Wall clock time and date at job start Wed Apr 1 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.47485 * 179.97438 * 6 5 4 8 8 C 1.36939 * 119.99912 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99934 * 359.97438 * 8 7 6 10 10 C 1.38807 * 119.99541 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00486 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99701 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47377 * 89.99361 * 12 10 8 14 14 H 1.48501 * 109.46820 * 209.99407 * 12 10 8 15 15 H 1.48499 * 109.47173 * 329.99000 * 12 10 8 16 16 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 17 17 C 1.34777 * 119.99688 * 274.99602 * 16 2 1 18 18 O 1.21279 * 119.99974 * 0.02562 * 17 16 2 19 19 C 1.50698 * 119.99799 * 180.02562 * 17 16 2 20 20 H 1.09001 * 108.88710 * 41.36004 * 19 17 16 21 21 C 1.52793 * 108.91134 * 282.80769 * 19 17 16 22 22 S 1.81973 * 108.34310 * 186.93977 * 21 19 17 23 23 O 1.42094 * 108.81934 * 308.27386 * 22 21 19 24 24 O 1.42100 * 108.83464 * 176.55013 * 22 21 19 25 25 C 1.81777 * 100.35076 * 62.40911 * 22 21 19 26 26 C 1.50082 * 109.25632 * 315.02497 * 25 22 21 27 27 O 1.21281 * 116.83086 * 200.98457 * 26 25 22 28 28 N 1.31828 * 126.34322 * 20.95744 * 26 25 22 29 29 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 36 36 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 37 37 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 38 38 H 0.96992 * 119.99570 * 0.02562 * 7 6 5 39 39 H 0.96993 * 120.00311 * 180.02562 * 11 10 8 40 40 H 0.96993 * 119.99992 * 94.99462 * 16 2 1 41 41 H 1.09002 * 109.69199 * 306.66346 * 21 19 17 42 42 H 1.09009 * 109.68523 * 67.23697 * 21 19 17 43 43 H 1.08998 * 109.50261 * 195.09373 * 25 22 21 44 44 H 1.08994 * 109.54479 * 74.98308 * 25 22 21 45 45 H 0.96992 * 115.27291 * 174.26018 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 7 5.5347 -1.2301 -2.6254 8 6 6.2184 -1.8034 -3.6643 9 1 5.6812 -2.3324 -4.4376 10 6 7.6017 -1.7054 -3.7227 11 7 8.2564 -1.0611 -2.7800 12 14 8.5343 -2.4868 -5.1403 13 1 8.6662 -1.5054 -6.2468 14 1 9.8848 -2.8963 -4.6782 15 1 7.7932 -3.6799 -5.6224 16 7 2.0184 -0.6907 1.1962 17 6 2.1471 -0.0184 2.3571 18 8 1.8583 1.1582 2.4117 19 6 2.6500 -0.7288 3.5874 20 1 3.4714 -1.3868 3.3039 21 6 1.5180 -1.5748 4.1682 22 16 2.0735 -2.2596 5.7600 23 8 3.3278 -2.9000 5.5708 24 8 1.0008 -2.9827 6.3478 25 6 2.3336 -0.7268 6.7020 26 6 3.0689 0.2620 5.8452 27 8 3.6551 1.1548 6.4198 28 7 3.1401 0.2542 4.5289 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7515 -1.7715 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4369 -1.3574 35 1 3.9994 -1.0728 -0.4261 36 1 3.7863 -2.3843 -2.5201 37 1 3.6401 -0.8740 -3.4508 38 1 6.0171 -0.7553 -1.9307 39 1 9.2230 -0.9923 -2.8211 40 1 2.2490 -1.6319 1.1525 41 1 0.6367 -0.9524 4.3235 42 1 1.2781 -2.3876 3.4825 43 1 2.9212 -0.9432 7.5941 44 1 1.3696 -0.3099 6.9933 45 1 3.5867 1.0193 4.1338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700672066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:40:00 Heat of formation + Delta-G solvation = -123.501489 kcal Electronic energy + Delta-G solvation = -28574.836716 eV Core-core repulsion = 24334.412272 eV Total energy + Delta-G solvation = -4240.424444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.31458 -39.97612 -37.81005 -37.28594 -36.78816 -36.14536 -34.98584 -32.95639 -31.87306 -31.14052 -30.83415 -29.49061 -26.26738 -25.70364 -23.22498 -22.07223 -21.05644 -20.89502 -20.87086 -19.46602 -18.63748 -18.24118 -17.82752 -17.06620 -16.90397 -16.65897 -16.21629 -16.10615 -15.79951 -15.17136 -14.81587 -14.75040 -14.52307 -14.25341 -13.93710 -13.72333 -13.55792 -13.44393 -13.08332 -13.00670 -12.84804 -12.75765 -12.70945 -12.40248 -12.23334 -12.06439 -11.69163 -11.42805 -11.33342 -10.90522 -10.88829 -10.67556 -10.57871 -10.52462 -10.43871 -10.06112 -9.80063 -9.74134 -9.45112 -8.90378 -6.95678 -5.79277 -3.08478 -0.92011 1.61960 1.86288 1.96900 2.15926 2.70903 2.83651 3.13327 3.27007 3.41628 3.46509 3.48526 3.70888 3.97759 4.09275 4.17092 4.45441 4.48303 4.61859 4.64793 4.74512 4.84769 4.96832 5.26254 5.36857 5.46261 5.53241 5.60830 5.78290 5.88768 5.92670 5.98504 6.07578 6.18526 6.25274 6.32325 6.53940 6.77596 6.81231 7.00075 7.36627 7.66669 7.66752 8.39665 9.50599 10.08626 10.42632 11.43598 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.002298 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.908160 B =12182.708621 C =13075.103367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.093 0.907 4 C -0.124 4.124 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.710 5.710 17 C 0.513 3.487 18 O -0.522 6.522 19 C 0.134 3.866 20 H 0.128 0.872 21 C -0.621 4.621 22 S 2.429 3.571 23 O -0.908 6.908 24 O -0.917 6.917 25 C -0.627 4.627 26 C 0.544 3.456 27 O -0.523 6.523 28 N -0.701 5.701 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.383 0.617 39 H 0.256 0.744 40 H 0.405 0.595 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.172 0.828 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.345 -1.143 17.171 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.111 0.889 4 C -0.162 4.162 5 C -0.165 4.165 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.208 1.208 16 N -0.362 5.362 17 C 0.296 3.704 18 O -0.397 6.397 19 C 0.024 3.976 20 H 0.146 0.854 21 C -0.749 4.749 22 S 2.606 3.394 23 O -0.905 6.905 24 O -0.914 6.914 25 C -0.756 4.756 26 C 0.327 3.673 27 O -0.398 6.398 28 N -0.356 5.356 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.240 0.760 41 H 0.170 0.830 42 H 0.182 0.818 43 H 0.190 0.810 44 H 0.190 0.810 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -20.215 -1.011 17.742 26.915 hybrid contribution 0.720 0.310 -1.051 1.311 sum -19.495 -0.701 16.691 25.674 Atomic orbital electron populations 1.22180 0.95095 1.02205 1.02659 1.21165 0.93803 0.97938 0.83454 0.88943 1.21872 0.97036 1.00867 0.96440 1.21752 0.93469 1.01584 0.99686 1.20638 0.86286 0.96433 0.94120 1.42374 1.00152 1.66351 1.29012 1.19225 0.89444 1.27320 1.01292 0.91221 1.24756 0.96465 1.01165 0.98623 1.69653 1.07274 1.46932 1.34315 0.86185 0.79402 0.78805 0.81763 1.21700 1.21718 1.20759 1.46048 1.66403 1.14417 1.09325 1.20170 0.78563 0.87435 0.84274 1.90783 1.49132 1.15314 1.84503 1.20301 0.96873 0.90996 0.89466 0.85408 1.30564 1.08258 1.12050 1.24031 1.08088 0.76150 0.77104 0.78008 1.93691 1.41809 1.70479 1.84541 1.93664 1.55752 1.67235 1.74730 1.30396 1.12063 1.19138 1.14018 1.18205 0.81155 0.86435 0.81475 1.90855 1.43875 1.36138 1.68931 1.44832 1.58968 1.26922 1.04911 0.91231 0.92315 0.92335 0.91202 0.89995 0.91868 0.92017 0.96549 0.96517 0.78335 0.93456 0.75991 0.83014 0.81777 0.80966 0.81019 0.74000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 2 C 0.14 1.20 2.57 -67.93 -0.17 1.03 16 3 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 4 C -0.12 -1.17 4.75 -26.73 -0.13 -1.30 16 5 C -0.13 -1.76 5.21 -26.74 -0.14 -1.89 16 6 C 0.15 2.86 6.26 -4.04 -0.03 2.84 16 7 N -0.73 -18.29 5.60 -59.91 -0.34 -18.63 16 8 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 9 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 11 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 12 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 N -0.71 -5.10 4.53 -53.80 -0.24 -5.34 16 17 C 0.51 4.25 6.88 -10.99 -0.08 4.17 16 18 O -0.52 -6.24 15.88 5.56 0.09 -6.16 16 19 C 0.13 0.79 3.18 -70.17 -0.22 0.56 16 20 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 21 C -0.62 -1.89 5.78 37.05 0.21 -1.68 16 22 S 2.43 11.77 5.43 -107.50 -0.58 11.19 16 23 O -0.91 -7.77 17.92 -57.79 -1.04 -8.80 16 24 O -0.92 -6.98 18.11 -57.79 -1.05 -8.02 16 25 C -0.63 -2.90 6.51 35.71 0.23 -2.67 16 26 C 0.54 4.70 7.64 -12.58 -0.10 4.61 16 27 O -0.52 -6.83 17.60 5.56 0.10 -6.74 16 28 N -0.70 -5.50 4.64 -57.14 -0.26 -5.76 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.38 10.05 7.67 -40.82 -0.31 9.74 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.40 1.99 8.60 -40.82 -0.35 1.64 16 41 H 0.15 0.23 8.13 -51.93 -0.42 -0.19 16 42 H 0.16 0.06 8.14 -51.92 -0.42 -0.36 16 43 H 0.17 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.17 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.42 3.78 7.91 -40.82 -0.32 3.46 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -41.01 388.89 -8.90 -49.91 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.82 Total: 5.23 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.31 Total: -2.53 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.12 Total: -57.16 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.90 Total: -29.72 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 11.77 SS G_CDS: -0.58 Total: 11.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -41.01 -8.90 -49.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700672066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.594 kcal (2) G-P(sol) polarization free energy of solvation -41.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds