Wall clock time and date at job start Wed Apr 1 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.47485 * 179.97438 * 6 5 4 8 8 C 1.36939 * 119.99912 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99934 * 359.97438 * 8 7 6 10 10 C 1.38807 * 119.99541 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00486 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99701 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47377 * 89.99361 * 12 10 8 14 14 H 1.48501 * 109.46820 * 209.99407 * 12 10 8 15 15 H 1.48499 * 109.47173 * 329.99000 * 12 10 8 16 16 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 17 17 C 1.34777 * 119.99688 * 274.99602 * 16 2 1 18 18 O 1.21279 * 119.99974 * 0.02562 * 17 16 2 19 19 C 1.50698 * 119.99799 * 180.02562 * 17 16 2 20 20 H 1.09001 * 108.88710 * 41.36004 * 19 17 16 21 21 C 1.52793 * 108.91134 * 282.80769 * 19 17 16 22 22 S 1.81973 * 108.34310 * 186.93977 * 21 19 17 23 23 O 1.42094 * 108.81934 * 308.27386 * 22 21 19 24 24 O 1.42100 * 108.83464 * 176.55013 * 22 21 19 25 25 C 1.81777 * 100.35076 * 62.40911 * 22 21 19 26 26 C 1.50082 * 109.25632 * 315.02497 * 25 22 21 27 27 O 1.21281 * 116.83086 * 200.98457 * 26 25 22 28 28 N 1.31828 * 126.34322 * 20.95744 * 26 25 22 29 29 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 36 36 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 37 37 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 38 38 H 0.96992 * 119.99570 * 0.02562 * 7 6 5 39 39 H 0.96993 * 120.00311 * 180.02562 * 11 10 8 40 40 H 0.96993 * 119.99992 * 94.99462 * 16 2 1 41 41 H 1.09002 * 109.69199 * 306.66346 * 21 19 17 42 42 H 1.09009 * 109.68523 * 67.23697 * 21 19 17 43 43 H 1.08998 * 109.50261 * 195.09373 * 25 22 21 44 44 H 1.08994 * 109.54479 * 74.98308 * 25 22 21 45 45 H 0.96992 * 115.27291 * 174.26018 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 7 5.5347 -1.2301 -2.6254 8 6 6.2184 -1.8034 -3.6643 9 1 5.6812 -2.3324 -4.4376 10 6 7.6017 -1.7054 -3.7227 11 7 8.2564 -1.0611 -2.7800 12 14 8.5343 -2.4868 -5.1403 13 1 8.6662 -1.5054 -6.2468 14 1 9.8848 -2.8963 -4.6782 15 1 7.7932 -3.6799 -5.6224 16 7 2.0184 -0.6907 1.1962 17 6 2.1471 -0.0184 2.3571 18 8 1.8583 1.1582 2.4117 19 6 2.6500 -0.7288 3.5874 20 1 3.4714 -1.3868 3.3039 21 6 1.5180 -1.5748 4.1682 22 16 2.0735 -2.2596 5.7600 23 8 3.3278 -2.9000 5.5708 24 8 1.0008 -2.9827 6.3478 25 6 2.3336 -0.7268 6.7020 26 6 3.0689 0.2620 5.8452 27 8 3.6551 1.1548 6.4198 28 7 3.1401 0.2542 4.5289 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7515 -1.7715 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4369 -1.3574 35 1 3.9994 -1.0728 -0.4261 36 1 3.7863 -2.3843 -2.5201 37 1 3.6401 -0.8740 -3.4508 38 1 6.0171 -0.7553 -1.9307 39 1 9.2230 -0.9923 -2.8211 40 1 2.2490 -1.6319 1.1525 41 1 0.6367 -0.9524 4.3235 42 1 1.2781 -2.3876 3.4825 43 1 2.9212 -0.9432 7.5941 44 1 1.3696 -0.3099 6.9933 45 1 3.5867 1.0193 4.1338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700672066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:57 Heat of formation + Delta-G solvation = -159.611301 kcal Electronic energy + Delta-G solvation = -28576.402555 eV Core-core repulsion = 24334.412272 eV Total energy + Delta-G solvation = -4241.990283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.96494 -40.69445 -38.35942 -38.13272 -37.31136 -36.94794 -36.45653 -34.25617 -32.98390 -31.75851 -31.58178 -30.70041 -27.23183 -26.67658 -24.80068 -22.95716 -22.26255 -21.66352 -21.48278 -19.90156 -19.27576 -19.09626 -18.77968 -18.40677 -17.44244 -17.24021 -16.86796 -16.66081 -16.60658 -16.38444 -15.91969 -15.73359 -15.36781 -15.31680 -15.15566 -14.85547 -14.43703 -14.09563 -13.95569 -13.74803 -13.49643 -13.41723 -13.30566 -13.23517 -13.14541 -12.99201 -12.77471 -12.59276 -12.36648 -12.25179 -12.17731 -12.04779 -11.84303 -11.68719 -11.47681 -11.35980 -11.16372 -10.92346 -10.47168 -10.15177 -8.99380 -7.95522 -5.24354 -1.32455 1.11265 1.23576 1.45335 1.47654 1.49262 1.57205 1.57766 2.12197 2.44406 2.56213 2.69037 2.78595 3.33230 3.38654 3.53557 3.67740 3.70751 3.83362 4.00338 4.13531 4.15162 4.31423 4.32704 4.44237 4.50655 4.61113 4.70928 4.86056 4.90510 4.95003 5.02990 5.15668 5.27295 5.35503 5.37703 5.45789 5.52594 5.54707 5.92748 6.27444 6.40833 6.70486 7.07273 7.33219 8.11482 8.32215 9.28139 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.002298 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.908160 B =12182.708621 C =13075.103367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.148 3.852 7 N -0.751 5.751 8 C -0.245 4.245 9 H 0.077 0.923 10 C -0.078 4.078 11 N -0.971 5.971 12 Si 0.973 3.027 13 H -0.288 1.288 14 H -0.296 1.296 15 H -0.267 1.267 16 N -0.701 5.701 17 C 0.515 3.485 18 O -0.562 6.562 19 C 0.131 3.869 20 H 0.146 0.854 21 C -0.610 4.610 22 S 2.456 3.544 23 O -0.948 6.948 24 O -0.942 6.942 25 C -0.622 4.622 26 C 0.541 3.459 27 O -0.577 6.577 28 N -0.703 5.703 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.017 0.983 38 H 0.372 0.628 39 H 0.251 0.749 40 H 0.419 0.581 41 H 0.174 0.826 42 H 0.200 0.800 43 H 0.182 0.818 44 H 0.204 0.796 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.577 -2.871 16.548 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.153 4.153 6 C 0.022 3.978 7 N -0.394 5.394 8 C -0.377 4.377 9 H 0.095 0.905 10 C -0.270 4.270 11 N -0.622 5.622 12 Si 0.802 3.198 13 H -0.215 1.215 14 H -0.223 1.223 15 H -0.191 1.191 16 N -0.354 5.354 17 C 0.299 3.701 18 O -0.441 6.441 19 C 0.021 3.979 20 H 0.164 0.836 21 C -0.739 4.739 22 S 2.637 3.363 23 O -0.945 6.945 24 O -0.939 6.939 25 C -0.751 4.751 26 C 0.327 3.673 27 O -0.456 6.456 28 N -0.355 5.355 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.203 0.797 39 H 0.060 0.940 40 H 0.257 0.743 41 H 0.192 0.808 42 H 0.217 0.783 43 H 0.200 0.800 44 H 0.221 0.779 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -22.504 -2.822 17.100 28.404 hybrid contribution 1.340 0.888 -0.929 1.856 sum -21.165 -1.934 16.171 26.705 Atomic orbital electron populations 1.22107 0.93456 1.03391 1.02442 1.21015 0.94949 0.96610 0.83472 0.91501 1.21770 0.93389 1.02543 0.97192 1.21626 0.96615 0.99689 0.97398 1.20882 0.83004 0.97536 0.96364 1.42665 1.02685 1.65956 1.28068 1.19662 0.89961 1.26342 1.01767 0.90521 1.25593 0.97590 1.02506 1.01331 1.69812 1.07067 1.48919 1.36390 0.85142 0.77701 0.78294 0.78654 1.21523 1.22269 1.19147 1.45980 1.65754 1.15039 1.08637 1.20472 0.77787 0.86935 0.84955 1.90776 1.50964 1.17151 1.85177 1.20499 0.98490 0.90614 0.88274 0.83642 1.30573 1.07813 1.12815 1.22735 1.07133 0.74652 0.76466 0.78063 1.93642 1.43657 1.71965 1.85274 1.93635 1.56181 1.68283 1.75766 1.30451 1.13215 1.17763 1.13649 1.18800 0.80509 0.86356 0.81605 1.90832 1.46314 1.38494 1.69980 1.44952 1.58378 1.26956 1.05164 0.90782 0.90349 0.93302 0.88875 0.89400 0.93676 0.91760 0.95480 0.96541 0.79660 0.94041 0.74328 0.80776 0.78281 0.80030 0.77915 0.75064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 71.98 0.68 -1.14 16 2 C 0.14 2.18 2.57 44.99 0.12 2.29 16 3 H 0.07 1.40 7.58 -2.39 -0.02 1.38 16 4 C -0.11 -1.80 4.75 30.59 0.15 -1.66 16 5 C -0.12 -3.04 5.21 30.59 0.16 -2.88 16 6 C 0.15 5.35 6.26 86.38 0.54 5.89 16 7 N -0.75 -37.32 5.60 -343.45 -1.92 -39.25 16 8 C -0.25 -13.54 9.99 84.03 0.84 -12.70 16 9 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 10 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 11 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 12 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 13 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 14 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 16 N -0.70 -8.38 4.53 -442.53 -2.00 -10.39 16 17 C 0.52 7.73 6.88 87.66 0.60 8.33 16 18 O -0.56 -13.25 15.88 -3.03 -0.05 -13.30 16 19 C 0.13 1.30 3.18 44.52 0.14 1.44 16 20 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 21 C -0.61 -1.79 5.78 71.91 0.42 -1.38 16 22 S 2.46 19.19 5.43 -56.49 -0.31 18.88 16 23 O -0.95 -15.20 17.92 -127.41 -2.28 -17.49 16 24 O -0.94 -12.42 18.11 -127.41 -2.31 -14.73 16 25 C -0.62 -4.90 6.51 71.04 0.46 -4.44 16 26 C 0.54 9.27 7.64 87.92 0.67 9.94 16 27 O -0.58 -15.66 17.60 -3.03 -0.05 -15.71 16 28 N -0.70 -10.78 4.64 -454.69 -2.11 -12.89 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.65 7.75 -2.39 -0.02 1.63 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.37 19.82 7.67 -92.71 -0.71 19.10 16 39 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.42 2.67 8.60 -92.71 -0.80 1.87 16 41 H 0.17 -0.13 8.13 -2.39 -0.02 -0.15 16 42 H 0.20 -0.77 8.14 -2.38 -0.02 -0.79 16 43 H 0.18 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.20 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.41 7.75 7.91 -92.71 -0.73 7.02 16 Total: -1.00 -90.95 388.89 -4.68 -95.63 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -1.20 Total: 20.98 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.24 Total: -0.29 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -5.75 Total: -121.69 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -4.69 Total: -61.23 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 19.19 SS G_CDS: -0.31 Total: 18.88 kcal Total: -90.95 -4.68 -95.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700672066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.981 kcal (2) G-P(sol) polarization free energy of solvation -90.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds