Wall clock time and date at job start Wed Apr 1 2020 06:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.53006 * 109.46809 * 119.99419 * 2 1 3 5 5 C 1.53002 * 109.46791 * 185.00139 * 4 2 1 6 6 C 1.53007 * 109.46873 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47021 * 179.97438 * 6 5 4 8 8 C 1.36944 * 119.99851 * 179.97438 * 7 6 5 9 9 H 1.07996 * 119.99749 * 0.02562 * 8 7 6 10 10 C 1.38807 * 119.99979 * 179.97438 * 8 7 6 11 11 N 1.31623 * 120.00266 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00091 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47097 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47340 * 120.00632 * 12 10 8 15 15 H 1.48507 * 109.47426 * 240.00533 * 12 10 8 16 16 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 17 17 C 1.34784 * 119.99864 * 84.99998 * 16 2 1 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 2 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 2 20 20 H 1.09003 * 108.89338 * 41.36156 * 19 17 16 21 21 C 1.52794 * 108.91311 * 282.80995 * 19 17 16 22 22 S 1.81963 * 108.34461 * 186.94531 * 21 19 17 23 23 O 1.42102 * 108.81443 * 308.26347 * 22 21 19 24 24 O 1.42098 * 108.83584 * 176.54864 * 22 21 19 25 25 C 1.81769 * 100.35883 * 62.40144 * 22 21 19 26 26 C 1.50084 * 109.25346 * 315.03112 * 25 22 21 27 27 O 1.21287 * 116.82249 * 200.98057 * 26 25 22 28 28 N 1.31826 * 126.34512 * 20.95330 * 26 25 22 29 29 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 30 30 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 31 31 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47235 * 305.00318 * 4 2 1 33 33 H 1.09002 * 109.46653 * 65.00864 * 4 2 1 34 34 H 1.08997 * 109.47377 * 300.00092 * 5 4 2 35 35 H 1.08994 * 109.47204 * 60.00646 * 5 4 2 36 36 H 1.08997 * 109.46880 * 300.00011 * 6 5 4 37 37 H 1.09004 * 109.47100 * 59.99569 * 6 5 4 38 38 H 0.97001 * 119.99877 * 0.02562 * 7 6 5 39 39 H 0.96993 * 120.00431 * 179.97438 * 11 10 8 40 40 H 0.97000 * 120.00740 * 264.72691 * 16 2 1 41 41 H 1.09007 * 109.68623 * 306.66051 * 21 19 17 42 42 H 1.08995 * 109.68686 * 67.23031 * 21 19 17 43 43 H 1.08999 * 109.50958 * 195.09213 * 25 22 21 44 44 H 1.09001 * 109.54131 * 74.98085 * 25 22 21 45 45 H 0.96998 * 115.26585 * 174.26510 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3349 2.5629 7 7 5.5348 -1.2320 2.6243 8 6 6.2186 -1.8063 3.6626 9 1 5.6815 -2.3353 4.4359 10 6 7.6021 -1.7093 3.7205 11 7 8.2567 -1.0649 2.7778 12 14 8.5348 -2.4932 5.1364 13 1 7.5744 -3.1536 6.0565 14 1 9.4847 -3.5032 4.6045 15 1 9.2871 -1.4462 5.8736 16 7 2.0184 -0.6906 -1.1960 17 6 2.1472 -0.0183 -2.3571 18 8 1.8540 1.1572 -2.4128 19 6 2.6555 -0.7272 -3.5859 20 1 2.2009 -1.7167 -3.6360 21 6 4.1711 -0.8858 -3.4749 22 16 4.7940 -1.5528 -5.0491 23 8 4.0454 -2.7135 -5.3832 24 8 6.2115 -1.6293 -4.9861 25 6 4.3285 -0.2086 -6.1806 26 6 2.9225 0.2240 -5.8833 27 8 2.3326 0.8114 -6.7654 28 7 2.2662 0.0273 -4.7571 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 3.9994 -1.0727 0.4262 35 1 3.8531 0.4371 1.3575 36 1 3.6401 -0.8757 3.4507 37 1 3.7864 -2.3851 2.5189 38 1 6.0172 -0.7565 1.9299 39 1 9.2234 -0.9968 2.8185 40 1 2.2530 -1.6308 -1.1515 41 1 4.6285 0.0844 -3.2804 42 1 4.4099 -1.5741 -2.6642 43 1 4.3909 -0.5614 -7.2101 44 1 5.0055 0.6345 -6.0432 45 1 1.3946 0.4501 -4.7066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700672056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:50 Heat of formation + Delta-G solvation = -159.415979 kcal Electronic energy + Delta-G solvation = -28806.759144 eV Core-core repulsion = 24564.777331 eV Total energy + Delta-G solvation = -4241.981813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.96883 -40.69369 -38.36711 -38.13010 -37.31715 -36.94677 -36.45015 -34.24335 -32.98828 -31.76482 -31.60152 -30.66875 -27.24411 -26.68695 -24.78627 -22.94896 -22.25372 -21.67782 -21.47892 -19.92337 -19.27470 -19.08630 -18.80732 -18.37589 -17.35020 -17.30060 -16.91308 -16.66603 -16.60422 -16.36771 -15.91135 -15.79389 -15.36472 -15.28807 -15.04141 -14.96803 -14.42040 -14.08512 -13.94151 -13.77990 -13.49651 -13.41720 -13.31122 -13.22983 -13.17577 -13.00237 -12.79976 -12.59758 -12.35291 -12.24135 -12.16672 -12.03337 -11.84066 -11.68185 -11.47323 -11.35746 -11.17111 -10.92377 -10.45873 -10.15683 -8.97947 -7.94851 -5.23171 -1.33812 1.09933 1.23679 1.45935 1.48777 1.48858 1.56437 1.58926 2.12117 2.44073 2.56794 2.68994 2.77861 3.31552 3.39637 3.54304 3.66236 3.69680 3.82192 4.00734 4.12255 4.15199 4.31639 4.32324 4.44441 4.51754 4.61544 4.71381 4.85765 4.91596 4.94648 5.02663 5.16068 5.31196 5.35147 5.38030 5.46716 5.53544 5.55139 5.90605 6.28560 6.40732 6.70053 7.07203 7.34658 8.12614 8.33596 9.28801 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.002762 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.099805 B =10134.979540 C =12263.903351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.115 4.115 6 C 0.148 3.852 7 N -0.750 5.750 8 C -0.244 4.244 9 H 0.075 0.925 10 C -0.076 4.076 11 N -0.969 5.969 12 Si 0.971 3.029 13 H -0.266 1.266 14 H -0.293 1.293 15 H -0.295 1.295 16 N -0.702 5.702 17 C 0.514 3.486 18 O -0.562 6.562 19 C 0.137 3.863 20 H 0.159 0.841 21 C -0.621 4.621 22 S 2.457 3.543 23 O -0.941 6.941 24 O -0.950 6.950 25 C -0.622 4.622 26 C 0.545 3.455 27 O -0.573 6.573 28 N -0.698 5.698 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.015 0.985 37 H 0.027 0.973 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.419 0.581 41 H 0.164 0.836 42 H 0.190 0.810 43 H 0.186 0.814 44 H 0.198 0.802 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.278 -1.079 -15.096 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.153 4.153 6 C 0.022 3.978 7 N -0.393 5.393 8 C -0.376 4.376 9 H 0.093 0.907 10 C -0.268 4.268 11 N -0.620 5.620 12 Si 0.800 3.200 13 H -0.190 1.190 14 H -0.220 1.220 15 H -0.222 1.222 16 N -0.354 5.354 17 C 0.298 3.702 18 O -0.441 6.441 19 C 0.027 3.973 20 H 0.176 0.824 21 C -0.750 4.750 22 S 2.638 3.362 23 O -0.938 6.938 24 O -0.947 6.947 25 C -0.751 4.751 26 C 0.330 3.670 27 O -0.452 6.452 28 N -0.351 5.351 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.257 0.743 41 H 0.182 0.818 42 H 0.207 0.793 43 H 0.204 0.796 44 H 0.215 0.785 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.107 -0.997 -15.604 22.448 hybrid contribution 0.604 0.651 0.812 1.204 sum -15.502 -0.346 -14.792 21.430 Atomic orbital electron populations 1.22112 0.93757 1.03232 1.02406 1.21005 0.94754 0.96696 0.83512 0.91298 1.21773 0.93644 1.02455 0.97106 1.21633 0.96376 0.99809 0.97500 1.20879 0.83042 0.97524 0.96386 1.42650 1.02606 1.65863 1.28159 1.19671 0.89920 1.26197 1.01798 0.90667 1.25548 0.97558 1.02483 1.01256 1.69805 1.07029 1.48851 1.36296 0.85113 0.78551 0.77387 0.78956 1.18983 1.21999 1.22249 1.45984 1.65567 1.15106 1.08760 1.20498 0.77651 0.86923 0.85142 1.90778 1.51206 1.17043 1.85041 1.20489 0.94105 0.98498 0.84164 0.82396 1.30623 1.01646 1.17816 1.24950 1.07105 0.74610 0.76386 0.78134 1.93617 1.73710 1.44080 1.82390 1.93648 1.28920 1.86390 1.85733 1.30439 1.01274 1.22486 1.20939 1.18649 0.87378 0.79284 0.81650 1.90825 1.67004 1.43733 1.43633 1.44871 1.23417 1.53336 1.13463 0.90689 0.93441 0.90642 0.89483 0.89024 0.91358 0.93499 0.96691 0.95532 0.79523 0.94038 0.74323 0.81773 0.79269 0.79600 0.78455 0.74674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.48 71.98 0.68 -1.30 16 2 C 0.14 2.19 2.57 44.99 0.12 2.31 16 3 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 4 C -0.11 -1.78 4.75 30.60 0.15 -1.63 16 5 C -0.12 -2.89 5.22 30.60 0.16 -2.73 16 6 C 0.15 5.19 6.26 86.38 0.54 5.74 16 7 N -0.75 -36.29 5.60 -343.45 -1.92 -38.21 16 8 C -0.24 -13.23 9.99 84.03 0.84 -12.39 16 9 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 10 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 11 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 12 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 15 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 16 N -0.70 -8.36 4.53 -442.53 -2.01 -10.37 16 17 C 0.51 7.65 6.88 87.65 0.60 8.26 16 18 O -0.56 -13.15 15.88 -3.04 -0.05 -13.20 16 19 C 0.14 1.33 3.18 44.52 0.14 1.47 16 20 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 21 C -0.62 -5.05 5.78 71.91 0.42 -4.64 16 22 S 2.46 28.07 5.43 -56.49 -0.31 27.76 16 23 O -0.94 -15.72 17.92 -127.41 -2.28 -18.01 16 24 O -0.95 -18.77 18.11 -127.41 -2.31 -21.07 16 25 C -0.62 -6.04 6.51 71.04 0.46 -5.58 16 26 C 0.54 9.03 7.64 87.92 0.67 9.70 16 27 O -0.57 -14.59 17.60 -3.05 -0.05 -14.64 16 28 N -0.70 -9.57 4.64 -454.70 -2.11 -11.68 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.60 7.75 -2.39 -0.02 1.58 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.37 19.21 7.67 -92.71 -0.71 18.50 16 39 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.42 2.67 8.60 -92.71 -0.80 1.87 16 41 H 0.16 1.14 8.13 -2.38 -0.02 1.13 16 42 H 0.19 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.19 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.20 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.42 6.30 7.91 -92.71 -0.73 5.56 16 Total: -1.00 -88.17 388.89 -4.69 -92.86 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -1.20 Total: 21.88 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.24 Total: -4.63 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -5.75 Total: -118.13 kcal Atomic # 8 Polarization: -62.24 SS G_CDS: -4.69 Total: -66.93 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 28.07 SS G_CDS: -0.31 Total: 27.76 kcal Total: -88.17 -4.69 -92.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700672056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.557 kcal (2) G-P(sol) polarization free energy of solvation -88.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds