed Apr 1 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 110.28740 * 2 1 4 4 C 1.53999 * 110.32610 * 237.87099 * 2 1 3 5 5 N 1.47490 * 107.08258 * 239.80098 * 4 2 1 6 6 C 1.34777 * 127.03567 * 205.41653 * 5 4 2 7 7 O 1.21613 * 119.99939 * 180.02562 * 6 5 4 8 8 C 1.47417 * 119.99886 * 0.02562 * 6 5 4 9 9 N 1.36065 * 126.44893 * 359.69071 * 8 6 5 10 10 C 1.29934 * 108.47727 * 179.82695 * 9 8 6 11 11 O 1.34054 * 109.24414 * 0.44133 * 10 9 8 12 12 C 1.34251 * 108.22294 * 359.72685 * 11 10 9 13 13 C 1.50702 * 126.52322 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.46972 * 269.96997 * 13 12 11 15 15 F 1.39900 * 109.47390 * 29.97239 * 13 12 11 16 16 F 1.39902 * 109.47349 * 149.97307 * 13 12 11 17 17 C 1.48119 * 105.93273 * 25.44426 * 5 4 2 18 18 C 1.54612 * 110.32886 * 122.24584 * 2 1 3 19 19 H 1.08993 * 110.74169 * 215.38639 * 18 2 1 20 20 C 1.53003 * 110.73733 * 338.70760 * 18 2 1 21 21 N 1.46507 * 109.47020 * 184.99928 * 20 18 2 22 22 C 1.36940 * 119.99763 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99918 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99808 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99835 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00132 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47134 * 59.99933 * 26 24 22 28 28 H 1.48497 * 109.47179 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46799 * 300.00248 * 26 24 22 30 30 H 1.09001 * 109.47002 * 180.67641 * 1 2 3 31 31 H 1.08993 * 109.46955 * 300.68078 * 1 2 3 32 32 H 1.09000 * 109.47050 * 60.67907 * 1 2 3 33 33 H 1.08999 * 109.91828 * 359.16068 * 4 2 1 34 34 H 1.08997 * 109.91456 * 120.25234 * 4 2 1 35 35 H 1.08007 * 125.38093 * 180.16410 * 10 9 8 36 36 H 1.08999 * 110.65764 * 79.15342 * 17 5 4 37 37 H 1.08996 * 110.66532 * 202.10084 * 17 5 4 38 38 H 1.08997 * 109.47354 * 304.99892 * 20 18 2 39 39 H 1.09000 * 109.47247 * 64.99996 * 20 18 2 40 40 H 0.96997 * 119.99736 * 0.02562 * 21 20 18 41 41 H 0.97000 * 119.99749 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7680 -1.2229 5 7 2.8805 -1.8850 -0.7104 6 6 3.8916 -2.5101 -1.3454 7 8 4.4808 -3.4230 -0.7991 8 6 4.2833 -2.0873 -2.7023 9 7 3.7140 -1.0918 -3.4347 10 6 4.3320 -1.0146 -4.5750 11 8 5.2953 -1.9458 -4.6195 12 6 5.2784 -2.6231 -3.4605 13 6 6.1886 -3.7597 -3.0725 14 9 5.6143 -4.9727 -3.4675 15 9 7.4268 -3.6023 -3.7044 16 9 6.3698 -3.7595 -1.6852 17 6 2.3605 -2.1795 0.6449 18 6 2.0672 -0.7736 1.2262 19 1 2.9805 -0.3134 1.6031 20 6 1.0052 -0.8523 2.3248 21 7 1.5800 -1.4838 3.5153 22 6 0.8112 -1.6624 4.6344 23 1 -0.2190 -1.3381 4.6392 24 6 1.3557 -2.2612 5.7621 25 7 2.6110 -2.6569 5.7560 26 14 0.3068 -2.5056 7.2884 27 1 -0.8598 -3.3619 6.9554 28 1 1.1170 -3.1615 8.3460 29 1 -0.1704 -1.1871 7.7772 30 1 -0.3633 -1.0276 0.0121 31 1 -0.3633 0.5243 0.8838 32 1 -0.3633 0.5033 -0.8960 33 1 1.2331 -1.1552 -1.8113 34 1 2.6781 -0.1081 -1.8367 35 1 4.1027 -0.3140 -5.3644 36 1 1.4461 -2.7699 0.5860 37 1 3.1124 -2.6960 1.2415 38 1 0.6658 0.1529 2.5748 39 1 0.1604 -1.4437 1.9719 40 1 2.5054 -1.7747 3.5110 41 1 2.9916 -3.0750 6.5442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699966127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:53 Heat of formation + Delta-G solvation = -125.200352 kcal Electronic energy + Delta-G solvation = -31261.744662 eV Core-core repulsion = 26343.945858 eV Total energy + Delta-G solvation = -4917.798804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = -0.04 seconds Orbital eigenvalues (eV) -50.45462 -48.03461 -47.85341 -44.18889 -40.12177 -38.10500 -35.63329 -34.63458 -32.89323 -32.05246 -31.15089 -29.16299 -27.27701 -26.37225 -25.45989 -24.28898 -23.25073 -22.52012 -21.86215 -20.39643 -19.16709 -18.96009 -18.86855 -18.54733 -17.83520 -17.34251 -16.85422 -16.59328 -15.92462 -15.58881 -15.03786 -14.93589 -14.78672 -14.63475 -14.47958 -14.34756 -14.07453 -14.00932 -13.83332 -13.56416 -13.37879 -13.01967 -12.91869 -12.44864 -12.34426 -12.26993 -11.98911 -11.88016 -11.77403 -11.22510 -10.94415 -10.81347 -10.47173 -10.41214 -10.23999 -10.19660 -10.04218 -9.96086 -9.65407 -8.84941 -8.67955 -6.89935 -5.73048 -3.02520 0.12435 1.22024 1.44563 2.51880 2.64541 2.92666 3.23836 3.41085 3.46255 3.50458 3.51953 3.82493 3.93204 4.09191 4.46863 4.60666 4.66947 4.78710 4.84822 4.94789 5.20700 5.38500 5.49955 5.58272 5.61745 5.65765 5.85718 5.90650 5.97058 6.08453 6.13978 6.17870 6.29923 6.40693 6.48635 6.64747 6.72753 6.85728 7.42093 7.71591 7.90736 8.45172 9.56192 10.13627 10.47750 11.49483 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002740 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.063782 B =10215.511374 C =11689.873061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.082 0.918 4 C 0.105 3.895 5 N -0.597 5.597 6 C 0.597 3.403 7 O -0.509 6.509 8 C 0.030 3.970 9 N -0.461 5.461 10 C 0.218 3.782 11 O -0.171 6.171 12 C -0.087 4.087 13 C 0.564 3.436 14 F -0.160 7.160 15 F -0.169 7.169 16 F -0.121 7.121 17 C 0.116 3.884 18 C -0.103 4.103 19 H 0.083 0.917 20 C 0.165 3.835 21 N -0.734 5.734 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.269 0.731 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.384 0.616 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 5.161 -26.690 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.100 0.900 4 C -0.018 4.018 5 N -0.329 5.329 6 C 0.382 3.618 7 O -0.384 6.384 8 C -0.092 4.092 9 N -0.189 5.189 10 C -0.009 4.009 11 O -0.057 6.057 12 C -0.145 4.145 13 C 0.508 3.492 14 F -0.141 7.141 15 F -0.150 7.150 16 F -0.102 7.102 17 C -0.005 4.005 18 C -0.123 4.123 19 H 0.102 0.898 20 C 0.038 3.962 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.285 0.715 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.217 0.783 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.551 4.952 -26.138 26.839 hybrid contribution 0.318 -0.548 0.442 0.772 sum 3.869 4.404 -25.696 26.356 Atomic orbital electron populations 1.21899 0.93999 1.02405 1.01868 1.22077 0.96666 0.99369 0.93865 0.89957 1.22454 0.94789 0.88182 0.96391 1.48575 1.31615 1.34270 1.18412 1.16261 0.80295 0.82831 0.82375 1.90989 1.52762 1.28956 1.65729 1.21858 0.94831 0.95145 0.97366 1.71080 1.26689 1.17395 1.03784 1.28596 0.83680 0.91065 0.97606 1.84380 1.48613 1.38761 1.33944 1.23173 1.03138 1.00453 0.87752 1.16490 0.76998 0.78914 0.76780 1.93286 1.84425 1.45616 1.90747 1.93257 1.44016 1.95433 1.82313 1.93487 1.94635 1.96056 1.26002 1.22697 0.99790 0.97686 0.80292 1.22530 1.00506 0.94320 0.94932 0.89845 1.20709 0.93250 0.96166 0.86114 1.42409 1.13045 1.72113 1.10283 1.19153 0.94409 1.32883 0.90878 0.91246 1.24748 0.96277 1.01538 0.98301 1.69653 1.12467 1.46278 1.29560 0.86277 0.79238 0.77711 0.82992 1.21275 1.21709 1.21320 0.92186 0.91380 0.92992 0.91329 0.88967 0.71530 0.90227 0.88896 0.95791 0.95668 0.78260 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.79 37.16 0.29 -1.28 16 2 C -0.10 -1.19 3.53 -89.25 -0.31 -1.51 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.10 1.21 5.92 -2.98 -0.02 1.19 16 5 N -0.60 -8.72 3.29 -171.03 -0.56 -9.28 16 6 C 0.60 9.28 7.83 -12.52 -0.10 9.18 16 7 O -0.51 -9.39 13.35 5.27 0.07 -9.32 16 8 C 0.03 0.38 6.80 -83.02 -0.56 -0.19 16 9 N -0.46 -4.34 8.55 -11.48 -0.10 -4.44 16 10 C 0.22 1.22 13.19 51.96 0.69 1.90 16 11 O -0.17 -1.42 10.72 6.51 0.07 -1.35 16 12 C -0.09 -0.99 6.75 -35.08 -0.24 -1.23 16 13 C 0.56 6.87 3.34 36.01 0.12 6.99 16 14 F -0.16 -1.98 17.30 2.25 0.04 -1.94 16 15 F -0.17 -1.86 17.30 2.25 0.04 -1.82 16 16 F -0.12 -1.79 13.48 2.25 0.03 -1.76 16 17 C 0.12 1.90 6.45 -2.13 -0.01 1.89 16 18 C -0.10 -1.62 3.01 -88.75 -0.27 -1.89 16 19 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 20 C 0.17 3.15 4.44 -4.04 -0.02 3.13 16 21 N -0.73 -18.35 5.52 -59.90 -0.33 -18.68 16 22 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 26 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 31 H 0.07 0.79 6.76 -51.93 -0.35 0.44 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 34 H 0.09 0.99 6.16 -51.93 -0.32 0.67 16 35 H 0.27 -0.17 8.06 -52.48 -0.42 -0.59 16 36 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 37 H 0.09 1.76 7.85 -51.93 -0.41 1.36 16 38 H 0.02 0.46 7.37 -51.93 -0.38 0.08 16 39 H 0.03 0.48 6.80 -51.93 -0.35 0.13 16 40 H 0.38 10.22 7.67 -40.82 -0.31 9.91 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -34.02 352.35 -4.98 -38.99 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.56 Total: 3.68 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -0.68 Total: 10.85 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.27 Total: -60.13 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.14 Total: -10.66 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.11 Total: -5.52 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.02 -4.98 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699966127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.205 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.04 seconds