Wall clock time and date at job start Wed Apr 1 2020 06:17:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09005 * 109.99922 * 2 1
4 4 C 1.54375 * 109.84441 * 121.08993 * 2 1 3
5 5 C 1.55159 * 102.91602 * 97.27254 * 4 2 1
6 6 H 1.09001 * 111.00244 * 277.35586 * 5 4 2
7 7 N 1.46901 * 111.00168 * 153.54753 * 5 4 2
8 8 C 1.46902 * 110.99844 * 158.17657 * 7 5 4
9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5
10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7
11 11 N 1.34777 * 119.99928 * 179.72353 * 9 8 7
12 12 C 1.37101 * 120.00327 * 180.27606 * 11 9 8
13 13 H 1.08001 * 119.99426 * 0.02562 * 12 11 9
14 14 C 1.38942 * 120.00412 * 180.02562 * 12 11 9
15 15 N 1.31411 * 120.00042 * 180.02562 * 14 12 11
16 16 Si 1.86800 * 120.00013 * 0.02562 * 14 12 11
17 17 H 1.48498 * 109.47118 * 89.99593 * 16 14 12
18 18 H 1.48494 * 109.47201 * 209.99761 * 16 14 12
19 19 H 1.48498 * 109.47011 * 329.99735 * 16 14 12
20 20 C 1.54902 * 101.62014 * 35.45494 * 5 4 2
21 21 N 1.47018 * 109.88502 * 238.90055 * 2 1 3
22 22 C 1.34777 * 125.65091 * 59.56046 * 21 2 1
23 23 O 1.21281 * 119.99724 * 359.97438 * 22 21 2
24 24 C 1.50698 * 120.00359 * 179.97438 * 22 21 2
25 25 S 1.81394 * 109.47224 * 179.97438 * 24 22 21
26 26 C 1.81402 * 101.92244 * 180.02562 * 25 24 22
27 27 O 1.42108 * 108.58006 * 294.48823 * 25 24 22
28 28 O 1.42104 * 108.57825 * 65.51119 * 25 24 22
29 29 H 1.09004 * 109.47215 * 179.64142 * 1 2 3
30 30 H 1.08994 * 109.47678 * 299.64518 * 1 2 3
31 31 H 1.09002 * 109.46985 * 59.64659 * 1 2 3
32 32 H 1.08999 * 110.76033 * 338.90645 * 4 2 1
33 33 H 1.09002 * 110.70767 * 215.61282 * 4 2 1
34 34 H 1.00895 * 111.00207 * 282.13000 * 7 5 4
35 35 H 1.09004 * 109.47131 * 60.00016 * 8 7 5
36 36 H 1.09000 * 109.47732 * 300.00127 * 8 7 5
37 37 H 0.97000 * 120.00317 * 0.28382 * 11 9 8
38 38 H 0.97005 * 120.00014 * 180.02562 * 15 14 12
39 39 H 1.08996 * 110.37063 * 81.84522 * 20 5 4
40 40 H 1.09005 * 110.36819 * 204.17237 * 20 5 4
41 41 H 1.09003 * 109.46696 * 300.00078 * 24 22 21
42 42 H 1.09000 * 109.47048 * 59.99711 * 24 22 21
43 43 H 1.08995 * 109.46876 * 60.00136 * 26 25 24
44 44 H 1.09003 * 109.47152 * 180.02562 * 26 25 24
45 45 H 1.08997 * 109.46489 * 299.99779 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9028 1.0243 0.0000
4 6 2.0540 -0.7498 1.2435
5 6 2.3518 -2.1694 0.6925
6 1 1.4455 -2.7741 0.6606
7 7 3.3965 -2.8329 1.4841
8 6 3.3282 -4.2920 1.3281
9 6 4.4129 -4.9366 2.1521
10 8 5.1681 -4.2483 2.8056
11 7 4.5398 -6.2783 2.1679
12 6 5.5230 -6.8651 2.9220
13 1 6.1955 -6.2521 3.5038
14 6 5.6542 -8.2482 2.9379
15 7 6.5963 -8.8106 3.6612
16 14 4.4915 -9.3083 1.9311
17 1 5.0612 -9.5183 0.5759
18 1 4.3125 -10.6211 2.6017
19 1 3.1765 -8.6282 1.8153
20 6 2.8568 -1.8498 -0.7365
21 7 2.0300 -0.7141 -1.1838
22 6 1.7754 -0.3846 -2.4657
23 8 1.0786 0.5753 -2.7181
24 6 2.3566 -1.2090 -3.5853
25 16 1.8353 -0.5173 -5.1791
26 6 2.6334 -1.6440 -6.3556
27 8 0.4268 -0.6636 -5.2972
28 8 2.4134 0.7728 -5.3235
29 1 -0.3634 -1.0277 -0.0064
30 1 -0.3634 0.5083 0.8931
31 1 -0.3633 0.5193 -0.8868
32 1 1.2907 -0.7901 2.0206
33 1 2.9645 -0.2833 1.6196
34 1 4.3114 -2.4855 1.2388
35 1 3.4667 -4.5521 0.2786
36 1 2.3549 -4.6484 1.6653
37 1 3.9357 -6.8288 1.6456
38 1 6.6882 -9.7762 3.6719
39 1 3.9091 -1.5667 -0.7126
40 1 2.7088 -2.7081 -1.3920
41 1 3.4446 -1.1939 -3.5206
42 1 2.0020 -2.2363 -3.5020
43 1 2.2705 -2.6584 -6.1905
44 1 2.3963 -1.3341 -7.3734
45 1 3.7132 -1.6160 -6.2099
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725586707.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:17:24
Heat of formation + Delta-G solvation = -119.334043 kcal
Electronic energy + Delta-G solvation = -28512.896936 eV
Core-core repulsion = 24272.653206 eV
Total energy + Delta-G solvation = -4240.243730 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 2.51 seconds
Orbital eigenvalues (eV)
-40.78705 -38.80916 -38.08314 -37.35475 -36.35318 -35.08262 -33.96693 -32.90490
-31.77162 -30.60040 -30.17599 -29.66694 -26.61109 -26.13504 -24.03336 -22.87570
-21.20792 -19.71854 -19.50178 -19.16807 -18.50922 -17.92559 -17.11443 -16.89766
-16.57362 -16.20929 -16.05301 -15.72588 -15.18008 -15.04850 -14.90799 -14.18908
-13.95083 -13.79084 -13.75005 -13.68994 -13.62088 -13.33036 -13.13749 -13.10972
-12.68837 -12.53612 -12.41196 -12.34503 -12.30735 -12.21093 -11.95260 -11.72130
-11.54151 -11.27354 -11.26899 -11.21015 -10.91978 -10.68328 -10.50299 -10.06410
-9.67299 -9.17445 -8.74615 -8.37978 -8.27502 -6.39855 -3.91945 -0.58727
2.00702 2.24990 2.33115 2.94195 2.97868 3.07809 3.23699 3.51918
3.60900 3.70897 3.94950 4.01635 4.12305 4.17957 4.26391 4.35002
4.53344 4.56996 4.68827 4.73272 4.75184 4.92710 5.02387 5.11081
5.11241 5.19390 5.30865 5.38432 5.44369 5.63109 5.64360 5.70401
5.78979 5.83798 5.92995 6.09978 6.84824 6.94335 7.31612 7.47983
7.50559 8.04539 8.49335 8.85427 9.32351 9.71087 10.73069
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.013160 B = 0.002308 C = 0.002066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2127.122462 B =12126.816098 C =13549.758158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.132 3.868
3 H 0.082 0.918
4 C -0.117 4.117
5 C 0.079 3.921
6 H 0.096 0.904
7 N -0.651 5.651
8 C 0.046 3.954
9 C 0.447 3.553
10 O -0.564 6.564
11 N -0.588 5.588
12 C -0.307 4.307
13 H 0.120 0.880
14 C 0.042 3.958
15 N -0.879 5.879
16 Si 0.880 3.120
17 H -0.271 1.271
18 H -0.276 1.276
19 H -0.269 1.269
20 C 0.061 3.939
21 N -0.600 5.600
22 C 0.558 3.442
23 O -0.527 6.527
24 C -0.660 4.660
25 S 2.456 3.544
26 C -0.662 4.662
27 O -0.921 6.921
28 O -0.921 6.921
29 H 0.058 0.942
30 H 0.069 0.931
31 H 0.072 0.928
32 H 0.092 0.908
33 H 0.086 0.914
34 H 0.355 0.645
35 H 0.046 0.954
36 H 0.090 0.910
37 H 0.370 0.630
38 H 0.274 0.726
39 H 0.078 0.922
40 H 0.078 0.922
41 H 0.160 0.840
42 H 0.159 0.841
43 H 0.130 0.870
44 H 0.134 0.866
45 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.812 11.966 -17.739 23.974
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.029 3.971
3 H 0.100 0.900
4 C -0.155 4.155
5 C -0.033 4.033
6 H 0.115 0.885
7 N -0.283 5.283
8 C -0.087 4.087
9 C 0.233 3.767
10 O -0.446 6.446
11 N -0.228 5.228
12 C -0.436 4.436
13 H 0.138 0.862
14 C -0.161 4.161
15 N -0.519 5.519
16 Si 0.707 3.293
17 H -0.197 1.197
18 H -0.201 1.201
19 H -0.195 1.195
20 C -0.064 4.064
21 N -0.334 5.334
22 C 0.345 3.655
23 O -0.405 6.405
24 C -0.786 4.786
25 S 2.632 3.368
26 C -0.811 4.811
27 O -0.918 6.918
28 O -0.918 6.918
29 H 0.077 0.923
30 H 0.088 0.912
31 H 0.091 0.909
32 H 0.110 0.890
33 H 0.104 0.896
34 H 0.176 0.824
35 H 0.064 0.936
36 H 0.108 0.892
37 H 0.203 0.797
38 H 0.085 0.915
39 H 0.097 0.903
40 H 0.097 0.903
41 H 0.178 0.822
42 H 0.177 0.823
43 H 0.149 0.851
44 H 0.152 0.848
45 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -11.432 13.470 -16.957 24.488
hybrid contribution 0.261 -2.234 -1.470 2.687
sum -11.171 11.236 -18.427 24.302
Atomic orbital electron populations
1.22180 0.94221 1.02610 1.03380 1.21754 0.95149 0.96576 0.83578
0.90012 1.22772 1.02796 0.94084 0.95865 1.22818 0.96257 0.95900
0.88361 0.88541 1.60108 1.07875 1.03587 1.56697 1.21797 1.00205
0.88525 0.98181 1.19643 0.87627 0.82672 0.86779 1.90581 1.46148
1.62093 1.45805 1.42206 1.31215 1.05562 1.43779 1.19428 1.09153
0.91175 1.23804 0.86240 1.25051 0.97110 0.96553 0.97417 1.69620
1.31745 1.11364 1.39129 0.86667 0.80759 0.81146 0.80759 1.19666
1.20105 1.19481 1.23404 0.95707 0.88878 0.98424 1.48304 1.50047
1.30384 1.04643 1.18701 0.80556 0.84114 0.82171 1.90859 1.38532
1.28291 1.82789 1.30924 1.13834 1.13606 1.20278 1.07177 0.76155
0.76552 0.76940 1.30386 1.14840 1.17833 1.18064 1.93603 1.27092
1.86525 1.84621 1.93604 1.79646 1.34185 1.84383 0.92329 0.91204
0.90940 0.88993 0.89553 0.82394 0.93631 0.89188 0.79693 0.91518
0.90336 0.90317 0.82239 0.82303 0.85122 0.84771 0.85105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 41.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.50 9.06 37.16 0.34 -1.17 16
2 C 0.13 1.21 3.50 -66.93 -0.23 0.97 16
3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
4 C -0.12 -1.00 6.19 -24.87 -0.15 -1.15 16
5 C 0.08 0.71 3.34 -65.57 -0.22 0.49 16
6 H 0.10 0.83 7.87 -51.93 -0.41 0.42 16
7 N -0.65 -8.14 6.02 -105.72 -0.64 -8.78 16
8 C 0.05 0.63 6.05 -4.97 -0.03 0.60 16
9 C 0.45 9.25 7.82 -10.98 -0.09 9.16 16
10 O -0.56 -14.15 15.78 5.55 0.09 -14.06 16
11 N -0.59 -13.04 5.09 -10.96 -0.06 -13.09 16
12 C -0.31 -8.29 10.16 -14.93 -0.15 -8.44 16
13 H 0.12 3.72 7.39 -52.49 -0.39 3.34 16
14 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16
15 N -0.88 -24.85 13.96 55.50 0.77 -24.08 16
16 Si 0.88 18.36 27.74 -169.99 -4.71 13.65 16
17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16
18 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16
19 H -0.27 -5.06 6.52 56.52 0.37 -4.69 16
20 C 0.06 0.47 6.30 -2.53 -0.02 0.45 16
21 N -0.60 -5.57 3.08 -162.99 -0.50 -6.08 16
22 C 0.56 5.91 7.65 -10.99 -0.08 5.83 16
23 O -0.53 -7.60 14.52 2.55 0.04 -7.56 16
24 C -0.66 -3.77 5.30 36.00 0.19 -3.58 16
25 S 2.46 18.40 4.60 -107.50 -0.49 17.90 16
26 C -0.66 -1.77 10.62 101.05 1.07 -0.69 16
27 O -0.92 -10.75 17.95 -59.52 -1.07 -11.82 16
28 O -0.92 -10.84 17.95 -59.54 -1.07 -11.91 16
29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.07 0.81 6.74 -51.93 -0.35 0.46 16
32 H 0.09 0.74 7.83 -51.93 -0.41 0.34 16
33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16
34 H 0.35 4.58 7.94 -39.29 -0.31 4.27 16
35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
36 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16
37 H 0.37 7.10 5.76 -40.82 -0.24 6.86 16
38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16
39 H 0.08 0.57 7.77 -51.93 -0.40 0.17 16
40 H 0.08 0.46 7.48 -51.93 -0.39 0.07 16
41 H 0.16 0.40 8.14 -51.92 -0.42 -0.02 16
42 H 0.16 0.38 7.85 -51.92 -0.41 -0.03 16
43 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16
44 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16
45 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16
LS Contribution 385.20 15.07 5.80 5.80
Total: -1.00 -40.20 385.20 -8.00 -48.20
By element:
Atomic # 1 Polarization: 15.05 SS G_CDS: -6.69 Total: 8.35 kcal
Atomic # 6 Polarization: 2.95 SS G_CDS: 0.53 Total: 3.48 kcal
Atomic # 7 Polarization: -51.61 SS G_CDS: -0.42 Total: -52.03 kcal
Atomic # 8 Polarization: -43.35 SS G_CDS: -2.01 Total: -45.36 kcal
Atomic # 14 Polarization: 18.36 SS G_CDS: -4.71 Total: 13.65 kcal
Atomic # 16 Polarization: 18.40 SS G_CDS: -0.49 Total: 17.90 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -40.20 -8.00 -48.20 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725586707.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.135 kcal
(2) G-P(sol) polarization free energy of solvation -40.200 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.199 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.334 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.51 seconds