Wall clock time and date at job start Wed Apr 1 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 110.28740 * 2 1 4 4 C 1.53999 * 110.32610 * 237.87099 * 2 1 3 5 5 N 1.47490 * 107.08258 * 239.80098 * 4 2 1 6 6 C 1.34777 * 127.03567 * 205.41653 * 5 4 2 7 7 O 1.21613 * 119.99939 * 180.02562 * 6 5 4 8 8 C 1.47417 * 119.99886 * 0.02562 * 6 5 4 9 9 N 1.36065 * 126.44893 * 359.69071 * 8 6 5 10 10 C 1.29934 * 108.47727 * 179.82695 * 9 8 6 11 11 O 1.34054 * 109.24414 * 0.44133 * 10 9 8 12 12 C 1.34251 * 108.22294 * 359.72685 * 11 10 9 13 13 C 1.50702 * 126.52322 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.46972 * 269.96997 * 13 12 11 15 15 F 1.39900 * 109.47390 * 29.97239 * 13 12 11 16 16 F 1.39902 * 109.47349 * 149.97307 * 13 12 11 17 17 C 1.48119 * 105.93273 * 25.44426 * 5 4 2 18 18 C 1.54612 * 110.32886 * 122.24584 * 2 1 3 19 19 H 1.08993 * 110.74169 * 215.38639 * 18 2 1 20 20 C 1.53003 * 110.73733 * 338.70760 * 18 2 1 21 21 N 1.46507 * 109.47020 * 184.99928 * 20 18 2 22 22 C 1.36940 * 119.99763 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99918 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99808 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99835 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00132 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47134 * 59.99933 * 26 24 22 28 28 H 1.48497 * 109.47179 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46799 * 300.00248 * 26 24 22 30 30 H 1.09001 * 109.47002 * 180.67641 * 1 2 3 31 31 H 1.08993 * 109.46955 * 300.68078 * 1 2 3 32 32 H 1.09000 * 109.47050 * 60.67907 * 1 2 3 33 33 H 1.08999 * 109.91828 * 359.16068 * 4 2 1 34 34 H 1.08997 * 109.91456 * 120.25234 * 4 2 1 35 35 H 1.08007 * 125.38093 * 180.16410 * 10 9 8 36 36 H 1.08999 * 110.65764 * 79.15342 * 17 5 4 37 37 H 1.08996 * 110.66532 * 202.10084 * 17 5 4 38 38 H 1.08997 * 109.47354 * 304.99892 * 20 18 2 39 39 H 1.09000 * 109.47247 * 64.99996 * 20 18 2 40 40 H 0.96997 * 119.99736 * 0.02562 * 21 20 18 41 41 H 0.97000 * 119.99749 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7680 -1.2229 5 7 2.8805 -1.8850 -0.7104 6 6 3.8916 -2.5101 -1.3454 7 8 4.4808 -3.4230 -0.7991 8 6 4.2833 -2.0873 -2.7023 9 7 3.7140 -1.0918 -3.4347 10 6 4.3320 -1.0146 -4.5750 11 8 5.2953 -1.9458 -4.6195 12 6 5.2784 -2.6231 -3.4605 13 6 6.1886 -3.7597 -3.0725 14 9 5.6143 -4.9727 -3.4675 15 9 7.4268 -3.6023 -3.7044 16 9 6.3698 -3.7595 -1.6852 17 6 2.3605 -2.1795 0.6449 18 6 2.0672 -0.7736 1.2262 19 1 2.9805 -0.3134 1.6031 20 6 1.0052 -0.8523 2.3248 21 7 1.5800 -1.4838 3.5153 22 6 0.8112 -1.6624 4.6344 23 1 -0.2190 -1.3381 4.6392 24 6 1.3557 -2.2612 5.7621 25 7 2.6110 -2.6569 5.7560 26 14 0.3068 -2.5056 7.2884 27 1 -0.8598 -3.3619 6.9554 28 1 1.1170 -3.1615 8.3460 29 1 -0.1704 -1.1871 7.7772 30 1 -0.3633 -1.0276 0.0121 31 1 -0.3633 0.5243 0.8838 32 1 -0.3633 0.5033 -0.8960 33 1 1.2331 -1.1552 -1.8113 34 1 2.6781 -0.1081 -1.8367 35 1 4.1027 -0.3140 -5.3644 36 1 1.4461 -2.7699 0.5860 37 1 3.1124 -2.6960 1.2415 38 1 0.6658 0.1529 2.5748 39 1 0.1604 -1.4437 1.9719 40 1 2.5054 -1.7747 3.5110 41 1 2.9916 -3.0750 6.5442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699966127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:44 Heat of formation + Delta-G solvation = -150.238400 kcal Electronic energy + Delta-G solvation = -31262.830393 eV Core-core repulsion = 26343.945858 eV Total energy + Delta-G solvation = -4918.884535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 8.35 seconds Orbital eigenvalues (eV) -51.41913 -48.96752 -48.87810 -44.88344 -41.29565 -39.33558 -36.56421 -36.22589 -34.31115 -32.85568 -32.84798 -30.64040 -28.42651 -27.29647 -26.86838 -25.49119 -24.52769 -23.52151 -23.17027 -21.33737 -20.38876 -19.92450 -19.86601 -19.53019 -19.15081 -18.49431 -18.08226 -17.46794 -17.19403 -16.57896 -16.51675 -16.12086 -15.85005 -15.74367 -15.37218 -15.34218 -15.30922 -15.22853 -15.06078 -15.01811 -14.72818 -14.38236 -13.96903 -13.79782 -13.52422 -13.48391 -13.12094 -12.96057 -12.79504 -12.73585 -12.70804 -12.26887 -12.07379 -11.83773 -11.66691 -11.51037 -11.36073 -11.27999 -10.87631 -10.83666 -9.86160 -8.97458 -7.92685 -5.22004 -0.71332 0.43647 0.79511 1.47794 1.51176 1.52679 1.57401 1.72745 1.85223 2.42546 2.57424 2.69360 2.93532 2.97651 3.23239 3.40469 3.52299 3.59111 3.74706 3.85593 4.08441 4.16292 4.25560 4.36636 4.53929 4.57955 4.69981 4.77697 4.82588 4.86313 4.95103 5.02752 5.17210 5.23449 5.26885 5.39482 5.52133 5.56330 5.97041 6.28671 6.29966 6.74376 7.34648 8.11524 8.32943 9.30811 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002740 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.063782 B =10215.511374 C =11689.873061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.102 0.898 4 C 0.109 3.891 5 N -0.597 5.597 6 C 0.587 3.413 7 O -0.552 6.552 8 C 0.019 3.981 9 N -0.483 5.483 10 C 0.258 3.742 11 O -0.166 6.166 12 C -0.094 4.094 13 C 0.562 3.438 14 F -0.164 7.164 15 F -0.162 7.162 16 F -0.142 7.142 17 C 0.120 3.880 18 C -0.096 4.096 19 H 0.067 0.933 20 C 0.168 3.832 21 N -0.750 5.750 22 C -0.243 4.243 23 H 0.080 0.920 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.974 3.026 27 H -0.277 1.277 28 H -0.299 1.299 29 H -0.275 1.275 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.332 0.668 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.370 0.630 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 7.474 -29.541 30.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.120 0.880 4 C -0.012 4.012 5 N -0.329 5.329 6 C 0.374 3.626 7 O -0.430 6.430 8 C -0.102 4.102 9 N -0.211 5.211 10 C 0.032 3.968 11 O -0.052 6.052 12 C -0.152 4.152 13 C 0.506 3.494 14 F -0.145 7.145 15 F -0.144 7.144 16 F -0.123 7.123 17 C -0.002 4.002 18 C -0.116 4.116 19 H 0.086 0.914 20 C 0.041 3.959 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.271 4.271 25 N -0.623 5.623 26 Si 0.803 3.197 27 H -0.203 1.203 28 H -0.225 1.225 29 H -0.201 1.201 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.346 0.654 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.202 0.798 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.820 7.320 -29.033 29.997 hybrid contribution 0.821 -1.196 1.170 1.864 sum 2.641 6.124 -27.863 28.650 Atomic orbital electron populations 1.21887 0.92771 1.02173 1.03094 1.22087 0.97556 0.99679 0.91479 0.88010 1.22624 0.95013 0.87301 0.96272 1.48639 1.31741 1.34917 1.17557 1.16766 0.79862 0.82336 0.83600 1.90961 1.54067 1.30817 1.67162 1.21366 0.95875 0.96768 0.96240 1.71033 1.27815 1.17141 1.05065 1.30057 0.80514 0.89114 0.97108 1.84429 1.49398 1.39033 1.32366 1.22789 1.02924 1.00674 0.88839 1.16571 0.77531 0.79357 0.75920 1.93269 1.84517 1.46110 1.90648 1.93262 1.43699 1.95410 1.81990 1.93442 1.94825 1.96203 1.27866 1.22448 0.98508 0.97866 0.81376 1.22359 0.99079 0.94503 0.95616 0.91440 1.20862 0.94148 0.95805 0.85041 1.42682 1.12444 1.72508 1.11582 1.19626 0.94964 1.31313 0.91612 0.90197 1.25607 0.97517 1.02320 1.01619 1.69836 1.14393 1.48009 1.30047 0.85198 0.77578 0.77918 0.78993 1.20298 1.22523 1.20136 0.93092 0.92084 0.89917 0.89770 0.87326 0.65355 0.90404 0.92742 0.94917 0.94887 0.79834 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 7.79 71.98 0.56 -2.11 16 2 C -0.09 -1.90 3.53 -9.91 -0.03 -1.94 16 3 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 4 C 0.11 2.27 5.92 86.53 0.51 2.78 16 5 N -0.60 -17.53 3.29 -813.26 -2.68 -20.21 16 6 C 0.59 18.75 7.83 86.66 0.68 19.43 16 7 O -0.55 -21.74 13.35 -4.07 -0.05 -21.80 16 8 C 0.02 0.46 6.80 40.41 0.27 0.73 16 9 N -0.48 -7.49 8.55 -305.14 -2.61 -10.10 16 10 C 0.26 1.65 13.19 130.52 1.72 3.37 16 11 O -0.17 -2.22 10.72 0.39 0.00 -2.21 16 12 C -0.09 -2.03 6.75 25.19 0.17 -1.86 16 13 C 0.56 13.96 3.34 71.24 0.24 14.19 16 14 F -0.16 -4.18 17.30 44.97 0.78 -3.40 16 15 F -0.16 -3.55 17.30 44.97 0.78 -2.77 16 16 F -0.14 -4.50 13.48 44.97 0.61 -3.89 16 17 C 0.12 4.11 6.45 86.73 0.56 4.67 16 18 C -0.10 -3.02 3.01 -9.58 -0.03 -3.05 16 19 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 20 C 0.17 6.37 4.44 86.38 0.38 6.75 16 21 N -0.75 -38.40 5.52 -343.43 -1.90 -40.29 16 22 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 23 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 24 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 25 N -0.97 -61.40 13.06 21.65 0.28 -61.12 16 26 Si 0.97 46.81 29.55 68.60 2.03 48.83 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 30 H 0.05 1.06 7.51 -2.39 -0.02 1.04 16 31 H 0.06 1.25 6.76 -2.39 -0.02 1.24 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.53 7.68 -2.39 -0.02 1.52 16 34 H 0.11 1.96 6.16 -2.39 -0.01 1.95 16 35 H 0.33 -2.82 8.06 -2.91 -0.02 -2.85 16 36 H 0.08 2.64 7.94 -2.39 -0.02 2.63 16 37 H 0.05 2.26 7.85 -2.39 -0.02 2.25 16 38 H 0.03 1.22 7.37 -2.39 -0.02 1.20 16 39 H 0.03 1.23 6.80 -2.39 -0.02 1.21 16 40 H 0.37 20.71 7.67 -92.71 -0.71 20.00 16 41 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -78.53 352.35 3.98 -74.55 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.40 Total: 16.39 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 6.34 Total: 26.02 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -6.90 Total: -131.72 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 9 Polarization: -12.23 SS G_CDS: 2.16 Total: -10.07 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -78.53 3.98 -74.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699966127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.687 kcal (2) G-P(sol) polarization free energy of solvation -78.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.36 seconds