Wall clock time and date at job start Wed Apr 1 2020 06:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46899 * 109.47254 * 184.99955 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46800 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00338 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99855 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00193 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00238 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00205 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99909 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00181 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47138 * 89.99534 * 14 12 10 16 16 H 1.48502 * 109.46886 * 209.99398 * 14 12 10 17 17 H 1.48495 * 109.47039 * 329.99454 * 14 12 10 18 18 N 1.46503 * 109.46834 * 119.99503 * 2 1 3 19 19 C 1.34773 * 120.00358 * 274.99972 * 18 2 1 20 20 O 1.21287 * 119.99899 * 0.02562 * 19 18 2 21 21 C 1.50701 * 120.00419 * 179.97438 * 19 18 2 22 22 H 1.09000 * 110.27890 * 39.30487 * 21 19 18 23 23 C 1.54158 * 110.31849 * 277.18940 * 21 19 18 24 24 C 1.54022 * 108.63097 * 213.26369 * 23 21 19 25 25 C 1.55055 * 106.69346 * 47.05292 * 24 23 21 26 26 S 1.82919 * 110.32173 * 161.41470 * 21 19 18 27 27 O 1.42093 * 109.35626 * 234.42747 * 26 21 19 28 28 O 1.42102 * 109.35161 * 7.49695 * 26 21 19 29 29 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 31 31 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 32 32 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 33 33 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 34 34 H 1.00902 * 111.00582 * 303.95797 * 5 4 2 35 35 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 36 36 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 37 37 H 0.97000 * 119.99567 * 0.02562 * 9 7 6 38 38 H 0.96998 * 120.00315 * 179.97438 * 13 12 10 39 39 H 0.97007 * 119.99919 * 95.00541 * 18 2 1 40 40 H 1.09003 * 109.64981 * 333.03608 * 23 21 19 41 41 H 1.09003 * 109.65030 * 93.33682 * 23 21 19 42 42 H 1.09001 * 109.95397 * 287.75948 * 24 23 21 43 43 H 1.09002 * 110.03006 * 166.38473 * 24 23 21 44 44 H 1.09008 * 110.78530 * 199.34673 * 25 24 23 45 45 H 1.08993 * 110.79328 * 75.87922 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5041 -0.8266 -1.1903 6 6 4.0304 -1.5159 -2.3760 7 6 5.5316 -1.6054 -2.2798 8 8 6.1065 -1.1411 -1.3180 9 7 6.2355 -2.2014 -3.2627 10 6 7.6012 -2.2833 -3.1750 11 1 8.1131 -1.8699 -2.3186 12 6 8.3269 -2.8972 -4.1885 13 7 7.7040 -3.3998 -5.2309 14 14 10.1878 -3.0081 -4.0695 15 1 10.5653 -4.2660 -3.3764 16 1 10.7724 -3.0004 -5.4345 17 1 10.7048 -1.8462 -3.3029 18 7 2.0182 -0.6905 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8581 1.1585 2.4117 21 6 2.6487 -0.7286 3.5879 22 1 3.4477 -1.4217 3.3247 23 6 1.4944 -1.4802 4.2801 24 6 1.7383 -1.4637 5.8007 25 6 2.1047 -0.0049 6.1772 26 16 3.2405 0.4830 4.8239 27 8 4.5757 0.1659 5.1924 28 8 2.9198 1.7965 4.3867 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2950 34 1 3.9281 0.0826 -1.0822 35 1 3.6096 -2.5200 -2.4293 36 1 3.7558 -0.9588 -3.2718 37 1 5.7757 -2.5723 -4.0320 38 1 8.2106 -3.8280 -5.9386 39 1 2.2490 -1.6317 1.1528 40 1 0.5488 -0.9865 4.0558 41 1 1.4615 -2.5098 3.9236 42 1 2.5615 -2.1323 6.0527 43 1 0.8341 -1.7693 6.3273 44 1 2.6135 0.0299 7.1407 45 1 1.2170 0.6275 6.1842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715962795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:51:11 Heat of formation + Delta-G solvation = -138.698482 kcal Electronic energy + Delta-G solvation = -28624.629827 eV Core-core repulsion = 24383.546391 eV Total energy + Delta-G solvation = -4241.083435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.13405 -38.35886 -37.19855 -36.98253 -36.37662 -35.91012 -34.33721 -33.68776 -31.72294 -31.22057 -29.99420 -27.64510 -26.13925 -25.05360 -23.34229 -22.29705 -21.72168 -20.64691 -19.29357 -18.93778 -17.93950 -17.83656 -17.29996 -16.55604 -16.45206 -15.90719 -15.50150 -15.31779 -15.08275 -14.64052 -14.58454 -14.52614 -14.20519 -14.03452 -13.84700 -13.53332 -13.31859 -13.10071 -12.77920 -12.61921 -12.42951 -12.25419 -12.19635 -12.07261 -12.01751 -11.81718 -11.57938 -11.57315 -11.50097 -11.05306 -11.02522 -10.95945 -10.58036 -10.40125 -10.23333 -9.96017 -9.52763 -9.14805 -8.52059 -8.15232 -7.98387 -6.43687 -3.84505 -0.24337 2.28344 2.39086 2.86156 3.17165 3.26057 3.32387 3.40425 3.77392 3.87891 3.98668 4.02888 4.15130 4.23887 4.26785 4.37534 4.51832 4.71083 4.78007 4.99319 5.03545 5.06535 5.10931 5.19294 5.24593 5.25765 5.34089 5.40047 5.42913 5.50380 5.52626 5.73493 5.83301 5.91010 5.98189 6.22006 6.38257 7.08987 7.35993 7.53691 7.54157 8.04245 8.05414 8.58903 9.16121 9.51853 10.03184 10.74001 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.002377 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.748413 B =11774.841043 C =13161.349621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.090 0.910 4 C 0.048 3.952 5 N -0.669 5.669 6 C 0.051 3.949 7 C 0.439 3.561 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.696 5.696 19 C 0.535 3.465 20 O -0.507 6.507 21 C -0.602 4.602 22 H 0.163 0.837 23 C -0.100 4.100 24 C -0.119 4.119 25 C -0.594 4.594 26 S 2.408 3.592 27 O -0.930 6.930 28 O -0.892 6.892 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.352 0.648 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.407 0.593 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.138 0.862 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.824 0.831 16.814 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.083 4.083 5 N -0.302 5.302 6 C -0.082 4.082 7 C 0.224 3.776 8 O -0.466 6.466 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.348 5.348 19 C 0.318 3.682 20 O -0.382 6.382 21 C -0.711 4.711 22 H 0.181 0.819 23 C -0.139 4.139 24 C -0.158 4.158 25 C -0.724 4.724 26 S 2.586 3.414 27 O -0.927 6.927 28 O -0.889 6.889 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.243 0.757 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.156 0.844 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.856 2.024 17.619 25.886 hybrid contribution 0.131 -0.991 -1.310 1.648 sum -18.724 1.033 16.309 24.853 Atomic orbital electron populations 1.22140 0.94791 1.02240 1.02814 1.21031 0.93741 0.97725 0.83738 0.89186 1.22316 0.89599 1.00705 0.95631 1.60070 1.03014 1.27014 1.40073 1.21677 0.95366 0.99805 0.91345 1.19799 0.87993 0.84679 0.85091 1.90540 1.71084 1.51798 1.33162 1.41863 1.07429 1.50941 1.19769 1.19708 0.81501 1.35150 1.06517 0.87904 1.25265 1.00734 0.96744 0.95188 1.69610 1.36741 1.38648 1.09374 0.85854 0.82110 0.78921 0.77406 1.20373 1.20930 1.19372 1.45744 1.66150 1.14427 1.08476 1.19083 0.78844 0.86745 0.83539 1.90964 1.48870 1.14043 1.84319 1.30805 1.10434 1.18517 1.11294 0.81878 1.21904 0.96165 1.02463 0.93325 1.22231 1.05084 0.93500 0.94964 1.30726 1.17271 1.06441 1.17927 1.08941 0.76859 0.76925 0.78677 1.93646 1.31836 1.85464 1.81763 1.93710 1.84577 1.31825 1.78791 0.92289 0.91781 0.91438 0.93702 0.90404 0.82830 0.89602 0.93773 0.77487 0.91866 0.75744 0.89432 0.88269 0.89135 0.88197 0.84410 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 2 C 0.14 1.49 2.81 -67.93 -0.19 1.30 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 C 0.05 0.50 5.24 -3.83 -0.02 0.48 16 5 N -0.67 -9.92 5.85 -115.06 -0.67 -10.60 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 8 O -0.58 -15.68 15.78 5.55 0.09 -15.59 16 9 N -0.56 -14.10 5.29 -10.97 -0.06 -14.16 16 10 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 11 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 14 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 N -0.70 -7.28 4.80 -53.81 -0.26 -7.54 16 19 C 0.54 6.39 6.89 -10.99 -0.08 6.32 16 20 O -0.51 -7.93 13.85 -18.28 -0.25 -8.19 16 21 C -0.60 -5.21 3.60 -27.28 -0.10 -5.31 16 22 H 0.16 1.21 8.14 -51.93 -0.42 0.79 16 23 C -0.10 -0.49 5.95 -25.59 -0.15 -0.65 16 24 C -0.12 -0.47 6.48 -25.11 -0.16 -0.63 16 25 C -0.59 -3.25 7.31 38.24 0.28 -2.97 16 26 S 2.41 25.33 5.92 -107.50 -0.64 24.69 16 27 O -0.93 -12.91 18.14 -57.73 -1.05 -13.96 16 28 O -0.89 -13.49 15.38 -67.08 -1.03 -14.52 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.41 3.67 8.60 -40.82 -0.35 3.32 16 40 H 0.09 0.42 7.85 -51.93 -0.41 0.01 16 41 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.14 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -38.94 387.54 -9.57 -48.51 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.81 Total: 12.68 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.43 Total: 0.46 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.26 Total: -55.99 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -2.24 Total: -52.26 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 25.33 SS G_CDS: -0.64 Total: 24.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.94 -9.57 -48.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715962795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.192 kcal (2) G-P(sol) polarization free energy of solvation -38.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds