Wall clock time and date at job start Wed Apr 1 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.99686 * 2 1 4 4 C 1.54324 * 109.87945 * 121.09167 * 2 1 3 5 5 C 1.55157 * 102.93850 * 141.61247 * 4 2 1 6 6 H 1.09004 * 111.03812 * 82.59183 * 5 4 2 7 7 N 1.46901 * 111.00117 * 206.42252 * 5 4 2 8 8 C 1.46905 * 110.99870 * 198.64991 * 7 5 4 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 5 10 10 O 1.21297 * 120.00124 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00196 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00290 * 180.02562 * 11 9 8 13 13 H 1.07990 * 119.99768 * 359.97438 * 12 11 9 14 14 C 1.38956 * 119.99812 * 180.02562 * 12 11 9 15 15 N 1.31408 * 119.99864 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99403 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47056 * 90.00522 * 16 14 12 18 18 H 1.48505 * 109.46897 * 209.99554 * 16 14 12 19 19 H 1.48495 * 109.47527 * 330.00091 * 16 14 12 20 20 C 1.54909 * 101.58450 * 324.49925 * 5 4 2 21 21 N 1.47017 * 109.88466 * 238.90371 * 2 1 3 22 22 C 1.34775 * 125.65117 * 61.67762 * 21 2 1 23 23 O 1.21280 * 120.00127 * 359.97438 * 22 21 2 24 24 C 1.50695 * 120.00181 * 179.97438 * 22 21 2 25 25 S 1.81399 * 109.47189 * 179.97438 * 24 22 21 26 26 C 1.81408 * 101.92163 * 179.97438 * 25 24 22 27 27 O 1.42099 * 108.57757 * 294.48446 * 25 24 22 28 28 O 1.42102 * 108.58049 * 65.51495 * 25 24 22 29 29 H 1.09000 * 109.47031 * 179.64296 * 1 2 3 30 30 H 1.08994 * 109.47294 * 299.64865 * 1 2 3 31 31 H 1.09008 * 109.46526 * 59.64304 * 1 2 3 32 32 H 1.08998 * 110.72208 * 23.25090 * 4 2 1 33 33 H 1.09000 * 110.72129 * 259.97615 * 4 2 1 34 34 H 1.00901 * 111.00067 * 322.60166 * 7 5 4 35 35 H 1.09001 * 109.46798 * 300.00327 * 8 7 5 36 36 H 1.08998 * 109.46961 * 60.00043 * 8 7 5 37 37 H 0.97009 * 119.99629 * 359.97438 * 11 9 8 38 38 H 0.97004 * 119.99642 * 179.97438 * 15 14 12 39 39 H 1.08992 * 110.36779 * 155.85360 * 20 5 4 40 40 H 1.09005 * 110.36313 * 278.06312 * 20 5 4 41 41 H 1.09005 * 109.47215 * 300.00010 * 24 22 21 42 42 H 1.09004 * 109.47559 * 59.99597 * 24 22 21 43 43 H 1.08994 * 109.47181 * 60.00205 * 26 25 24 44 44 H 1.09003 * 109.47105 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.46931 * 299.99646 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 3.2876 -1.5142 0.6925 6 1 4.1658 -0.8693 0.6606 7 7 3.5538 -2.7227 1.4840 8 6 4.9266 -3.2001 1.2703 9 6 5.1620 -4.4385 2.0960 10 8 4.2735 -4.8804 2.7936 11 7 6.3598 -5.0553 2.0595 12 6 6.5738 -6.1822 2.8104 13 1 5.7827 -6.5755 3.4314 14 6 7.8090 -6.8177 2.7730 15 7 8.7718 -6.3387 2.0177 16 14 8.1007 -8.3528 3.7966 17 1 7.7373 -9.5538 3.0023 18 1 9.5336 -8.4276 4.1794 19 1 7.2633 -8.2975 5.0217 20 6 2.8146 -1.8794 -0.7367 21 7 2.0301 -0.7140 -1.1839 22 6 1.8087 -0.3613 -2.4656 23 8 1.1453 0.6221 -2.7181 24 6 2.3854 -1.1888 -3.5853 25 16 1.9138 -0.4622 -5.1791 26 6 2.7007 -1.5968 -6.3557 27 8 0.5040 -0.5650 -5.3240 28 8 2.5324 0.8117 -5.2967 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5194 -0.8869 32 1 1.3051 -1.4459 1.6183 33 1 2.3528 -0.0459 2.0201 34 1 3.3761 -2.5598 2.4638 35 1 5.0697 -3.4345 0.2154 36 1 5.6317 -2.4244 1.5690 37 1 7.0703 -4.7021 1.5014 38 1 9.6341 -6.7821 1.9920 39 1 3.6717 -2.0339 -1.3920 40 1 2.1903 -2.7726 -0.7129 41 1 3.4720 -1.2070 -3.5011 42 1 1.9990 -2.2061 -3.5216 43 1 2.3057 -2.6022 -6.2105 44 1 2.4908 -1.2678 -7.3735 45 1 3.7781 -1.6021 -6.1901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725586709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:31 Heat of formation + Delta-G solvation = -127.099477 kcal Electronic energy + Delta-G solvation = -28408.100737 eV Core-core repulsion = 24167.520273 eV Total energy + Delta-G solvation = -4240.580465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.65493 -38.62652 -37.92237 -37.27369 -36.27277 -34.99112 -33.89921 -32.79688 -31.33991 -30.52568 -30.14014 -29.57579 -26.45414 -26.15316 -24.19350 -22.55928 -21.04959 -19.71707 -19.27370 -19.03034 -18.01243 -17.83133 -17.21328 -16.76832 -16.46526 -16.37048 -15.89415 -15.42071 -15.25624 -14.83453 -14.59604 -14.33577 -13.92495 -13.77432 -13.68886 -13.64252 -13.53141 -13.39030 -13.30692 -12.87791 -12.53819 -12.33716 -12.32926 -12.26424 -12.20763 -11.77304 -11.59884 -11.55826 -11.34827 -11.22210 -11.15063 -11.10859 -10.92478 -10.46171 -10.41861 -10.30031 -9.59750 -9.04331 -8.62215 -8.28959 -8.05933 -6.50568 -3.91608 -0.49920 2.10621 2.33679 2.43136 3.11488 3.21071 3.26380 3.32894 3.61191 3.77998 3.81274 4.02842 4.18384 4.20305 4.24456 4.34664 4.41053 4.63057 4.69655 4.75575 4.89354 4.97052 5.10306 5.14463 5.19457 5.19821 5.32931 5.39234 5.50577 5.58235 5.63140 5.75260 5.79092 5.87629 5.97106 6.11398 6.15017 6.99133 7.05537 7.42416 7.47048 7.60071 7.96788 8.51097 9.08882 9.44146 9.94949 10.66991 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.002158 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.738214 B =12969.079047 C =14489.010696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.073 3.927 6 H 0.062 0.938 7 N -0.656 5.656 8 C 0.049 3.951 9 C 0.439 3.561 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.102 3.898 21 N -0.603 5.603 22 C 0.559 3.441 23 O -0.530 6.530 24 C -0.659 4.659 25 S 2.456 3.544 26 C -0.662 4.662 27 O -0.922 6.922 28 O -0.923 6.923 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.358 0.642 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 11.196 -12.583 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.168 4.168 5 C -0.039 4.039 6 H 0.080 0.920 7 N -0.290 5.290 8 C -0.084 4.084 9 C 0.224 3.776 10 O -0.467 6.467 11 N -0.198 5.198 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.021 4.021 21 N -0.336 5.336 22 C 0.346 3.654 23 O -0.408 6.408 24 C -0.786 4.786 25 S 2.632 3.368 26 C -0.811 4.811 27 O -0.919 6.919 28 O -0.920 6.920 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.179 0.821 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.178 0.822 42 H 0.179 0.821 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.645 11.670 -12.930 20.413 hybrid contribution 1.994 -0.950 0.762 2.337 sum -8.651 10.720 -12.168 18.380 Atomic orbital electron populations 1.22166 0.94147 1.02780 1.03224 1.21619 0.95166 0.96317 0.83516 0.90121 1.22937 0.97943 0.99488 0.96414 1.22623 0.97019 0.90979 0.93256 0.92020 1.59978 1.24836 1.29894 1.14294 1.21755 0.89016 0.96648 1.00963 1.19743 0.83964 0.86961 0.86914 1.90537 1.43628 1.67658 1.44892 1.41866 1.11481 1.25303 1.41196 1.19702 0.98606 1.02376 1.22323 0.87874 1.25271 0.95235 0.99638 0.97730 1.69606 1.04251 1.41041 1.39327 0.85853 0.77474 0.81021 0.79924 1.20345 1.20899 1.19384 1.22500 0.95501 0.88579 0.95523 1.48357 1.51943 1.28761 1.04576 1.18666 0.80335 0.84267 0.82138 1.90853 1.40029 1.27106 1.82831 1.30915 1.13544 1.14061 1.20044 1.07161 0.76118 0.76559 0.76984 1.30384 1.14766 1.17983 1.17990 1.93598 1.27313 1.86588 1.84422 1.93598 1.78400 1.35293 1.84667 0.92081 0.91335 0.91002 0.88804 0.89672 0.82122 0.89644 0.93559 0.77470 0.91800 0.90470 0.89260 0.82191 0.82105 0.85077 0.84837 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.10 37.16 0.34 -1.26 16 2 C 0.14 1.33 3.46 -66.95 -0.23 1.10 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.13 5.95 -24.90 -0.15 -1.28 16 5 C 0.07 0.73 3.32 -65.56 -0.22 0.51 16 6 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 7 N -0.66 -8.80 6.00 -105.72 -0.63 -9.43 16 8 C 0.05 0.74 6.04 -4.97 -0.03 0.71 16 9 C 0.44 9.54 7.82 -10.99 -0.09 9.45 16 10 O -0.58 -14.84 15.78 5.54 0.09 -14.75 16 11 N -0.56 -13.38 5.29 -10.96 -0.06 -13.44 16 12 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 13 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -23.56 13.05 55.50 0.72 -22.83 16 16 Si 0.93 20.30 29.55 -169.99 -5.02 15.28 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 20 C 0.10 0.96 6.34 -2.53 -0.02 0.94 16 21 N -0.60 -6.19 3.06 -163.02 -0.50 -6.69 16 22 C 0.56 6.38 7.66 -10.99 -0.08 6.30 16 23 O -0.53 -7.99 14.66 2.55 0.04 -7.95 16 24 C -0.66 -4.35 5.29 36.00 0.19 -4.16 16 25 S 2.46 20.04 4.60 -107.50 -0.49 19.54 16 26 C -0.66 -2.21 10.62 101.05 1.07 -1.14 16 27 O -0.92 -11.36 17.95 -59.52 -1.07 -12.43 16 28 O -0.92 -11.36 17.94 -59.53 -1.07 -12.42 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.84 6.88 -51.92 -0.36 0.48 16 32 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.36 5.02 8.23 -39.29 -0.32 4.69 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.39 8.88 7.90 -40.82 -0.32 8.56 16 38 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.08 0.58 7.47 -51.93 -0.39 0.19 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.16 0.53 7.85 -51.92 -0.41 0.12 16 42 H 0.16 0.57 8.14 -51.92 -0.42 0.14 16 43 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 45 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -38.61 389.08 -8.36 -46.97 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.78 Total: 8.80 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 0.55 Total: 3.50 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.47 Total: -52.40 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -2.01 Total: -47.56 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 20.04 SS G_CDS: -0.49 Total: 19.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.61 -8.36 -46.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725586709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.130 kcal (2) G-P(sol) polarization free energy of solvation -38.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds