Wall clock time and date at job start Wed Apr 1 2020 06:11:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.46841 * 2 1
4 4 S 1.81403 * 109.47052 * 119.99210 * 2 1 3
5 5 O 1.42103 * 108.58188 * 305.51643 * 4 2 1
6 6 O 1.42102 * 108.57809 * 174.49228 * 4 2 1
7 7 C 1.81404 * 101.92066 * 60.00612 * 4 2 1
8 8 C 1.50692 * 109.46988 * 180.02562 * 7 4 2
9 9 O 1.21281 * 120.00514 * 359.97438 * 8 7 4
10 10 N 1.34783 * 120.00098 * 180.02562 * 8 7 4
11 11 C 1.46500 * 120.00149 * 179.97438 * 10 8 7
12 12 C 1.53514 * 114.16836 * 204.99631 * 11 10 8
13 13 N 1.47482 * 87.93039 * 220.13972 * 12 11 10
14 14 C 1.46901 * 110.99764 * 138.70591 * 13 12 11
15 15 C 1.50701 * 109.46921 * 169.99672 * 14 13 12
16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13
17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13
18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14
19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15
20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15
21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47117 * 59.99412 * 22 20 18
24 24 H 1.48498 * 109.47600 * 179.97438 * 22 20 18
25 25 H 1.48503 * 109.46756 * 300.00019 * 22 20 18
26 26 C 1.47480 * 87.83699 * 27.01095 * 13 12 11
27 27 H 1.08994 * 109.47356 * 300.00101 * 1 2 3
28 28 H 1.08997 * 109.47440 * 60.00915 * 1 2 3
29 29 H 1.09002 * 109.46520 * 180.02562 * 1 2 3
30 30 H 1.08992 * 109.47807 * 239.99661 * 2 1 3
31 31 H 1.08998 * 109.46934 * 180.02562 * 3 2 1
32 32 H 1.09002 * 109.46680 * 299.99416 * 3 2 1
33 33 H 1.08992 * 109.47197 * 59.99287 * 3 2 1
34 34 H 1.08996 * 109.46938 * 59.99794 * 7 4 2
35 35 H 1.09001 * 109.46778 * 299.99820 * 7 4 2
36 36 H 0.96996 * 119.99685 * 359.97438 * 10 8 7
37 37 H 1.08999 * 113.25779 * 337.94959 * 11 10 8
38 38 H 1.08994 * 113.47382 * 105.36815 * 12 11 10
39 39 H 1.09003 * 113.47448 * 334.90723 * 12 11 10
40 40 H 1.09002 * 109.47401 * 49.99700 * 14 13 12
41 41 H 1.09001 * 109.46874 * 289.99713 * 14 13 12
42 42 H 0.96995 * 120.00011 * 0.02562 * 17 15 14
43 43 H 0.97000 * 119.99884 * 180.02562 * 21 20 18
44 44 H 1.08999 * 113.47664 * 87.75895 * 26 13 12
45 45 H 1.08994 * 113.47488 * 218.22090 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 16 2.1347 -0.8549 1.4813
5 8 1.5478 -0.2492 2.6250
6 8 3.5496 -0.9569 1.3993
7 6 1.4230 -2.5108 1.2750
8 6 1.8271 -3.3796 2.4380
9 8 2.5267 -2.9267 3.3191
10 7 1.4119 -4.6605 2.4986
11 6 1.8052 -5.5053 3.6289
12 6 1.8090 -7.0088 3.3185
13 7 1.2308 -7.2322 4.6567
14 6 0.1799 -8.2576 4.6116
15 6 -0.2142 -8.6351 6.0163
16 8 0.3269 -8.1021 6.9620
17 7 -1.1685 -9.5644 6.2218
18 6 -1.5274 -9.9075 7.4997
19 1 -1.0450 -9.4334 8.3417
20 6 -2.5108 -10.8658 7.7116
21 7 -3.0974 -11.4430 6.6870
22 14 -3.0003 -11.3328 9.4528
23 1 -3.5104 -10.1323 10.1624
24 1 -4.0630 -12.3691 9.4072
25 1 -1.8169 -11.8679 10.1729
26 6 0.6523 -5.8783 4.5715
27 1 -0.3634 0.5138 0.8899
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3632 -1.0277 0.0005
30 1 1.8934 -0.5138 -0.8898
31 1 3.1299 1.4426 -0.0005
32 1 1.6766 1.9563 -0.8901
33 1 1.6765 1.9564 0.8898
34 1 1.7895 -2.9508 0.3476
35 1 0.3361 -2.4369 1.2374
36 1 0.8527 -5.0228 1.7937
37 1 2.7019 -5.1525 4.1385
38 1 2.8094 -7.4256 3.2025
39 1 1.1393 -7.2857 2.5043
40 1 0.5539 -9.1385 4.0900
41 1 -0.6889 -7.8643 4.0837
42 1 -1.6015 -9.9904 5.4655
43 1 -3.7843 -12.1118 6.8349
44 1 -0.3261 -5.8536 4.0917
45 1 0.6724 -5.3371 5.5174
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713856167.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:11:38
Heat of formation + Delta-G solvation = -136.066323 kcal
Electronic energy + Delta-G solvation = -27850.231831 eV
Core-core repulsion = 23609.262535 eV
Total energy + Delta-G solvation = -4240.969296 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 2.31 seconds
Orbital eigenvalues (eV)
-41.82710 -40.50186 -39.51025 -38.08249 -37.05638 -36.01454 -35.95739 -35.32084
-33.30299 -32.15118 -30.65442 -28.17857 -27.28755 -26.98898 -25.19635 -23.62766
-22.12851 -21.42665 -21.01782 -19.91983 -19.68953 -18.70753 -18.17644 -17.81571
-17.62250 -17.19446 -16.89441 -16.57731 -16.53720 -16.39472 -15.86058 -15.72637
-15.47239 -15.11577 -14.87394 -14.35686 -14.22022 -14.12888 -13.85596 -13.76050
-13.64751 -13.51129 -13.20347 -13.13377 -13.03883 -13.02280 -12.78391 -12.47581
-12.41271 -12.34178 -12.32249 -12.13070 -12.03651 -11.87546 -11.52231 -11.50627
-11.11638 -10.41009 -10.28015 -10.01396 -9.79864 -8.47379 -5.95776 -1.13949
1.25607 1.38729 1.40642 1.51201 1.72042 1.79859 2.05959 2.28607
2.72524 2.90536 3.00175 3.18550 3.26105 3.42488 3.47682 3.60241
3.65578 3.74390 4.00680 4.05629 4.20085 4.22805 4.26053 4.27241
4.37440 4.52784 4.63547 4.66171 4.66763 4.76913 4.77885 4.85386
4.89830 5.13095 5.24773 5.29236 5.31235 5.40260 5.85739 6.05891
6.23372 6.61033 6.97241 7.13187 7.56558 8.14234 8.69636
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.026988 B = 0.001690 C = 0.001667
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1037.247372 B =16566.768799 C =16792.525463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.541 4.541
3 C -0.160 4.160
4 S 2.414 3.586
5 O -0.977 6.977
6 O -0.979 6.979
7 C -0.644 4.644
8 C 0.528 3.472
9 O -0.586 6.586
10 N -0.685 5.685
11 C 0.122 3.878
12 C 0.006 3.994
13 N -0.478 5.478
14 C 0.026 3.974
15 C 0.437 3.563
16 O -0.623 6.623
17 N -0.574 5.574
18 C -0.336 4.336
19 H 0.074 0.926
20 C -0.010 4.010
21 N -0.918 5.918
22 Si 0.990 3.010
23 H -0.274 1.274
24 H -0.267 1.267
25 H -0.274 1.274
26 C -0.013 4.013
27 H 0.065 0.935
28 H 0.103 0.897
29 H 0.101 0.899
30 H 0.180 0.820
31 H 0.068 0.932
32 H 0.111 0.889
33 H 0.063 0.937
34 H 0.215 0.785
35 H 0.207 0.793
36 H 0.428 0.572
37 H 0.105 0.895
38 H 0.104 0.896
39 H 0.114 0.886
40 H 0.117 0.883
41 H 0.092 0.908
42 H 0.398 0.602
43 H 0.278 0.722
44 H 0.096 0.904
45 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.880 18.804 -27.874 33.747
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.654 4.654
3 C -0.219 4.219
4 S 2.600 3.400
5 O -0.974 6.974
6 O -0.976 6.976
7 C -0.773 4.773
8 C 0.315 3.685
9 O -0.466 6.466
10 N -0.337 5.337
11 C 0.016 3.984
12 C -0.123 4.123
13 N -0.201 5.201
14 C -0.105 4.105
15 C 0.225 3.775
16 O -0.509 6.509
17 N -0.212 5.212
18 C -0.466 4.466
19 H 0.092 0.908
20 C -0.210 4.210
21 N -0.559 5.559
22 Si 0.814 3.186
23 H -0.199 1.199
24 H -0.192 1.192
25 H -0.199 1.199
26 C -0.143 4.143
27 H 0.084 0.916
28 H 0.122 0.878
29 H 0.119 0.881
30 H 0.198 0.802
31 H 0.087 0.913
32 H 0.130 0.870
33 H 0.082 0.918
34 H 0.232 0.768
35 H 0.224 0.776
36 H 0.268 0.732
37 H 0.123 0.877
38 H 0.122 0.878
39 H 0.132 0.868
40 H 0.135 0.865
41 H 0.110 0.890
42 H 0.232 0.768
43 H 0.087 0.913
44 H 0.114 0.886
45 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 4.524 19.371 -25.354 32.227
hybrid contribution -1.588 -0.893 -0.325 1.851
sum 2.936 18.479 -25.679 31.772
Atomic orbital electron populations
1.21998 0.88248 1.05973 1.05672 1.29880 1.08100 1.09069 1.18364
1.21847 1.02180 0.92205 1.05648 1.08253 0.75295 0.77989 0.78503
1.93514 1.79525 1.75144 1.49252 1.93514 1.30055 1.86318 1.87714
1.30779 1.18763 1.20539 1.07260 1.20027 0.79013 0.83456 0.86034
1.90896 1.39877 1.73948 1.41921 1.45567 1.52644 1.10136 1.25380
1.22424 0.97972 0.90444 0.87588 1.24346 1.03441 0.92589 0.91891
1.68721 1.23019 1.01781 1.26532 1.22388 0.96082 0.98714 0.93334
1.20922 0.82044 0.82335 0.92218 1.90511 1.57335 1.57271 1.45814
1.41909 1.34693 1.36303 1.08253 1.19588 1.19978 1.21560 0.85425
0.90806 1.25972 0.95911 0.95859 1.03274 1.69648 1.26671 1.27733
1.31815 0.85032 0.78076 0.78114 0.77365 1.19936 1.19167 1.19936
1.24468 0.98630 0.91208 1.00038 0.91614 0.87828 0.88052 0.80234
0.91299 0.87007 0.91793 0.76767 0.77576 0.73199 0.87686 0.87786
0.86781 0.86543 0.88989 0.76829 0.91251 0.88647 0.92530
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.16 8.94 71.98 0.64 0.49 16
2 C -0.54 -2.43 3.31 30.60 0.10 -2.32 16
3 C -0.16 -1.18 9.20 71.98 0.66 -0.52 16
4 S 2.41 40.50 3.48 -56.49 -0.20 40.30 16
5 O -0.98 -26.61 17.76 -125.74 -2.23 -28.84 16
6 O -0.98 -25.79 17.95 -125.76 -2.26 -28.05 16
7 C -0.64 -4.59 5.84 71.23 0.42 -4.17 16
8 C 0.53 10.55 7.85 87.65 0.69 11.24 16
9 O -0.59 -19.51 15.22 -0.16 0.00 -19.51 16
10 N -0.68 -10.00 5.39 -441.69 -2.38 -12.38 16
11 C 0.12 2.75 4.59 45.45 0.21 2.96 16
12 C 0.01 0.12 7.45 83.58 0.62 0.74 16
13 N -0.48 -14.94 5.82 -932.48 -5.43 -20.37 16
14 C 0.03 0.85 5.30 85.56 0.45 1.30 16
15 C 0.44 21.06 7.85 87.66 0.69 21.74 16
16 O -0.62 -36.31 16.01 -3.07 -0.05 -36.36 16
17 N -0.57 -29.37 5.29 -306.98 -1.62 -30.99 16
18 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16
19 H 0.07 4.58 7.16 -2.91 -0.02 4.56 16
20 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16
21 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16
22 Si 0.99 43.31 29.55 68.60 2.03 45.34 16
23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
24 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16
25 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16
26 C -0.01 -0.37 7.53 83.58 0.63 0.25 16
27 H 0.06 0.32 8.06 -2.39 -0.02 0.30 16
28 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16
29 H 0.10 -0.54 6.55 -2.39 -0.02 -0.55 16
30 H 0.18 -0.64 8.14 -2.39 -0.02 -0.66 16
31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16
32 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16
33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
34 H 0.22 -0.85 8.14 -2.39 -0.02 -0.87 16
35 H 0.21 -0.44 6.87 -2.39 -0.02 -0.45 16
36 H 0.43 1.94 8.75 -92.71 -0.81 1.13 16
37 H 0.11 3.03 7.45 -2.39 -0.02 3.02 16
38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16
39 H 0.11 1.24 7.90 -2.39 -0.02 1.22 16
40 H 0.12 3.13 8.08 -2.39 -0.02 3.11 16
41 H 0.09 2.36 7.30 -2.39 -0.02 2.34 16
42 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16
43 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16
44 H 0.10 2.17 7.42 -2.39 -0.02 2.15 16
45 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16
Total: -1.00 -101.53 390.76 -5.98 -107.51
By element:
Atomic # 1 Polarization: 19.41 SS G_CDS: -0.51 Total: 18.90 kcal
Atomic # 6 Polarization: 6.73 SS G_CDS: 6.39 Total: 13.13 kcal
Atomic # 7 Polarization: -103.27 SS G_CDS: -9.15 Total: -112.42 kcal
Atomic # 8 Polarization: -108.22 SS G_CDS: -4.54 Total: -112.76 kcal
Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal
Atomic # 16 Polarization: 40.50 SS G_CDS: -0.20 Total: 40.30 kcal
Total: -101.53 -5.98 -107.51 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713856167.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.556 kcal
(2) G-P(sol) polarization free energy of solvation -101.531 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.087 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.066 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.31 seconds