Wall clock time and date at job start Wed Apr 1 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.36929 * 119.99904 * 275.00051 * 4 2 1 6 6 H 1.08004 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99984 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99951 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00021 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47254 * 89.99741 * 9 7 5 11 11 H 1.48501 * 109.47458 * 209.99436 * 9 7 5 12 12 H 1.48498 * 109.47288 * 329.99773 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 H 1.09004 * 110.89124 * 302.43330 * 13 2 1 15 15 C 1.55163 * 111.00073 * 66.34952 * 13 2 1 16 16 C 1.54324 * 102.93913 * 153.57866 * 15 13 2 17 17 N 1.47025 * 107.27463 * 337.80737 * 16 15 13 18 18 C 1.34772 * 125.64903 * 178.97569 * 17 16 15 19 19 O 1.21612 * 120.00289 * 179.97438 * 18 17 16 20 20 C 1.47425 * 120.00063 * 359.96253 * 18 17 16 21 21 N 1.36066 * 126.44809 * 359.68045 * 20 18 17 22 22 C 1.29934 * 108.47613 * 179.86301 * 21 20 18 23 23 O 1.34055 * 109.24396 * 0.41065 * 22 21 20 24 24 C 1.34260 * 108.22514 * 359.74661 * 23 22 21 25 25 C 1.50699 * 126.52400 * 180.02562 * 24 23 22 26 26 F 1.39899 * 109.46889 * 269.94948 * 25 24 23 27 27 F 1.39900 * 109.47321 * 29.95286 * 25 24 23 28 28 F 1.39902 * 109.47323 * 149.95525 * 25 24 23 29 29 C 1.47422 * 108.70126 * 358.94142 * 17 16 15 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 34 34 H 0.97000 * 120.00124 * 179.97438 * 8 7 5 35 35 H 1.08999 * 110.72028 * 271.93912 * 15 13 2 36 36 H 1.08999 * 110.72042 * 35.21676 * 15 13 2 37 37 H 1.09003 * 109.88059 * 218.39165 * 16 15 13 38 38 H 1.09005 * 110.01382 * 97.29784 * 16 15 13 39 39 H 1.07994 * 125.37798 * 180.12071 * 22 21 20 40 40 H 1.09002 * 110.36746 * 265.29140 * 29 17 16 41 41 H 1.08996 * 110.45868 * 143.01366 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6620 3.5093 8 7 2.7376 -0.0052 4.6429 9 14 3.0557 -2.4744 3.4254 10 1 4.4886 -2.6165 3.0621 11 1 2.8157 -3.1047 4.7484 12 1 2.2161 -3.1429 2.3990 13 6 2.0400 -0.7213 -1.2492 14 1 1.6547 -1.7400 -1.2944 15 6 1.6775 0.0688 -2.5345 16 6 2.7766 -0.3641 -3.5276 17 7 3.9165 -0.8467 -2.7343 18 6 5.0707 -1.3324 -3.2326 19 8 5.9496 -1.7043 -2.4788 20 6 5.2677 -1.4132 -4.6913 21 7 4.3754 -1.0423 -5.6493 22 6 4.9081 -1.2594 -6.8144 23 8 6.1342 -1.7761 -6.6503 24 6 6.3738 -1.8786 -5.3332 25 6 7.6290 -2.4076 -4.6885 26 9 7.5054 -3.7868 -4.4895 27 9 8.7240 -2.1528 -5.5211 28 9 7.8228 -1.7742 -3.4562 29 6 3.5881 -0.7104 -1.3036 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6318 1.1527 34 1 3.0602 -0.4626 5.4351 35 1 0.6921 -0.2203 -2.8998 36 1 1.7231 1.1425 -2.3528 37 1 3.0823 0.4870 -4.1362 38 1 2.4060 -1.1640 -4.1688 39 1 4.4358 -1.0600 -7.7648 40 1 3.9748 0.2312 -0.9137 41 1 3.9935 -1.5494 -0.7381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724538495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:01 Heat of formation + Delta-G solvation = -151.533535 kcal Electronic energy + Delta-G solvation = -31369.613339 eV Core-core repulsion = 26450.672643 eV Total energy + Delta-G solvation = -4918.940697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.43111 -48.98042 -48.89017 -44.87979 -41.21413 -39.21634 -36.99170 -36.28505 -34.31433 -32.87559 -32.39705 -30.36135 -29.92593 -27.76809 -25.92513 -25.50852 -24.12575 -23.33007 -22.70842 -21.35299 -21.22332 -19.96090 -19.88223 -19.61276 -19.49155 -18.67340 -18.07657 -17.48091 -17.26863 -16.62113 -16.46319 -15.97354 -15.89171 -15.77739 -15.47913 -15.34290 -15.28174 -15.06265 -14.99508 -14.87529 -14.56549 -14.28413 -14.02205 -13.95718 -13.89550 -13.59850 -13.25541 -12.99201 -12.79361 -12.77872 -12.40121 -12.15113 -12.11213 -11.88809 -11.70061 -11.68404 -11.45499 -11.36048 -10.98398 -10.83681 -9.79161 -9.29258 -8.01017 -5.32227 -0.71632 0.43395 0.80096 1.35458 1.39877 1.44631 1.54921 1.72585 1.85096 2.41862 2.48209 2.69672 2.93058 2.96548 3.22744 3.31791 3.43156 3.64910 3.70209 3.81040 3.99839 4.10916 4.34756 4.42334 4.51088 4.60960 4.70432 4.80468 4.85963 4.93635 4.99175 5.06660 5.09341 5.21546 5.31115 5.40930 5.63827 5.81144 5.97481 6.23789 6.27037 6.74941 7.10681 7.88412 8.04585 9.20863 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.003128 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.462227 B = 8949.712212 C =10464.803733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.183 3.817 3 H 0.049 0.951 4 N -0.754 5.754 5 C -0.217 4.217 6 H 0.062 0.938 7 C -0.063 4.063 8 N -0.985 5.985 9 Si 0.943 3.057 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.251 1.251 13 C -0.096 4.096 14 H 0.088 0.912 15 C -0.113 4.113 16 C 0.112 3.888 17 N -0.595 5.595 18 C 0.583 3.417 19 O -0.553 6.553 20 C 0.019 3.981 21 N -0.481 5.481 22 C 0.257 3.743 23 O -0.167 6.167 24 C -0.095 4.095 25 C 0.561 3.439 26 F -0.165 7.165 27 F -0.163 7.163 28 F -0.142 7.142 29 C 0.117 3.883 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.362 0.638 34 H 0.255 0.745 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.332 0.668 40 H 0.062 0.938 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.530 -3.037 -33.640 33.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.397 5.397 5 C -0.349 4.349 6 H 0.080 0.920 7 C -0.254 4.254 8 N -0.636 5.636 9 Si 0.772 3.228 10 H -0.215 1.215 11 H -0.223 1.223 12 H -0.176 1.176 13 C -0.116 4.116 14 H 0.106 0.894 15 C -0.151 4.151 16 C -0.009 4.009 17 N -0.326 5.326 18 C 0.369 3.631 19 O -0.431 6.431 20 C -0.102 4.102 21 N -0.208 5.208 22 C 0.031 3.969 23 O -0.053 6.053 24 C -0.154 4.154 25 C 0.506 3.494 26 F -0.146 7.146 27 F -0.144 7.144 28 F -0.123 7.123 29 C -0.005 4.005 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.194 0.806 34 H 0.064 0.936 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.346 0.654 40 H 0.080 0.920 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.468 -2.838 -33.037 33.191 hybrid contribution 1.446 -1.330 0.985 2.198 sum 2.915 -4.167 -32.052 32.453 Atomic orbital electron populations 1.22255 0.96414 1.01451 1.01264 1.20401 0.93450 0.94918 0.83712 0.93315 1.42877 1.80102 1.09454 1.07287 1.19025 1.34190 0.94423 0.87229 0.92047 1.25369 1.02829 1.01751 0.95442 1.69862 1.55193 1.37416 1.01145 0.85576 0.78244 0.81983 0.76997 1.21538 1.22339 1.17578 1.22567 0.92049 1.01138 0.95804 0.89352 1.22770 0.99477 1.00921 0.91939 1.22337 0.84404 1.00510 0.93619 1.48399 1.15357 1.60009 1.08828 1.16806 0.81987 0.78833 0.85438 1.90957 1.42369 1.50426 1.59378 1.21382 0.91389 1.02510 0.94959 1.71081 1.29563 1.21435 0.98743 1.30036 0.77150 0.88692 1.01060 1.84429 1.36370 1.62845 1.21691 1.22790 0.98034 1.10721 0.83848 1.16577 0.80264 0.75765 0.76790 1.93268 1.95782 1.30476 1.95105 1.93261 1.55959 1.93774 1.71397 1.93436 1.94783 1.81684 1.42416 1.22210 0.96829 1.01289 0.80163 0.89798 0.95073 0.93143 0.80566 0.93562 0.86628 0.89461 0.89571 0.89286 0.65432 0.91951 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.34 71.98 0.67 -3.88 16 2 C 0.18 6.21 2.41 44.99 0.11 6.32 16 3 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 4 N -0.75 -34.11 4.62 -322.94 -1.49 -35.60 16 5 C -0.22 -12.26 10.41 84.04 0.87 -11.38 16 6 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 7 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 8 N -0.98 -64.15 13.97 21.65 0.30 -63.85 16 9 Si 0.94 47.23 27.74 68.60 1.90 49.13 16 10 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 11 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 12 H -0.25 -11.31 6.52 99.48 0.65 -10.66 16 13 C -0.10 -2.53 2.62 -9.40 -0.02 -2.55 16 14 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 15 C -0.11 -1.95 5.59 31.79 0.18 -1.77 16 16 C 0.11 2.05 5.53 86.73 0.48 2.53 16 17 N -0.59 -16.28 3.33 -815.64 -2.71 -18.99 16 18 C 0.58 17.74 7.79 86.66 0.68 18.42 16 19 O -0.55 -21.02 13.41 -4.07 -0.05 -21.08 16 20 C 0.02 0.44 6.79 40.41 0.27 0.71 16 21 N -0.48 -6.96 8.83 -305.14 -2.70 -9.66 16 22 C 0.26 1.46 13.19 130.52 1.72 3.18 16 23 O -0.17 -2.13 10.72 0.30 0.00 -2.13 16 24 C -0.10 -1.99 6.75 25.19 0.17 -1.82 16 25 C 0.56 13.56 3.34 71.24 0.24 13.80 16 26 F -0.17 -4.14 17.30 44.97 0.78 -3.36 16 27 F -0.16 -3.45 17.30 44.97 0.78 -2.68 16 28 F -0.14 -4.35 13.49 44.97 0.61 -3.74 16 29 C 0.12 3.75 6.08 86.86 0.53 4.28 16 30 H 0.08 1.78 7.50 -2.39 -0.02 1.76 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.36 16.19 5.66 -92.71 -0.52 15.67 16 34 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 35 H 0.12 1.35 8.13 -2.39 -0.02 1.33 16 36 H 0.09 1.45 8.01 -2.39 -0.02 1.43 16 37 H 0.09 1.40 7.76 -2.39 -0.02 1.38 16 38 H 0.09 1.41 7.62 -2.38 -0.02 1.39 16 39 H 0.33 -3.00 8.06 -2.91 -0.02 -3.02 16 40 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 41 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 Total: -1.00 -81.00 354.44 4.29 -76.71 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.51 Total: 10.67 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 6.36 Total: 24.56 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -6.60 Total: -128.09 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.20 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 2.16 Total: -9.78 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.90 Total: 49.13 kcal Total: -81.00 4.29 -76.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724538495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.822 kcal (2) G-P(sol) polarization free energy of solvation -81.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds