Wall clock time and date at job start Wed Apr 1 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.36929 * 119.99904 * 275.00051 * 4 2 1 6 6 H 1.08004 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99984 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99951 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00021 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47254 * 89.99741 * 9 7 5 11 11 H 1.48501 * 109.47458 * 209.99436 * 9 7 5 12 12 H 1.48498 * 109.47288 * 329.99773 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 H 1.09004 * 110.89124 * 302.43330 * 13 2 1 15 15 C 1.55163 * 111.00073 * 66.34952 * 13 2 1 16 16 C 1.54324 * 102.93913 * 153.57866 * 15 13 2 17 17 N 1.47025 * 107.27463 * 337.80737 * 16 15 13 18 18 C 1.34772 * 125.64903 * 178.97569 * 17 16 15 19 19 O 1.21612 * 120.00289 * 179.97438 * 18 17 16 20 20 C 1.47425 * 120.00063 * 359.96253 * 18 17 16 21 21 N 1.36066 * 126.44809 * 359.68045 * 20 18 17 22 22 C 1.29934 * 108.47613 * 179.86301 * 21 20 18 23 23 O 1.34055 * 109.24396 * 0.41065 * 22 21 20 24 24 C 1.34260 * 108.22514 * 359.74661 * 23 22 21 25 25 C 1.50699 * 126.52400 * 180.02562 * 24 23 22 26 26 F 1.39899 * 109.46889 * 269.94948 * 25 24 23 27 27 F 1.39900 * 109.47321 * 29.95286 * 25 24 23 28 28 F 1.39902 * 109.47323 * 149.95525 * 25 24 23 29 29 C 1.47422 * 108.70126 * 358.94142 * 17 16 15 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 34 34 H 0.97000 * 120.00124 * 179.97438 * 8 7 5 35 35 H 1.08999 * 110.72028 * 271.93912 * 15 13 2 36 36 H 1.08999 * 110.72042 * 35.21676 * 15 13 2 37 37 H 1.09003 * 109.88059 * 218.39165 * 16 15 13 38 38 H 1.09005 * 110.01382 * 97.29784 * 16 15 13 39 39 H 1.07994 * 125.37798 * 180.12071 * 22 21 20 40 40 H 1.09002 * 110.36746 * 265.29140 * 29 17 16 41 41 H 1.08996 * 110.45868 * 143.01366 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6620 3.5093 8 7 2.7376 -0.0052 4.6429 9 14 3.0557 -2.4744 3.4254 10 1 4.4886 -2.6165 3.0621 11 1 2.8157 -3.1047 4.7484 12 1 2.2161 -3.1429 2.3990 13 6 2.0400 -0.7213 -1.2492 14 1 1.6547 -1.7400 -1.2944 15 6 1.6775 0.0688 -2.5345 16 6 2.7766 -0.3641 -3.5276 17 7 3.9165 -0.8467 -2.7343 18 6 5.0707 -1.3324 -3.2326 19 8 5.9496 -1.7043 -2.4788 20 6 5.2677 -1.4132 -4.6913 21 7 4.3754 -1.0423 -5.6493 22 6 4.9081 -1.2594 -6.8144 23 8 6.1342 -1.7761 -6.6503 24 6 6.3738 -1.8786 -5.3332 25 6 7.6290 -2.4076 -4.6885 26 9 7.5054 -3.7868 -4.4895 27 9 8.7240 -2.1528 -5.5211 28 9 7.8228 -1.7742 -3.4562 29 6 3.5881 -0.7104 -1.3036 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6318 1.1527 34 1 3.0602 -0.4626 5.4351 35 1 0.6921 -0.2203 -2.8998 36 1 1.7231 1.1425 -2.3528 37 1 3.0823 0.4870 -4.1362 38 1 2.4060 -1.1640 -4.1688 39 1 4.4358 -1.0600 -7.7648 40 1 3.9748 0.2312 -0.9137 41 1 3.9935 -1.5494 -0.7381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724538495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:02 Heat of formation + Delta-G solvation = -125.737805 kcal Electronic energy + Delta-G solvation = -31368.494753 eV Core-core repulsion = 26450.672643 eV Total energy + Delta-G solvation = -4917.822110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.49157 -48.06943 -47.89376 -44.21723 -40.09605 -37.98641 -35.71127 -35.29979 -32.50021 -32.07924 -30.83580 -28.96885 -28.68133 -26.86843 -24.92370 -23.79708 -23.24841 -22.48173 -21.35695 -20.35688 -19.87491 -19.03480 -18.97090 -18.59563 -17.95769 -17.46850 -17.30138 -16.60211 -16.15939 -15.47820 -15.08470 -14.94462 -14.79580 -14.55434 -14.41847 -14.31579 -14.08663 -14.04392 -13.88039 -13.64851 -13.15480 -13.02423 -12.88352 -12.59595 -12.43686 -12.21598 -12.05105 -11.91122 -11.73172 -11.30727 -10.99706 -10.83799 -10.63751 -10.57991 -10.32269 -10.20677 -10.07573 -9.95271 -9.56318 -8.92557 -8.67578 -7.26946 -5.75271 -3.11152 0.08829 1.18737 1.41898 2.48584 2.61791 2.87902 3.20517 3.37660 3.41037 3.44545 3.49850 3.78742 3.89495 4.05387 4.43197 4.61691 4.63908 4.73878 4.75901 4.93724 5.20720 5.30436 5.46193 5.52144 5.59959 5.71244 5.80118 5.83735 6.02262 6.04779 6.13227 6.17678 6.27254 6.38150 6.46467 6.62410 6.76206 6.97793 7.32941 7.86015 7.99885 8.43586 9.21678 9.94488 10.13390 11.43021 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.003128 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.462227 B = 8949.712212 C =10464.803733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.749 5.749 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.934 5.934 9 Si 0.880 3.120 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.081 0.919 15 C -0.125 4.125 16 C 0.110 3.890 17 N -0.595 5.595 18 C 0.593 3.407 19 O -0.509 6.509 20 C 0.030 3.970 21 N -0.460 5.460 22 C 0.218 3.782 23 O -0.171 6.171 24 C -0.087 4.087 25 C 0.564 3.436 26 F -0.159 7.159 27 F -0.169 7.169 28 F -0.122 7.122 29 C 0.117 3.883 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.269 0.731 40 H 0.082 0.918 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 -2.461 -29.066 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.392 5.392 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.581 5.581 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.099 0.901 15 C -0.164 4.164 16 C -0.013 4.013 17 N -0.327 5.327 18 C 0.378 3.622 19 O -0.385 6.385 20 C -0.093 4.093 21 N -0.189 5.189 22 C -0.010 4.010 23 O -0.057 6.057 24 C -0.145 4.145 25 C 0.508 3.492 26 F -0.141 7.141 27 F -0.150 7.150 28 F -0.103 7.103 29 C -0.004 4.004 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.285 0.715 40 H 0.100 0.900 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.306 -2.274 -28.377 28.659 hybrid contribution 0.914 -1.632 -0.267 1.889 sum 4.219 -3.906 -28.643 29.215 Atomic orbital electron populations 1.22404 0.98513 1.00924 1.00563 1.20134 0.92140 0.95457 0.84239 0.92309 1.42802 1.79843 1.09390 1.07169 1.19033 1.37081 0.95474 0.85665 0.89175 1.24646 1.01325 0.97377 0.95561 1.69697 1.52593 1.35571 1.00284 0.86614 0.78705 0.86837 0.76766 1.20874 1.21800 1.20383 1.22739 0.93741 1.00506 0.95684 0.90063 1.22728 0.97985 1.01114 0.94530 1.22149 0.85729 0.99589 0.93814 1.48316 1.14627 1.60360 1.09374 1.16307 0.82377 0.79495 0.84026 1.90988 1.40989 1.48650 1.57838 1.21841 0.90108 1.01213 0.96134 1.71107 1.29691 1.19789 0.98277 1.28579 0.79025 0.93137 1.00227 1.84382 1.35095 1.62610 1.23618 1.23171 0.98788 1.09922 0.82635 1.16490 0.79381 0.76070 0.77245 1.93288 1.95685 1.30024 1.95056 1.93257 1.56080 1.93845 1.71824 1.93481 1.94547 1.81340 1.40887 1.22406 0.95475 1.03576 0.78907 0.94020 0.92254 0.93626 0.80674 0.93071 0.89855 0.90121 0.90894 0.90833 0.71523 0.89994 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.34 37.16 0.35 -2.27 16 2 C 0.19 3.33 2.41 -67.93 -0.16 3.17 16 3 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 4 N -0.75 -16.95 4.62 -53.43 -0.25 -17.20 16 5 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 6 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 9 Si 0.88 22.35 27.74 -169.99 -4.71 17.63 16 10 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 13 C -0.11 -1.52 2.62 -88.47 -0.23 -1.75 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.13 -1.33 5.59 -24.89 -0.14 -1.47 16 16 C 0.11 1.19 5.53 -3.06 -0.02 1.17 16 17 N -0.59 -8.40 3.33 -171.78 -0.57 -8.97 16 18 C 0.59 9.01 7.79 -12.52 -0.10 8.92 16 19 O -0.51 -9.26 13.41 5.27 0.07 -9.19 16 20 C 0.03 0.36 6.79 -83.02 -0.56 -0.21 16 21 N -0.46 -4.19 8.83 -11.48 -0.10 -4.29 16 22 C 0.22 1.17 13.19 51.96 0.69 1.85 16 23 O -0.17 -1.38 10.72 6.49 0.07 -1.31 16 24 C -0.09 -0.97 6.75 -35.08 -0.24 -1.21 16 25 C 0.56 6.77 3.34 36.01 0.12 6.89 16 26 F -0.16 -1.97 17.30 2.25 0.04 -1.93 16 27 F -0.17 -1.82 17.30 2.25 0.04 -1.79 16 28 F -0.12 -1.77 13.49 2.25 0.03 -1.74 16 29 C 0.12 1.87 6.08 -2.53 -0.02 1.85 16 30 H 0.04 0.53 7.50 -51.93 -0.39 0.14 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.36 8.19 5.66 -40.82 -0.23 7.96 16 34 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 36 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 37 H 0.07 0.73 7.76 -51.93 -0.40 0.33 16 38 H 0.07 0.74 7.62 -51.93 -0.40 0.35 16 39 H 0.27 -0.23 8.06 -52.49 -0.42 -0.65 16 40 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 41 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -34.40 354.44 -4.63 -39.03 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -4.79 Total: 2.72 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -0.56 Total: 10.21 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.14 Total: -58.98 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.14 Total: -10.50 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.46 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.40 -4.63 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724538495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.713 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds