Wall clock time and date at job start Wed Apr 1 2020 06:11:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.46841 * 2 1
4 4 S 1.81403 * 109.47052 * 119.99210 * 2 1 3
5 5 O 1.42103 * 108.58188 * 305.51643 * 4 2 1
6 6 O 1.42102 * 108.57809 * 174.49228 * 4 2 1
7 7 C 1.81404 * 101.92066 * 60.00612 * 4 2 1
8 8 C 1.50692 * 109.46988 * 180.02562 * 7 4 2
9 9 O 1.21281 * 120.00514 * 359.97438 * 8 7 4
10 10 N 1.34783 * 120.00098 * 180.02562 * 8 7 4
11 11 C 1.46500 * 120.00149 * 179.97438 * 10 8 7
12 12 C 1.53514 * 114.16836 * 204.99631 * 11 10 8
13 13 N 1.47482 * 87.93039 * 220.13972 * 12 11 10
14 14 C 1.46901 * 110.99764 * 138.70591 * 13 12 11
15 15 C 1.50701 * 109.46921 * 169.99672 * 14 13 12
16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13
17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13
18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14
19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15
20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15
21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47117 * 59.99412 * 22 20 18
24 24 H 1.48498 * 109.47600 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.46756 * 300.00019 * 22 20 18
26 26 C 1.47480 * 87.83699 * 27.01095 * 13 12 11
27 27 H 1.08994 * 109.47356 * 300.00101 * 1 2 3
28 28 H 1.08997 * 109.47440 * 60.00915 * 1 2 3
29 29 H 1.09002 * 109.46520 * 180.02562 * 1 2 3
30 30 H 1.08992 * 109.47807 * 239.99661 * 2 1 3
31 31 H 1.08998 * 109.46934 * 180.02562 * 3 2 1
32 32 H 1.09002 * 109.46680 * 299.99416 * 3 2 1
33 33 H 1.08992 * 109.47197 * 59.99287 * 3 2 1
34 34 H 1.08996 * 109.46938 * 59.99794 * 7 4 2
35 35 H 1.09001 * 109.46778 * 299.99820 * 7 4 2
36 36 H 0.96996 * 119.99685 * 359.97438 * 10 8 7
37 37 H 1.08999 * 113.25779 * 337.94959 * 11 10 8
38 38 H 1.08994 * 113.47382 * 105.36815 * 12 11 10
39 39 H 1.09003 * 113.47448 * 334.90723 * 12 11 10
40 40 H 1.09002 * 109.47401 * 49.99700 * 14 13 12
41 41 H 1.09001 * 109.46874 * 289.99713 * 14 13 12
42 42 H 0.96995 * 120.00011 * 0.02562 * 17 15 14
43 43 H 0.97000 * 119.99884 * 180.02562 * 21 20 18
44 44 H 1.08999 * 113.47664 * 87.75895 * 26 13 12
45 45 H 1.08994 * 113.47488 * 218.22090 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 16 2.1347 -0.8549 1.4813
5 8 1.5478 -0.2492 2.6250
6 8 3.5496 -0.9569 1.3993
7 6 1.4230 -2.5108 1.2750
8 6 1.8271 -3.3796 2.4380
9 8 2.5267 -2.9267 3.3191
10 7 1.4119 -4.6605 2.4986
11 6 1.8052 -5.5053 3.6289
12 6 1.8090 -7.0088 3.3185
13 7 1.2308 -7.2322 4.6567
14 6 0.1799 -8.2576 4.6116
15 6 -0.2142 -8.6351 6.0163
16 8 0.3269 -8.1021 6.9620
17 7 -1.1685 -9.5644 6.2218
18 6 -1.5274 -9.9075 7.4997
19 1 -1.0450 -9.4334 8.3417
20 6 -2.5108 -10.8658 7.7116
21 7 -3.0974 -11.4430 6.6870
22 14 -3.0003 -11.3328 9.4528
23 1 -3.5104 -10.1323 10.1624
24 1 -4.0630 -12.3691 9.4072
25 1 -1.8169 -11.8679 10.1729
26 6 0.6523 -5.8783 4.5715
27 1 -0.3634 0.5138 0.8899
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3632 -1.0277 0.0005
30 1 1.8934 -0.5138 -0.8898
31 1 3.1299 1.4426 -0.0005
32 1 1.6766 1.9563 -0.8901
33 1 1.6765 1.9564 0.8898
34 1 1.7895 -2.9508 0.3476
35 1 0.3361 -2.4369 1.2374
36 1 0.8527 -5.0228 1.7937
37 1 2.7019 -5.1525 4.1385
38 1 2.8094 -7.4256 3.2025
39 1 1.1393 -7.2857 2.5043
40 1 0.5539 -9.1385 4.0900
41 1 -0.6889 -7.8643 4.0837
42 1 -1.6015 -9.9904 5.4655
43 1 -3.7843 -12.1118 6.8349
44 1 -0.3261 -5.8536 4.0917
45 1 0.6724 -5.3371 5.5174
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713856167.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:11:42
Heat of formation + Delta-G solvation = -96.932810 kcal
Electronic energy + Delta-G solvation = -27848.534875 eV
Core-core repulsion = 23609.262535 eV
Total energy + Delta-G solvation = -4239.272340 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 4.15 seconds
Orbital eigenvalues (eV)
-40.81690 -39.40772 -37.74338 -37.36918 -36.35773 -35.66830 -34.47041 -33.85553
-31.48017 -31.16684 -29.55800 -27.89684 -26.00017 -25.55348 -23.77630 -23.17774
-21.26783 -20.42361 -19.29014 -19.09030 -18.06123 -17.93643 -17.31114 -16.96385
-16.51028 -16.20509 -16.01868 -15.72357 -15.33875 -15.02599 -14.70150 -14.55097
-14.25777 -13.94969 -13.85461 -13.71176 -13.42267 -13.15257 -13.00390 -12.95959
-12.68691 -12.38482 -12.33603 -12.30825 -12.09952 -12.04634 -11.68945 -11.56549
-11.49012 -11.28554 -11.06033 -10.76148 -10.71506 -10.59865 -10.43795 -10.20974
-9.49183 -9.39794 -8.91259 -8.24230 -7.96298 -6.41810 -3.82501 -0.59028
2.02005 2.25429 2.49888 3.20665 3.25953 3.30500 3.32686 3.47629
3.85596 3.88506 3.90725 3.94513 4.08849 4.20806 4.30726 4.38704
4.43905 4.51943 4.71514 4.83395 4.89411 4.91846 4.99577 5.11100
5.11379 5.25170 5.25843 5.39277 5.42026 5.51288 5.59779 5.61714
5.74544 5.97513 6.10317 6.23629 6.44237 6.91987 7.06249 7.55270
7.63409 8.05745 8.61934 9.18505 9.53959 10.06566 10.75974
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.026988 B = 0.001690 C = 0.001667
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1037.247372 B =16566.768799 C =16792.525463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.582 4.582
3 C -0.144 4.144
4 S 2.449 3.551
5 O -0.913 6.913
6 O -0.919 6.919
7 C -0.665 4.665
8 C 0.543 3.457
9 O -0.522 6.522
10 N -0.706 5.706
11 C 0.113 3.887
12 C -0.013 4.013
13 N -0.433 5.433
14 C 0.011 3.989
15 C 0.445 3.555
16 O -0.572 6.572
17 N -0.566 5.566
18 C -0.298 4.298
19 H 0.102 0.898
20 C 0.022 3.978
21 N -0.904 5.904
22 Si 0.931 3.069
23 H -0.274 1.274
24 H -0.285 1.285
25 H -0.273 1.273
26 C -0.009 4.009
27 H 0.081 0.919
28 H 0.081 0.919
29 H 0.069 0.931
30 H 0.137 0.863
31 H 0.075 0.925
32 H 0.083 0.917
33 H 0.076 0.924
34 H 0.161 0.839
35 H 0.162 0.838
36 H 0.404 0.596
37 H 0.135 0.865
38 H 0.096 0.904
39 H 0.072 0.928
40 H 0.090 0.910
41 H 0.060 0.940
42 H 0.391 0.609
43 H 0.271 0.729
44 H 0.071 0.929
45 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.872 19.697 -23.512 31.057
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.691 4.691
3 C -0.202 4.202
4 S 2.625 3.375
5 O -0.910 6.910
6 O -0.916 6.916
7 C -0.792 4.792
8 C 0.327 3.673
9 O -0.398 6.398
10 N -0.357 5.357
11 C 0.008 3.992
12 C -0.143 4.143
13 N -0.155 5.155
14 C -0.121 4.121
15 C 0.230 3.770
16 O -0.455 6.455
17 N -0.204 5.204
18 C -0.428 4.428
19 H 0.120 0.880
20 C -0.179 4.179
21 N -0.546 5.546
22 Si 0.758 3.242
23 H -0.199 1.199
24 H -0.210 1.210
25 H -0.199 1.199
26 C -0.139 4.139
27 H 0.100 0.900
28 H 0.100 0.900
29 H 0.088 0.912
30 H 0.155 0.845
31 H 0.094 0.906
32 H 0.102 0.898
33 H 0.095 0.905
34 H 0.179 0.821
35 H 0.180 0.820
36 H 0.239 0.761
37 H 0.152 0.848
38 H 0.114 0.886
39 H 0.090 0.910
40 H 0.108 0.892
41 H 0.078 0.922
42 H 0.224 0.776
43 H 0.081 0.919
44 H 0.089 0.911
45 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 6.517 20.283 -20.964 29.889
hybrid contribution -2.184 -1.218 -1.601 2.969
sum 4.333 19.065 -22.565 29.857
Atomic orbital electron populations
1.21774 0.89885 1.03644 1.05386 1.30181 1.07095 1.10344 1.21440
1.21646 1.02278 0.91412 1.04872 1.07746 0.76065 0.76494 0.77153
1.93590 1.79178 1.73406 1.44868 1.93588 1.26360 1.85167 1.86478
1.30942 1.16185 1.24505 1.07540 1.19126 0.80006 0.82800 0.85373
1.90901 1.37063 1.72707 1.39168 1.45816 1.52962 1.10970 1.25905
1.22877 1.00165 0.89069 0.87081 1.24330 1.02471 0.94152 0.93330
1.68814 1.22702 1.01552 1.22439 1.22506 0.94323 0.97088 0.98180
1.19629 0.83714 0.84060 0.89602 1.90544 1.55960 1.55896 1.43120
1.41852 1.33973 1.35599 1.08964 1.19659 1.18458 1.19992 0.84682
0.87971 1.25246 0.96617 0.96597 0.99486 1.69603 1.26726 1.27817
1.30412 0.85913 0.78210 0.78226 0.81855 1.19921 1.20998 1.19869
1.24423 0.96508 0.91990 1.00970 0.90044 0.89988 0.91233 0.84488
0.90631 0.89843 0.90547 0.82145 0.82041 0.76097 0.84751 0.88599
0.91024 0.89179 0.92234 0.77594 0.91877 0.91051 0.88473
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 43.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.39 8.94 37.16 0.33 -0.06 16
2 C -0.58 -2.23 3.31 -26.73 -0.09 -2.32 16
3 C -0.14 -0.63 9.20 37.16 0.34 -0.29 16
4 S 2.45 20.83 3.48 -107.50 -0.37 20.46 16
5 O -0.91 -11.47 17.76 -59.54 -1.06 -12.53 16
6 O -0.92 -11.41 17.95 -59.52 -1.07 -12.48 16
7 C -0.66 -3.55 5.84 36.00 0.21 -3.34 16
8 C 0.54 5.77 7.85 -10.99 -0.09 5.68 16
9 O -0.52 -8.20 15.22 2.56 0.04 -8.16 16
10 N -0.71 -6.13 5.39 -53.54 -0.29 -6.42 16
11 C 0.11 1.32 4.59 -67.72 -0.31 1.01 16
12 C -0.01 -0.14 7.45 -7.54 -0.06 -0.20 16
13 N -0.43 -6.99 5.82 -246.09 -1.43 -8.43 16
14 C 0.01 0.19 5.30 -4.97 -0.03 0.17 16
15 C 0.45 10.60 7.85 -10.98 -0.09 10.51 16
16 O -0.57 -16.01 16.01 5.55 0.09 -15.92 16
17 N -0.57 -14.36 5.29 -10.96 -0.06 -14.41 16
18 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16
19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16
20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
21 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16
22 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16
23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
26 C -0.01 -0.13 7.53 -7.54 -0.06 -0.18 16
27 H 0.08 0.28 8.06 -51.93 -0.42 -0.14 16
28 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16
29 H 0.07 0.03 6.55 -51.93 -0.34 -0.31 16
30 H 0.14 0.14 8.14 -51.93 -0.42 -0.28 16
31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16
32 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16
33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
34 H 0.16 0.18 8.14 -51.93 -0.42 -0.24 16
35 H 0.16 0.28 6.87 -51.92 -0.36 -0.07 16
36 H 0.40 1.97 8.75 -40.82 -0.36 1.61 16
37 H 0.13 1.82 7.45 -51.93 -0.39 1.44 16
38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16
39 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16
40 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16
41 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16
42 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16
43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16
44 H 0.07 0.89 7.42 -51.93 -0.39 0.51 16
45 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16
LS Contribution 390.76 15.07 5.89 5.89
Total: -1.00 -41.28 390.76 -9.30 -50.58
By element:
Atomic # 1 Polarization: 12.74 SS G_CDS: -6.67 Total: 6.07 kcal
Atomic # 6 Polarization: 3.01 SS G_CDS: -0.07 Total: 2.95 kcal
Atomic # 7 Polarization: -51.97 SS G_CDS: -1.05 Total: -53.02 kcal
Atomic # 8 Polarization: -47.09 SS G_CDS: -2.00 Total: -49.08 kcal
Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal
Atomic # 16 Polarization: 20.83 SS G_CDS: -0.37 Total: 20.46 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -41.28 -9.30 -50.58 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713856167.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.353 kcal
(2) G-P(sol) polarization free energy of solvation -41.281 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.580 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.933 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.16 seconds