Wall clock time and date at job start Wed Apr 1 2020 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.53006 * 109.46809 * 119.99419 * 2 1 3 5 5 C 1.53002 * 109.46791 * 185.00139 * 4 2 1 6 6 C 1.53007 * 109.46873 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47021 * 179.97438 * 6 5 4 8 8 C 1.36944 * 119.99851 * 179.97438 * 7 6 5 9 9 H 1.07996 * 119.99749 * 0.02562 * 8 7 6 10 10 C 1.38807 * 119.99979 * 179.97438 * 8 7 6 11 11 N 1.31623 * 120.00266 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00091 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47097 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47340 * 120.00632 * 12 10 8 15 15 H 1.48507 * 109.47426 * 240.00533 * 12 10 8 16 16 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 17 17 C 1.34784 * 119.99864 * 84.99998 * 16 2 1 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 2 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 2 20 20 H 1.09003 * 108.89338 * 41.36156 * 19 17 16 21 21 C 1.52794 * 108.91311 * 282.80995 * 19 17 16 22 22 S 1.81963 * 108.34461 * 186.94531 * 21 19 17 23 23 O 1.42102 * 108.81443 * 308.26347 * 22 21 19 24 24 O 1.42098 * 108.83584 * 176.54864 * 22 21 19 25 25 C 1.81769 * 100.35883 * 62.40144 * 22 21 19 26 26 C 1.50084 * 109.25346 * 315.03112 * 25 22 21 27 27 O 1.21287 * 116.82249 * 200.98057 * 26 25 22 28 28 N 1.31826 * 126.34512 * 20.95330 * 26 25 22 29 29 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 30 30 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 31 31 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47235 * 305.00318 * 4 2 1 33 33 H 1.09002 * 109.46653 * 65.00864 * 4 2 1 34 34 H 1.08997 * 109.47377 * 300.00092 * 5 4 2 35 35 H 1.08994 * 109.47204 * 60.00646 * 5 4 2 36 36 H 1.08997 * 109.46880 * 300.00011 * 6 5 4 37 37 H 1.09004 * 109.47100 * 59.99569 * 6 5 4 38 38 H 0.97001 * 119.99877 * 0.02562 * 7 6 5 39 39 H 0.96993 * 120.00431 * 179.97438 * 11 10 8 40 40 H 0.97000 * 120.00740 * 264.72691 * 16 2 1 41 41 H 1.09007 * 109.68623 * 306.66051 * 21 19 17 42 42 H 1.08995 * 109.68686 * 67.23031 * 21 19 17 43 43 H 1.08999 * 109.50958 * 195.09213 * 25 22 21 44 44 H 1.09001 * 109.54131 * 74.98085 * 25 22 21 45 45 H 0.96998 * 115.26585 * 174.26510 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3349 2.5629 7 7 5.5348 -1.2320 2.6243 8 6 6.2186 -1.8063 3.6626 9 1 5.6815 -2.3353 4.4359 10 6 7.6021 -1.7093 3.7205 11 7 8.2567 -1.0649 2.7778 12 14 8.5348 -2.4932 5.1364 13 1 7.5744 -3.1536 6.0565 14 1 9.4847 -3.5032 4.6045 15 1 9.2871 -1.4462 5.8736 16 7 2.0184 -0.6906 -1.1960 17 6 2.1472 -0.0183 -2.3571 18 8 1.8540 1.1572 -2.4128 19 6 2.6555 -0.7272 -3.5859 20 1 2.2009 -1.7167 -3.6360 21 6 4.1711 -0.8858 -3.4749 22 16 4.7940 -1.5528 -5.0491 23 8 4.0454 -2.7135 -5.3832 24 8 6.2115 -1.6293 -4.9861 25 6 4.3285 -0.2086 -6.1806 26 6 2.9225 0.2240 -5.8833 27 8 2.3326 0.8114 -6.7654 28 7 2.2662 0.0273 -4.7571 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 3.9994 -1.0727 0.4262 35 1 3.8531 0.4371 1.3575 36 1 3.6401 -0.8757 3.4507 37 1 3.7864 -2.3851 2.5189 38 1 6.0172 -0.7565 1.9299 39 1 9.2234 -0.9968 2.8185 40 1 2.2530 -1.6308 -1.1515 41 1 4.6285 0.0844 -3.2804 42 1 4.4099 -1.5741 -2.6642 43 1 4.3909 -0.5614 -7.2101 44 1 5.0055 0.6345 -6.0432 45 1 1.3946 0.4501 -4.7066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700672056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:52 Heat of formation + Delta-G solvation = -124.111613 kcal Electronic energy + Delta-G solvation = -28805.228232 eV Core-core repulsion = 24564.777331 eV Total energy + Delta-G solvation = -4240.450901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.31020 -39.97423 -37.69736 -37.27804 -36.66345 -36.13356 -35.00108 -32.95467 -31.87971 -31.08711 -30.78646 -29.48222 -26.25985 -25.68457 -23.22847 -22.06854 -21.04848 -20.91512 -20.84822 -19.38656 -18.60408 -18.19969 -17.78045 -17.09364 -16.75176 -16.63756 -16.22799 -16.02647 -15.73823 -15.19604 -14.80976 -14.73405 -14.43006 -14.30974 -13.93254 -13.66722 -13.49172 -13.37297 -13.09379 -12.95484 -12.80207 -12.67052 -12.60497 -12.39711 -12.23848 -11.97619 -11.59610 -11.44123 -11.34020 -10.93603 -10.90610 -10.66023 -10.59004 -10.53637 -10.43935 -10.05109 -9.80868 -9.76045 -9.45294 -8.92823 -6.97843 -5.81569 -3.10737 -0.80347 1.69440 1.86981 2.02968 2.16675 2.72397 2.95387 3.22846 3.32133 3.40047 3.45609 3.48009 3.81163 4.07341 4.11365 4.24597 4.47317 4.52602 4.62372 4.71355 4.84426 4.90903 4.97097 5.26390 5.37279 5.46448 5.51594 5.60232 5.77356 5.89576 5.91737 5.96099 6.05616 6.18234 6.22656 6.29550 6.52159 6.74845 6.78640 7.00330 7.35347 7.65596 7.67129 8.37424 9.48534 10.06081 10.40076 11.41351 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.002762 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.099805 B =10134.979540 C =12263.903351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.092 0.908 4 C -0.124 4.124 5 C -0.127 4.127 6 C 0.152 3.848 7 N -0.735 5.735 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.710 5.710 17 C 0.513 3.487 18 O -0.522 6.522 19 C 0.136 3.864 20 H 0.125 0.875 21 C -0.624 4.624 22 S 2.431 3.569 23 O -0.914 6.914 24 O -0.910 6.910 25 C -0.630 4.630 26 C 0.546 3.454 27 O -0.526 6.526 28 N -0.702 5.702 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.405 0.595 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.174 0.826 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.257 0.163 -15.774 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.163 4.163 5 C -0.165 4.165 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.218 1.218 16 N -0.362 5.362 17 C 0.295 3.705 18 O -0.398 6.398 19 C 0.026 3.974 20 H 0.143 0.857 21 C -0.752 4.752 22 S 2.608 3.392 23 O -0.911 6.911 24 O -0.907 6.907 25 C -0.759 4.759 26 C 0.330 3.670 27 O -0.401 6.401 28 N -0.356 5.356 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.216 0.784 39 H 0.065 0.935 40 H 0.240 0.760 41 H 0.173 0.827 42 H 0.186 0.814 43 H 0.190 0.810 44 H 0.191 0.809 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -15.056 0.318 -16.319 22.206 hybrid contribution 0.390 0.232 0.962 1.064 sum -14.666 0.550 -15.357 21.242 Atomic orbital electron populations 1.22177 0.95013 1.02277 1.02673 1.21159 0.93893 0.97859 0.83431 0.89014 1.21879 0.96958 1.00938 0.96498 1.21754 0.93540 1.01542 0.99618 1.20644 0.86274 0.96459 0.94140 1.42378 1.00132 1.66283 1.29114 1.19267 0.89435 1.27208 1.01325 0.91164 1.24753 0.96463 1.01135 0.98645 1.69660 1.07216 1.46935 1.34345 0.86119 0.79903 0.78529 0.81641 1.20564 1.21795 1.21828 1.46051 1.66249 1.14481 1.09433 1.20196 0.78366 0.87440 0.84494 1.90784 1.49369 1.15197 1.84413 1.20278 0.93527 0.97694 0.85902 0.85737 1.30606 1.02323 1.16812 1.25420 1.08048 0.76055 0.76900 0.78172 1.93658 1.73563 1.42145 1.81727 1.93693 1.26426 1.85609 1.84951 1.30428 1.02937 1.22161 1.20340 1.18234 0.86654 0.80112 0.82025 1.90840 1.65826 1.41402 1.42072 1.44823 1.23626 1.53820 1.13360 0.91252 0.92264 0.92269 0.89974 0.91154 0.92145 0.91877 0.96479 0.96512 0.78369 0.93495 0.75992 0.82665 0.81372 0.81035 0.80854 0.74336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.86 16 2 C 0.14 1.20 2.57 -67.93 -0.17 1.03 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.12 -1.16 4.75 -26.73 -0.13 -1.29 16 5 C -0.13 -1.70 5.22 -26.73 -0.14 -1.84 16 6 C 0.15 2.80 6.26 -4.04 -0.03 2.78 16 7 N -0.73 -17.99 5.60 -59.91 -0.34 -18.32 16 8 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 9 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 12 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 N -0.71 -5.10 4.53 -53.81 -0.24 -5.35 16 17 C 0.51 4.25 6.88 -10.98 -0.08 4.17 16 18 O -0.52 -6.26 15.88 5.56 0.09 -6.17 16 19 C 0.14 0.80 3.18 -70.17 -0.22 0.58 16 20 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 21 C -0.62 -3.19 5.78 37.05 0.21 -2.98 16 22 S 2.43 15.47 5.43 -107.50 -0.58 14.89 16 23 O -0.91 -8.24 17.92 -57.79 -1.04 -9.27 16 24 O -0.91 -9.32 18.11 -57.79 -1.05 -10.37 16 25 C -0.63 -3.47 6.51 35.71 0.23 -3.24 16 26 C 0.55 4.72 7.64 -12.58 -0.10 4.63 16 27 O -0.53 -6.67 17.60 5.55 0.10 -6.57 16 28 N -0.70 -5.17 4.64 -57.14 -0.26 -5.44 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.78 7.75 -51.93 -0.40 0.37 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.38 9.83 7.67 -40.82 -0.31 9.52 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.40 2.00 8.60 -40.82 -0.35 1.64 16 41 H 0.16 0.69 8.13 -51.92 -0.42 0.27 16 42 H 0.17 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.17 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.17 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.42 3.25 7.91 -40.82 -0.32 2.93 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -40.53 388.89 -8.90 -49.42 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.82 Total: 5.63 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.31 Total: -4.30 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.12 Total: -56.17 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.90 Total: -32.39 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 15.47 SS G_CDS: -0.58 Total: 14.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -40.53 -8.90 -49.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700672056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.689 kcal (2) G-P(sol) polarization free energy of solvation -40.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds