Wall clock time and date at job start Wed Apr 1 2020 06:39:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08990 * 109.47355 * 2 1
4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3
5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1
6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2
7 7 N 1.46507 * 109.47485 * 179.97438 * 6 5 4
8 8 C 1.36939 * 119.99912 * 180.02562 * 7 6 5
9 9 H 1.08001 * 119.99934 * 359.97438 * 8 7 6
10 10 C 1.38807 * 119.99541 * 180.02562 * 8 7 6
11 11 N 1.31619 * 120.00486 * 359.97438 * 10 8 7
12 12 Si 1.86803 * 119.99701 * 180.02562 * 10 8 7
13 13 H 1.48494 * 109.47377 * 89.99361 * 12 10 8
14 14 H 1.48501 * 109.46820 * 209.99407 * 12 10 8
15 15 H 1.48499 * 109.47173 * 329.99000 * 12 10 8
16 16 N 1.46506 * 109.47102 * 120.00504 * 2 1 3
17 17 C 1.34777 * 119.99688 * 274.99602 * 16 2 1
18 18 O 1.21279 * 119.99974 * 0.02562 * 17 16 2
19 19 C 1.50698 * 119.99799 * 180.02562 * 17 16 2
20 20 H 1.09001 * 108.88710 * 41.36004 * 19 17 16
21 21 C 1.52793 * 108.91134 * 282.80769 * 19 17 16
22 22 S 1.81973 * 108.34310 * 186.93977 * 21 19 17
23 23 O 1.42094 * 108.81934 * 308.27386 * 22 21 19
24 24 O 1.42100 * 108.83464 * 176.55013 * 22 21 19
25 25 C 1.81777 * 100.35076 * 62.40911 * 22 21 19
26 26 C 1.50082 * 109.25632 * 315.02497 * 25 22 21
27 27 O 1.21281 * 116.83086 * 200.98457 * 26 25 22
28 28 N 1.31828 * 126.34322 * 20.95744 * 26 25 22
29 29 H 1.08994 * 109.47359 * 59.99600 * 1 2 3
30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3
31 31 H 1.09004 * 109.46964 * 299.99825 * 1 2 3
32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1
33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1
34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2
35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2
36 36 H 1.09002 * 109.47103 * 300.00247 * 6 5 4
37 37 H 1.09001 * 109.47066 * 60.00169 * 6 5 4
38 38 H 0.96992 * 119.99570 * 0.02562 * 7 6 5
39 39 H 0.96993 * 120.00311 * 180.02562 * 11 10 8
40 40 H 0.96993 * 119.99992 * 94.99462 * 16 2 1
41 41 H 1.09002 * 109.69199 * 306.66346 * 21 19 17
42 42 H 1.09009 * 109.68523 * 67.23697 * 21 19 17
43 43 H 1.08998 * 109.50261 * 195.09373 * 25 22 21
44 44 H 1.08994 * 109.54479 * 74.98308 * 25 22 21
45 45 H 0.96992 * 115.27291 * 174.26018 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 3.5647 -0.6133 -1.3138
6 6 4.0747 -1.3340 -2.5633
7 7 5.5347 -1.2301 -2.6254
8 6 6.2184 -1.8034 -3.6643
9 1 5.6812 -2.3324 -4.4376
10 6 7.6017 -1.7054 -3.7227
11 7 8.2564 -1.0611 -2.7800
12 14 8.5343 -2.4868 -5.1403
13 1 8.6662 -1.5054 -6.2468
14 1 9.8848 -2.8963 -4.6782
15 1 7.7932 -3.6799 -5.6224
16 7 2.0184 -0.6907 1.1962
17 6 2.1471 -0.0184 2.3571
18 8 1.8583 1.1582 2.4117
19 6 2.6500 -0.7288 3.5874
20 1 3.4714 -1.3868 3.3039
21 6 1.5180 -1.5748 4.1682
22 16 2.0735 -2.2596 5.7600
23 8 3.3278 -2.9000 5.5708
24 8 1.0008 -2.9827 6.3478
25 6 2.3336 -0.7268 6.7020
26 6 3.0689 0.2620 5.8452
27 8 3.6551 1.1548 6.4198
28 7 3.1401 0.2542 4.5289
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.7515 -1.7715 -1.2057
33 1 1.6053 -0.2617 -2.1370
34 1 3.8531 0.4369 -1.3574
35 1 3.9994 -1.0728 -0.4261
36 1 3.7863 -2.3843 -2.5201
37 1 3.6401 -0.8740 -3.4508
38 1 6.0171 -0.7553 -1.9307
39 1 9.2230 -0.9923 -2.8211
40 1 2.2490 -1.6319 1.1525
41 1 0.6367 -0.9524 4.3235
42 1 1.2781 -2.3876 3.4825
43 1 2.9212 -0.9432 7.5941
44 1 1.3696 -0.3099 6.9933
45 1 3.5867 1.0193 4.1338
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700672066.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:39:57
Heat of formation + Delta-G solvation = -159.611301 kcal
Electronic energy + Delta-G solvation = -28576.402555 eV
Core-core repulsion = 24334.412272 eV
Total energy + Delta-G solvation = -4241.990283 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 2.84 seconds
Orbital eigenvalues (eV)
-41.96494 -40.69445 -38.35942 -38.13272 -37.31136 -36.94794 -36.45653 -34.25617
-32.98390 -31.75851 -31.58178 -30.70041 -27.23183 -26.67658 -24.80068 -22.95716
-22.26255 -21.66352 -21.48278 -19.90156 -19.27576 -19.09626 -18.77968 -18.40677
-17.44244 -17.24021 -16.86796 -16.66081 -16.60658 -16.38444 -15.91969 -15.73359
-15.36781 -15.31680 -15.15566 -14.85547 -14.43703 -14.09563 -13.95569 -13.74803
-13.49643 -13.41723 -13.30566 -13.23517 -13.14541 -12.99201 -12.77471 -12.59276
-12.36648 -12.25179 -12.17731 -12.04779 -11.84303 -11.68719 -11.47681 -11.35980
-11.16372 -10.92346 -10.47168 -10.15177 -8.99380 -7.95522 -5.24354 -1.32455
1.11265 1.23576 1.45335 1.47654 1.49262 1.57205 1.57766 2.12197
2.44406 2.56213 2.69037 2.78595 3.33230 3.38654 3.53557 3.67740
3.70751 3.83362 4.00338 4.13531 4.15162 4.31423 4.32704 4.44237
4.50655 4.61113 4.70928 4.86056 4.90510 4.95003 5.02990 5.15668
5.27295 5.35503 5.37703 5.45789 5.52594 5.54707 5.92748 6.27444
6.40833 6.70486 7.07273 7.33219 8.11482 8.32215 9.28139
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.012035 B = 0.002298 C = 0.002141
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2325.908160 B =12182.708621 C =13075.103367
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.144 3.856
3 H 0.067 0.933
4 C -0.111 4.111
5 C -0.115 4.115
6 C 0.148 3.852
7 N -0.751 5.751
8 C -0.245 4.245
9 H 0.077 0.923
10 C -0.078 4.078
11 N -0.971 5.971
12 Si 0.973 3.027
13 H -0.288 1.288
14 H -0.296 1.296
15 H -0.267 1.267
16 N -0.701 5.701
17 C 0.515 3.485
18 O -0.562 6.562
19 C 0.131 3.869
20 H 0.146 0.854
21 C -0.610 4.610
22 S 2.456 3.544
23 O -0.948 6.948
24 O -0.942 6.942
25 C -0.622 4.622
26 C 0.541 3.459
27 O -0.577 6.577
28 N -0.703 5.703
29 H 0.073 0.927
30 H 0.078 0.922
31 H 0.048 0.952
32 H 0.093 0.907
33 H 0.087 0.913
34 H 0.044 0.956
35 H 0.064 0.936
36 H 0.027 0.973
37 H 0.017 0.983
38 H 0.372 0.628
39 H 0.251 0.749
40 H 0.419 0.581
41 H 0.174 0.826
42 H 0.200 0.800
43 H 0.182 0.818
44 H 0.204 0.796
45 H 0.412 0.588
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.577 -2.871 16.548 28.139
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.040 3.960
3 H 0.085 0.915
4 C -0.149 4.149
5 C -0.153 4.153
6 C 0.022 3.978
7 N -0.394 5.394
8 C -0.377 4.377
9 H 0.095 0.905
10 C -0.270 4.270
11 N -0.622 5.622
12 Si 0.802 3.198
13 H -0.215 1.215
14 H -0.223 1.223
15 H -0.191 1.191
16 N -0.354 5.354
17 C 0.299 3.701
18 O -0.441 6.441
19 C 0.021 3.979
20 H 0.164 0.836
21 C -0.739 4.739
22 S 2.637 3.363
23 O -0.945 6.945
24 O -0.939 6.939
25 C -0.751 4.751
26 C 0.327 3.673
27 O -0.456 6.456
28 N -0.355 5.355
29 H 0.092 0.908
30 H 0.097 0.903
31 H 0.067 0.933
32 H 0.111 0.889
33 H 0.106 0.894
34 H 0.063 0.937
35 H 0.082 0.918
36 H 0.045 0.955
37 H 0.035 0.965
38 H 0.203 0.797
39 H 0.060 0.940
40 H 0.257 0.743
41 H 0.192 0.808
42 H 0.217 0.783
43 H 0.200 0.800
44 H 0.221 0.779
45 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges -22.504 -2.822 17.100 28.404
hybrid contribution 1.340 0.888 -0.929 1.856
sum -21.165 -1.934 16.171 26.705
Atomic orbital electron populations
1.22107 0.93456 1.03391 1.02442 1.21015 0.94949 0.96610 0.83472
0.91501 1.21770 0.93389 1.02543 0.97192 1.21626 0.96615 0.99689
0.97398 1.20882 0.83004 0.97536 0.96364 1.42665 1.02685 1.65956
1.28068 1.19662 0.89961 1.26342 1.01767 0.90521 1.25593 0.97590
1.02506 1.01331 1.69812 1.07067 1.48919 1.36390 0.85142 0.77701
0.78294 0.78654 1.21523 1.22269 1.19147 1.45980 1.65754 1.15039
1.08637 1.20472 0.77787 0.86935 0.84955 1.90776 1.50964 1.17151
1.85177 1.20499 0.98490 0.90614 0.88274 0.83642 1.30573 1.07813
1.12815 1.22735 1.07133 0.74652 0.76466 0.78063 1.93642 1.43657
1.71965 1.85274 1.93635 1.56181 1.68283 1.75766 1.30451 1.13215
1.17763 1.13649 1.18800 0.80509 0.86356 0.81605 1.90832 1.46314
1.38494 1.69980 1.44952 1.58378 1.26956 1.05164 0.90782 0.90349
0.93302 0.88875 0.89400 0.93676 0.91760 0.95480 0.96541 0.79660
0.94041 0.74328 0.80776 0.78281 0.80030 0.77915 0.75064
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 52.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.82 9.48 71.98 0.68 -1.14 16
2 C 0.14 2.18 2.57 44.99 0.12 2.29 16
3 H 0.07 1.40 7.58 -2.39 -0.02 1.38 16
4 C -0.11 -1.80 4.75 30.59 0.15 -1.66 16
5 C -0.12 -3.04 5.21 30.59 0.16 -2.88 16
6 C 0.15 5.35 6.26 86.38 0.54 5.89 16
7 N -0.75 -37.32 5.60 -343.45 -1.92 -39.25 16
8 C -0.25 -13.54 9.99 84.03 0.84 -12.70 16
9 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16
10 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16
11 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16
12 Si 0.97 45.68 29.55 68.60 2.03 47.71 16
13 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16
14 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16
15 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16
16 N -0.70 -8.38 4.53 -442.53 -2.00 -10.39 16
17 C 0.52 7.73 6.88 87.66 0.60 8.33 16
18 O -0.56 -13.25 15.88 -3.03 -0.05 -13.30 16
19 C 0.13 1.30 3.18 44.52 0.14 1.44 16
20 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16
21 C -0.61 -1.79 5.78 71.91 0.42 -1.38 16
22 S 2.46 19.19 5.43 -56.49 -0.31 18.88 16
23 O -0.95 -15.20 17.92 -127.41 -2.28 -17.49 16
24 O -0.94 -12.42 18.11 -127.41 -2.31 -14.73 16
25 C -0.62 -4.90 6.51 71.04 0.46 -4.44 16
26 C 0.54 9.27 7.64 87.92 0.67 9.94 16
27 O -0.58 -15.66 17.60 -3.03 -0.05 -15.71 16
28 N -0.70 -10.78 4.64 -454.69 -2.11 -12.89 16
29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16
31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16
32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
35 H 0.06 1.65 7.75 -2.39 -0.02 1.63 16
36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16
37 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16
38 H 0.37 19.82 7.67 -92.71 -0.71 19.10 16
39 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16
40 H 0.42 2.67 8.60 -92.71 -0.80 1.87 16
41 H 0.17 -0.13 8.13 -2.39 -0.02 -0.15 16
42 H 0.20 -0.77 8.14 -2.38 -0.02 -0.79 16
43 H 0.18 1.13 8.14 -2.39 -0.02 1.11 16
44 H 0.20 0.26 8.14 -2.39 -0.02 0.24 16
45 H 0.41 7.75 7.91 -92.71 -0.73 7.02 16
Total: -1.00 -90.95 388.89 -4.68 -95.63
By element:
Atomic # 1 Polarization: 22.18 SS G_CDS: -1.20 Total: 20.98 kcal
Atomic # 6 Polarization: -5.53 SS G_CDS: 5.24 Total: -0.29 kcal
Atomic # 7 Polarization: -115.93 SS G_CDS: -5.75 Total: -121.69 kcal
Atomic # 8 Polarization: -56.53 SS G_CDS: -4.69 Total: -61.23 kcal
Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal
Atomic # 16 Polarization: 19.19 SS G_CDS: -0.31 Total: 18.88 kcal
Total: -90.95 -4.68 -95.63 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700672066.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.981 kcal
(2) G-P(sol) polarization free energy of solvation -90.945 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.927 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.630 kcal
(6) G-S(sol) free energy of system = (1) + (5) -159.611 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.84 seconds