Wall clock time and date at job start Wed Apr 1 2020 06:17:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09005 * 109.99922 * 2 1
4 4 C 1.54375 * 109.84441 * 121.08993 * 2 1 3
5 5 C 1.55159 * 102.91602 * 97.27254 * 4 2 1
6 6 H 1.09001 * 111.00244 * 277.35586 * 5 4 2
7 7 N 1.46901 * 111.00168 * 153.54753 * 5 4 2
8 8 C 1.46902 * 110.99844 * 158.17657 * 7 5 4
9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5
10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7
11 11 N 1.34777 * 119.99928 * 179.72353 * 9 8 7
12 12 C 1.37101 * 120.00327 * 180.27606 * 11 9 8
13 13 H 1.08001 * 119.99426 * 0.02562 * 12 11 9
14 14 C 1.38942 * 120.00412 * 180.02562 * 12 11 9
15 15 N 1.31411 * 120.00042 * 180.02562 * 14 12 11
16 16 Si 1.86800 * 120.00013 * 0.02562 * 14 12 11
17 17 H 1.48498 * 109.47118 * 89.99593 * 16 14 12
18 18 H 1.48494 * 109.47201 * 209.99761 * 16 14 12
19 19 H 1.48498 * 109.47011 * 329.99735 * 16 14 12
20 20 C 1.54902 * 101.62014 * 35.45494 * 5 4 2
21 21 N 1.47018 * 109.88502 * 238.90055 * 2 1 3
22 22 C 1.34777 * 125.65091 * 59.56046 * 21 2 1
23 23 O 1.21281 * 119.99724 * 359.97438 * 22 21 2
24 24 C 1.50698 * 120.00359 * 179.97438 * 22 21 2
25 25 S 1.81394 * 109.47224 * 179.97438 * 24 22 21
26 26 C 1.81402 * 101.92244 * 180.02562 * 25 24 22
27 27 O 1.42108 * 108.58006 * 294.48823 * 25 24 22
28 28 O 1.42104 * 108.57825 * 65.51119 * 25 24 22
29 29 H 1.09004 * 109.47215 * 179.64142 * 1 2 3
30 30 H 1.08994 * 109.47678 * 299.64518 * 1 2 3
31 31 H 1.09002 * 109.46985 * 59.64659 * 1 2 3
32 32 H 1.08999 * 110.76033 * 338.90645 * 4 2 1
33 33 H 1.09002 * 110.70767 * 215.61282 * 4 2 1
34 34 H 1.00895 * 111.00207 * 282.13000 * 7 5 4
35 35 H 1.09004 * 109.47131 * 60.00016 * 8 7 5
36 36 H 1.09000 * 109.47732 * 300.00127 * 8 7 5
37 37 H 0.97000 * 120.00317 * 0.28382 * 11 9 8
38 38 H 0.97005 * 120.00014 * 180.02562 * 15 14 12
39 39 H 1.08996 * 110.37063 * 81.84522 * 20 5 4
40 40 H 1.09005 * 110.36819 * 204.17237 * 20 5 4
41 41 H 1.09003 * 109.46696 * 300.00078 * 24 22 21
42 42 H 1.09000 * 109.47048 * 59.99711 * 24 22 21
43 43 H 1.08995 * 109.46876 * 60.00136 * 26 25 24
44 44 H 1.09003 * 109.47152 * 180.02562 * 26 25 24
45 45 H 1.08997 * 109.46489 * 299.99779 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9028 1.0243 0.0000
4 6 2.0540 -0.7498 1.2435
5 6 2.3518 -2.1694 0.6925
6 1 1.4455 -2.7741 0.6606
7 7 3.3965 -2.8329 1.4841
8 6 3.3282 -4.2920 1.3281
9 6 4.4129 -4.9366 2.1521
10 8 5.1681 -4.2483 2.8056
11 7 4.5398 -6.2783 2.1679
12 6 5.5230 -6.8651 2.9220
13 1 6.1955 -6.2521 3.5038
14 6 5.6542 -8.2482 2.9379
15 7 6.5963 -8.8106 3.6612
16 14 4.4915 -9.3083 1.9311
17 1 5.0612 -9.5183 0.5759
18 1 4.3125 -10.6211 2.6017
19 1 3.1765 -8.6282 1.8153
20 6 2.8568 -1.8498 -0.7365
21 7 2.0300 -0.7141 -1.1838
22 6 1.7754 -0.3846 -2.4657
23 8 1.0786 0.5753 -2.7181
24 6 2.3566 -1.2090 -3.5853
25 16 1.8353 -0.5173 -5.1791
26 6 2.6334 -1.6440 -6.3556
27 8 0.4268 -0.6636 -5.2972
28 8 2.4134 0.7728 -5.3235
29 1 -0.3634 -1.0277 -0.0064
30 1 -0.3634 0.5083 0.8931
31 1 -0.3633 0.5193 -0.8868
32 1 1.2907 -0.7901 2.0206
33 1 2.9645 -0.2833 1.6196
34 1 4.3114 -2.4855 1.2388
35 1 3.4667 -4.5521 0.2786
36 1 2.3549 -4.6484 1.6653
37 1 3.9357 -6.8288 1.6456
38 1 6.6882 -9.7762 3.6719
39 1 3.9091 -1.5667 -0.7126
40 1 2.7088 -2.7081 -1.3920
41 1 3.4446 -1.1939 -3.5206
42 1 2.0020 -2.2363 -3.5020
43 1 2.2705 -2.6584 -6.1905
44 1 2.3963 -1.3341 -7.3734
45 1 3.7132 -1.6160 -6.2099
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725586707.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:17:23
Heat of formation + Delta-G solvation = -156.252801 kcal
Electronic energy + Delta-G solvation = -28514.497854 eV
Core-core repulsion = 24272.653206 eV
Total energy + Delta-G solvation = -4241.844648 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.139 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.52216 -40.26802 -39.08782 -38.01592 -37.00823 -36.27267 -35.62932 -33.71748
-33.58449 -31.13877 -30.98816 -30.01850 -27.99618 -26.82474 -25.54287 -23.66738
-21.90668 -21.25327 -20.41885 -20.24345 -19.73542 -18.60534 -17.88379 -17.68078
-17.40132 -17.13593 -16.91090 -16.70080 -16.51149 -16.08361 -15.80050 -15.49836
-15.00122 -14.75702 -14.55807 -14.33800 -14.23003 -14.05040 -13.97833 -13.91048
-13.82071 -13.65324 -13.40221 -13.12649 -13.08088 -13.03827 -13.02853 -12.83633
-12.40828 -12.37853 -12.10860 -12.02847 -11.94028 -11.68774 -11.62053 -11.47099
-11.28023 -10.39797 -10.21582 -9.89674 -9.32180 -8.38028 -5.99151 -1.05934
1.30065 1.33383 1.38895 1.48334 1.68010 1.81982 2.00843 2.26524
2.63913 2.83127 3.07885 3.19086 3.23046 3.38748 3.61221 3.69891
3.89251 4.01439 4.07602 4.11749 4.20667 4.24206 4.27748 4.29958
4.38222 4.44967 4.57893 4.63490 4.68846 4.76930 4.93763 4.99276
5.03184 5.09566 5.24203 5.36031 5.55968 5.93525 6.06009 6.24027
6.38268 6.63033 6.79140 6.92362 7.44208 8.01413 8.79655
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.013160 B = 0.002308 C = 0.002066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2127.122462 B =12126.816098 C =13549.758158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.129 3.871
3 H 0.069 0.931
4 C -0.111 4.111
5 C 0.083 3.917
6 H 0.112 0.888
7 N -0.669 5.669
8 C 0.060 3.940
9 C 0.448 3.552
10 O -0.616 6.616
11 N -0.591 5.591
12 C -0.327 4.327
13 H 0.054 0.946
14 C -0.018 4.018
15 N -0.937 5.937
16 Si 0.966 3.034
17 H -0.255 1.255
18 H -0.281 1.281
19 H -0.227 1.227
20 C 0.060 3.940
21 N -0.599 5.599
22 C 0.541 3.459
23 O -0.579 6.579
24 C -0.647 4.647
25 S 2.437 3.563
26 C -0.629 4.629
27 O -0.981 6.981
28 O -0.984 6.984
29 H 0.065 0.935
30 H 0.081 0.919
31 H 0.044 0.956
32 H 0.097 0.903
33 H 0.079 0.921
34 H 0.351 0.649
35 H 0.090 0.910
36 H 0.116 0.884
37 H 0.391 0.609
38 H 0.278 0.722
39 H 0.085 0.915
40 H 0.112 0.888
41 H 0.198 0.802
42 H 0.203 0.797
43 H 0.163 0.837
44 H 0.141 0.859
45 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.235 9.408 -20.412 25.590
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.026 3.974
3 H 0.087 0.913
4 C -0.149 4.149
5 C -0.028 4.028
6 H 0.130 0.870
7 N -0.301 5.301
8 C -0.072 4.072
9 C 0.236 3.764
10 O -0.501 6.501
11 N -0.233 5.233
12 C -0.457 4.457
13 H 0.072 0.928
14 C -0.216 4.216
15 N -0.578 5.578
16 Si 0.786 3.214
17 H -0.179 1.179
18 H -0.207 1.207
19 H -0.150 1.150
20 C -0.064 4.064
21 N -0.331 5.331
22 C 0.329 3.671
23 O -0.461 6.461
24 C -0.776 4.776
25 S 2.622 3.378
26 C -0.782 4.782
27 O -0.978 6.978
28 O -0.981 6.981
29 H 0.084 0.916
30 H 0.100 0.900
31 H 0.064 0.936
32 H 0.115 0.885
33 H 0.097 0.903
34 H 0.171 0.829
35 H 0.108 0.892
36 H 0.134 0.866
37 H 0.226 0.774
38 H 0.087 0.913
39 H 0.103 0.897
40 H 0.130 0.870
41 H 0.215 0.785
42 H 0.220 0.780
43 H 0.181 0.819
44 H 0.159 0.841
45 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -12.898 10.967 -19.628 25.921
hybrid contribution 0.831 -1.350 -0.541 1.675
sum -12.067 9.617 -20.170 25.395
Atomic orbital electron populations
1.22119 0.94249 1.02788 1.02666 1.21739 0.95139 0.96334 0.84214
0.91312 1.22702 1.02592 0.94064 0.95546 1.22811 0.95654 0.95556
0.88786 0.87050 1.60050 1.08495 1.03131 1.58462 1.21736 0.97849
0.88649 0.98932 1.21070 0.87825 0.81939 0.85597 1.90567 1.48452
1.63244 1.47805 1.42028 1.30816 1.06479 1.43961 1.18988 1.10301
0.91417 1.24950 0.92827 1.26153 0.99144 0.97749 0.98572 1.69816
1.34451 1.12029 1.41504 0.85351 0.79423 0.77980 0.78647 1.17893
1.20657 1.15045 1.23526 0.95589 0.89280 0.97981 1.48384 1.49773
1.30633 1.04327 1.19546 0.80083 0.84070 0.83384 1.90847 1.40860
1.30726 1.83621 1.30839 1.15937 1.14471 1.16309 1.07171 0.75313
0.76928 0.78427 1.30112 1.15803 1.16883 1.15436 1.93530 1.30978
1.87507 1.85782 1.93529 1.80041 1.38923 1.85586 0.91578 0.89972
0.93643 0.88467 0.90260 0.82898 0.89176 0.86649 0.77357 0.91258
0.89720 0.86962 0.78455 0.78019 0.81923 0.84091 0.82136
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.81 9.06 71.98 0.65 -2.16 16
2 C 0.13 2.23 3.50 45.36 0.16 2.39 16
3 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16
4 C -0.11 -1.67 6.19 31.80 0.20 -1.47 16
5 C 0.08 1.17 3.34 46.31 0.15 1.32 16
6 H 0.11 1.31 7.87 -2.39 -0.02 1.29 16
7 N -0.67 -14.50 6.02 -488.40 -2.94 -17.43 16
8 C 0.06 1.38 6.05 85.56 0.52 1.90 16
9 C 0.45 17.73 7.82 87.66 0.69 18.42 16
10 O -0.62 -31.35 15.78 -3.07 -0.05 -31.40 16
11 N -0.59 -25.15 5.09 -306.98 -1.56 -26.72 16
12 C -0.33 -18.13 10.16 84.04 0.85 -17.27 16
13 H 0.05 3.59 7.39 -2.91 -0.02 3.57 16
14 C -0.02 -0.94 5.50 84.92 0.47 -0.48 16
15 N -0.94 -54.74 13.96 21.66 0.30 -54.43 16
16 Si 0.97 35.98 27.74 68.60 1.90 37.88 16
17 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16
18 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16
19 H -0.23 -6.86 6.52 99.48 0.65 -6.21 16
20 C 0.06 0.65 6.30 86.85 0.55 1.20 16
21 N -0.60 -9.72 3.08 -787.97 -2.43 -12.14 16
22 C 0.54 10.69 7.65 87.66 0.67 11.36 16
23 O -0.58 -17.39 14.52 -0.16 0.00 -17.39 16
24 C -0.65 -5.06 5.30 71.24 0.38 -4.69 16
25 S 2.44 33.82 4.60 -56.49 -0.26 33.56 16
26 C -0.63 -0.49 10.62 113.37 1.20 0.71 16
27 O -0.98 -23.40 17.95 -125.76 -2.26 -25.66 16
28 O -0.98 -24.06 17.95 -125.74 -2.26 -26.32 16
29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16
30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
31 H 0.04 1.06 6.74 -2.39 -0.02 1.04 16
32 H 0.10 1.37 7.83 -2.39 -0.02 1.35 16
33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
34 H 0.35 8.18 7.94 -89.70 -0.71 7.46 16
35 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16
36 H 0.12 2.17 8.09 -2.39 -0.02 2.15 16
37 H 0.39 13.29 5.76 -92.71 -0.53 12.75 16
38 H 0.28 14.85 8.31 -92.70 -0.77 14.08 16
39 H 0.08 0.87 7.77 -2.39 -0.02 0.85 16
40 H 0.11 0.51 7.48 -2.38 -0.02 0.49 16
41 H 0.20 -0.02 8.14 -2.39 -0.02 -0.04 16
42 H 0.20 -0.25 7.85 -2.39 -0.02 -0.27 16
43 H 0.16 -0.78 8.14 -2.39 -0.02 -0.80 16
44 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16
45 H 0.16 -0.69 8.14 -2.39 -0.02 -0.71 16
Total: -1.00 -100.34 385.20 -3.34 -103.68
By element:
Atomic # 1 Polarization: 25.42 SS G_CDS: -0.28 Total: 25.14 kcal
Atomic # 6 Polarization: 4.74 SS G_CDS: 6.49 Total: 11.22 kcal
Atomic # 7 Polarization: -104.10 SS G_CDS: -6.63 Total: -110.73 kcal
Atomic # 8 Polarization: -96.21 SS G_CDS: -4.56 Total: -100.77 kcal
Atomic # 14 Polarization: 35.98 SS G_CDS: 1.90 Total: 37.88 kcal
Atomic # 16 Polarization: 33.82 SS G_CDS: -0.26 Total: 33.56 kcal
Total: -100.34 -3.34 -103.68 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725586707.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.568 kcal
(2) G-P(sol) polarization free energy of solvation -100.343 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.341 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -156.253 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds