Wall clock time and date at job start Wed Apr 1 2020 06:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46899 * 109.47254 * 184.99955 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46800 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00338 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99855 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00193 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00238 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00205 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99909 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00181 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47138 * 89.99534 * 14 12 10 16 16 H 1.48502 * 109.46886 * 209.99398 * 14 12 10 17 17 H 1.48495 * 109.47039 * 329.99454 * 14 12 10 18 18 N 1.46503 * 109.46834 * 119.99503 * 2 1 3 19 19 C 1.34773 * 120.00358 * 274.99972 * 18 2 1 20 20 O 1.21287 * 119.99899 * 0.02562 * 19 18 2 21 21 C 1.50701 * 120.00419 * 179.97438 * 19 18 2 22 22 H 1.09000 * 110.27890 * 39.30487 * 21 19 18 23 23 C 1.54158 * 110.31849 * 277.18940 * 21 19 18 24 24 C 1.54022 * 108.63097 * 213.26369 * 23 21 19 25 25 C 1.55055 * 106.69346 * 47.05292 * 24 23 21 26 26 S 1.82919 * 110.32173 * 161.41470 * 21 19 18 27 27 O 1.42093 * 109.35626 * 234.42747 * 26 21 19 28 28 O 1.42102 * 109.35161 * 7.49695 * 26 21 19 29 29 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 31 31 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 32 32 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 33 33 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 34 34 H 1.00902 * 111.00582 * 303.95797 * 5 4 2 35 35 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 36 36 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 37 37 H 0.97000 * 119.99567 * 0.02562 * 9 7 6 38 38 H 0.96998 * 120.00315 * 179.97438 * 13 12 10 39 39 H 0.97007 * 119.99919 * 95.00541 * 18 2 1 40 40 H 1.09003 * 109.64981 * 333.03608 * 23 21 19 41 41 H 1.09003 * 109.65030 * 93.33682 * 23 21 19 42 42 H 1.09001 * 109.95397 * 287.75948 * 24 23 21 43 43 H 1.09002 * 110.03006 * 166.38473 * 24 23 21 44 44 H 1.09008 * 110.78530 * 199.34673 * 25 24 23 45 45 H 1.08993 * 110.79328 * 75.87922 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5041 -0.8266 -1.1903 6 6 4.0304 -1.5159 -2.3760 7 6 5.5316 -1.6054 -2.2798 8 8 6.1065 -1.1411 -1.3180 9 7 6.2355 -2.2014 -3.2627 10 6 7.6012 -2.2833 -3.1750 11 1 8.1131 -1.8699 -2.3186 12 6 8.3269 -2.8972 -4.1885 13 7 7.7040 -3.3998 -5.2309 14 14 10.1878 -3.0081 -4.0695 15 1 10.5653 -4.2660 -3.3764 16 1 10.7724 -3.0004 -5.4345 17 1 10.7048 -1.8462 -3.3029 18 7 2.0182 -0.6905 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8581 1.1585 2.4117 21 6 2.6487 -0.7286 3.5879 22 1 3.4477 -1.4217 3.3247 23 6 1.4944 -1.4802 4.2801 24 6 1.7383 -1.4637 5.8007 25 6 2.1047 -0.0049 6.1772 26 16 3.2405 0.4830 4.8239 27 8 4.5757 0.1659 5.1924 28 8 2.9198 1.7965 4.3867 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2950 34 1 3.9281 0.0826 -1.0822 35 1 3.6096 -2.5200 -2.4293 36 1 3.7558 -0.9588 -3.2718 37 1 5.7757 -2.5723 -4.0320 38 1 8.2106 -3.8280 -5.9386 39 1 2.2490 -1.6317 1.1528 40 1 0.5488 -0.9865 4.0558 41 1 1.4615 -2.5098 3.9236 42 1 2.5615 -2.1323 6.0527 43 1 0.8341 -1.7693 6.3273 44 1 2.6135 0.0299 7.1407 45 1 1.2170 0.6275 6.1842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715962795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:51:10 Heat of formation + Delta-G solvation = -172.862405 kcal Electronic energy + Delta-G solvation = -28626.111285 eV Core-core repulsion = 24383.546391 eV Total energy + Delta-G solvation = -4242.564894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.04656 -40.14301 -38.14590 -37.87781 -37.18474 -36.70067 -36.04274 -35.12600 -33.27444 -32.51115 -30.68306 -28.96197 -26.77186 -26.61019 -24.65098 -22.94839 -22.37675 -21.55351 -21.04859 -19.93334 -19.77526 -18.65713 -18.23042 -17.69733 -17.25020 -17.19741 -16.63679 -16.40686 -16.21777 -16.12363 -15.92524 -15.36846 -15.23805 -15.10999 -14.84767 -14.66975 -14.52357 -14.07095 -13.70531 -13.53728 -13.42064 -13.17624 -13.09436 -13.03783 -12.98358 -12.94512 -12.81682 -12.78883 -12.66028 -12.42970 -12.13978 -11.98880 -11.84916 -11.62760 -11.51932 -11.20150 -10.89655 -10.37124 -10.03655 -10.02336 -9.37377 -8.48158 -5.96526 -0.98380 1.36648 1.40775 1.49517 1.53192 1.59917 2.04284 2.05354 2.28093 2.71239 2.87627 3.08799 3.19430 3.41910 3.49736 3.62085 3.74140 3.81722 3.83879 4.08724 4.17370 4.23241 4.32600 4.38351 4.52299 4.58701 4.59736 4.65761 4.69282 4.76646 4.81432 4.99609 5.03741 5.05464 5.13995 5.29758 5.39880 5.53315 5.85880 6.07950 6.27794 6.50373 6.59435 7.12112 7.19884 7.55853 8.11844 8.69150 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.002377 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.748413 B =11774.841043 C =13161.349621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 H 0.060 0.940 4 C 0.054 3.946 5 N -0.681 5.681 6 C 0.067 3.933 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.270 1.270 16 H -0.270 1.270 17 H -0.276 1.276 18 N -0.690 5.690 19 C 0.527 3.473 20 O -0.551 6.551 21 C -0.590 4.590 22 H 0.173 0.827 23 C -0.097 4.097 24 C -0.118 4.118 25 C -0.555 4.555 26 S 2.374 3.626 27 O -0.982 6.982 28 O -0.957 6.957 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.338 0.662 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.416 0.584 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.135 0.865 44 H 0.160 0.840 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.153 -1.681 17.209 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.079 0.921 4 C -0.075 4.075 5 N -0.313 5.313 6 C -0.065 4.065 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.464 4.464 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.195 1.195 16 H -0.194 1.194 17 H -0.201 1.201 18 N -0.341 5.341 19 C 0.311 3.689 20 O -0.430 6.430 21 C -0.702 4.702 22 H 0.191 0.809 23 C -0.136 4.136 24 C -0.157 4.157 25 C -0.689 4.689 26 S 2.561 3.439 27 O -0.979 6.979 28 O -0.954 6.954 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.111 0.889 41 H 0.145 0.855 42 H 0.122 0.878 43 H 0.153 0.847 44 H 0.178 0.822 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.176 -0.498 17.962 27.772 hybrid contribution 0.755 -0.236 -1.396 1.604 sum -20.421 -0.734 16.566 26.306 Atomic orbital electron populations 1.22049 0.92590 1.03550 1.02763 1.21056 0.95352 0.96239 0.83793 0.92145 1.22401 0.86675 1.02347 0.96078 1.60086 1.05536 1.26210 1.39477 1.21544 0.90131 1.01928 0.92940 1.20994 0.90793 0.82409 0.83517 1.90514 1.72915 1.53086 1.34727 1.41924 1.06781 1.51743 1.20574 1.19628 0.83201 1.36933 1.06591 0.90631 1.25994 1.04746 0.95837 0.94536 1.69659 1.38230 1.38499 1.09609 0.84969 0.77044 0.78715 0.77873 1.19514 1.19440 1.20087 1.45758 1.65486 1.14733 1.08141 1.19592 0.78277 0.86404 0.84670 1.90949 1.50903 1.16000 1.85109 1.30659 1.12237 1.17823 1.09441 0.80940 1.22089 0.94355 1.03319 0.93789 1.22429 1.07224 0.91935 0.94067 1.30497 1.15463 1.07963 1.15021 1.09487 0.77329 0.76558 0.80560 1.93573 1.35707 1.85839 1.82736 1.93631 1.85300 1.35714 1.80735 0.90182 0.93169 0.90201 0.92120 0.87930 0.84402 0.86896 0.91535 0.76874 0.91264 0.74724 0.88939 0.85473 0.87814 0.84728 0.82165 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.48 71.98 0.68 -1.52 16 2 C 0.14 2.82 2.81 44.99 0.13 2.95 16 3 H 0.06 1.59 7.58 -2.39 -0.02 1.57 16 4 C 0.05 1.01 5.24 86.30 0.45 1.46 16 5 N -0.68 -19.54 5.85 -517.93 -3.03 -22.57 16 6 C 0.07 2.10 6.17 85.55 0.53 2.62 16 7 C 0.44 20.30 7.82 87.65 0.69 20.98 16 8 O -0.63 -34.82 15.78 -3.06 -0.05 -34.87 16 9 N -0.57 -29.01 5.29 -306.99 -1.62 -30.64 16 10 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 11 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 12 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 13 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 14 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 N -0.69 -13.99 4.80 -442.53 -2.12 -16.11 16 19 C 0.53 12.86 6.89 87.66 0.60 13.46 16 20 O -0.55 -18.39 13.85 19.73 0.27 -18.12 16 21 C -0.59 -10.02 3.60 30.24 0.11 -9.91 16 22 H 0.17 2.52 8.14 -2.39 -0.02 2.50 16 23 C -0.10 -0.66 5.95 31.33 0.19 -0.47 16 24 C -0.12 -0.43 6.48 31.64 0.20 -0.22 16 25 C -0.56 -4.72 7.31 72.69 0.53 -4.19 16 26 S 2.37 52.85 5.92 -56.49 -0.33 52.52 16 27 O -0.98 -29.38 18.14 -127.47 -2.31 -31.70 16 28 O -0.96 -31.86 15.38 -118.53 -1.82 -33.68 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.34 11.36 8.43 -89.69 -0.76 10.61 16 35 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 38 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.42 6.82 8.60 -92.70 -0.80 6.02 16 40 H 0.09 0.60 7.85 -2.39 -0.02 0.58 16 41 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.16 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -91.13 387.54 -4.57 -95.70 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -1.25 Total: 36.36 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.39 Total: 6.83 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -6.49 Total: -118.26 kcal Atomic # 8 Polarization: -114.45 SS G_CDS: -3.91 Total: -118.37 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 52.85 SS G_CDS: -0.33 Total: 52.52 kcal Total: -91.13 -4.57 -95.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715962795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.166 kcal (2) G-P(sol) polarization free energy of solvation -91.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds