Wall clock time and date at job start Wed Apr 1 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.99686 * 2 1 4 4 C 1.54324 * 109.87945 * 121.09167 * 2 1 3 5 5 C 1.55157 * 102.93850 * 141.61247 * 4 2 1 6 6 H 1.09004 * 111.03812 * 82.59183 * 5 4 2 7 7 N 1.46901 * 111.00117 * 206.42252 * 5 4 2 8 8 C 1.46905 * 110.99870 * 198.64991 * 7 5 4 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 5 10 10 O 1.21297 * 120.00124 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00196 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00290 * 180.02562 * 11 9 8 13 13 H 1.07990 * 119.99768 * 359.97438 * 12 11 9 14 14 C 1.38956 * 119.99812 * 180.02562 * 12 11 9 15 15 N 1.31408 * 119.99864 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99403 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47056 * 90.00522 * 16 14 12 18 18 H 1.48505 * 109.46897 * 209.99554 * 16 14 12 19 19 H 1.48495 * 109.47527 * 330.00091 * 16 14 12 20 20 C 1.54909 * 101.58450 * 324.49925 * 5 4 2 21 21 N 1.47017 * 109.88466 * 238.90371 * 2 1 3 22 22 C 1.34775 * 125.65117 * 61.67762 * 21 2 1 23 23 O 1.21280 * 120.00127 * 359.97438 * 22 21 2 24 24 C 1.50695 * 120.00181 * 179.97438 * 22 21 2 25 25 S 1.81399 * 109.47189 * 179.97438 * 24 22 21 26 26 C 1.81408 * 101.92163 * 179.97438 * 25 24 22 27 27 O 1.42099 * 108.57757 * 294.48446 * 25 24 22 28 28 O 1.42102 * 108.58049 * 65.51495 * 25 24 22 29 29 H 1.09000 * 109.47031 * 179.64296 * 1 2 3 30 30 H 1.08994 * 109.47294 * 299.64865 * 1 2 3 31 31 H 1.09008 * 109.46526 * 59.64304 * 1 2 3 32 32 H 1.08998 * 110.72208 * 23.25090 * 4 2 1 33 33 H 1.09000 * 110.72129 * 259.97615 * 4 2 1 34 34 H 1.00901 * 111.00067 * 322.60166 * 7 5 4 35 35 H 1.09001 * 109.46798 * 300.00327 * 8 7 5 36 36 H 1.08998 * 109.46961 * 60.00043 * 8 7 5 37 37 H 0.97009 * 119.99629 * 359.97438 * 11 9 8 38 38 H 0.97004 * 119.99642 * 179.97438 * 15 14 12 39 39 H 1.08992 * 110.36779 * 155.85360 * 20 5 4 40 40 H 1.09005 * 110.36313 * 278.06312 * 20 5 4 41 41 H 1.09005 * 109.47215 * 300.00010 * 24 22 21 42 42 H 1.09004 * 109.47559 * 59.99597 * 24 22 21 43 43 H 1.08994 * 109.47181 * 60.00205 * 26 25 24 44 44 H 1.09003 * 109.47105 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.46931 * 299.99646 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 3.2876 -1.5142 0.6925 6 1 4.1658 -0.8693 0.6606 7 7 3.5538 -2.7227 1.4840 8 6 4.9266 -3.2001 1.2703 9 6 5.1620 -4.4385 2.0960 10 8 4.2735 -4.8804 2.7936 11 7 6.3598 -5.0553 2.0595 12 6 6.5738 -6.1822 2.8104 13 1 5.7827 -6.5755 3.4314 14 6 7.8090 -6.8177 2.7730 15 7 8.7718 -6.3387 2.0177 16 14 8.1007 -8.3528 3.7966 17 1 7.7373 -9.5538 3.0023 18 1 9.5336 -8.4276 4.1794 19 1 7.2633 -8.2975 5.0217 20 6 2.8146 -1.8794 -0.7367 21 7 2.0301 -0.7140 -1.1839 22 6 1.8087 -0.3613 -2.4656 23 8 1.1453 0.6221 -2.7181 24 6 2.3854 -1.1888 -3.5853 25 16 1.9138 -0.4622 -5.1791 26 6 2.7007 -1.5968 -6.3557 27 8 0.5040 -0.5650 -5.3240 28 8 2.5324 0.8117 -5.2967 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5194 -0.8869 32 1 1.3051 -1.4459 1.6183 33 1 2.3528 -0.0459 2.0201 34 1 3.3761 -2.5598 2.4638 35 1 5.0697 -3.4345 0.2154 36 1 5.6317 -2.4244 1.5690 37 1 7.0703 -4.7021 1.5014 38 1 9.6341 -6.7821 1.9920 39 1 3.6717 -2.0339 -1.3920 40 1 2.1903 -2.7726 -0.7129 41 1 3.4720 -1.2070 -3.5011 42 1 1.9990 -2.2061 -3.5216 43 1 2.3057 -2.6022 -6.2105 44 1 2.4908 -1.2678 -7.3735 45 1 3.7781 -1.6021 -6.1901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725586709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:30 Heat of formation + Delta-G solvation = -160.921142 kcal Electronic energy + Delta-G solvation = -28409.567355 eV Core-core repulsion = 24167.520273 eV Total energy + Delta-G solvation = -4242.047082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.47321 -40.12918 -39.02323 -38.00438 -36.99875 -36.25893 -35.59813 -33.56280 -33.23061 -31.20861 -30.96923 -30.00798 -27.92291 -26.91211 -25.78208 -23.39439 -21.86450 -21.09483 -20.33711 -19.85518 -19.69194 -18.60713 -18.00481 -17.74165 -17.39155 -17.10554 -16.89498 -16.65329 -16.32806 -16.07783 -15.89857 -15.54386 -15.21410 -14.80797 -14.64754 -14.36455 -14.03588 -13.95699 -13.89334 -13.83839 -13.61757 -13.48625 -13.38262 -13.16971 -13.08033 -13.02135 -12.93857 -12.78974 -12.39255 -12.23733 -12.12266 -12.03030 -11.99301 -11.78574 -11.63995 -11.47830 -11.27164 -10.31082 -9.98348 -9.86182 -9.38889 -8.44712 -5.92486 -1.04471 1.30986 1.39593 1.44310 1.55810 1.69614 1.82855 2.09577 2.30642 2.69095 2.94935 3.09306 3.23649 3.27499 3.41997 3.58207 3.67495 3.91292 4.01633 4.13084 4.16188 4.26776 4.31047 4.31180 4.34895 4.37420 4.53245 4.59836 4.65021 4.68778 4.78052 4.91443 4.96132 5.00479 5.10243 5.21096 5.30491 5.44000 5.90249 6.11214 6.25660 6.36844 6.63216 6.79771 7.16082 7.60519 8.15857 8.72469 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.002158 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.738214 B =12969.079047 C =14489.010696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.077 0.923 4 C -0.120 4.120 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.666 5.666 8 C 0.064 3.936 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.574 5.574 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.011 4.011 15 N -0.919 5.919 16 Si 0.988 3.012 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.274 1.274 20 C 0.101 3.899 21 N -0.601 5.601 22 C 0.543 3.457 23 O -0.579 6.579 24 C -0.649 4.649 25 S 2.439 3.561 26 C -0.629 4.629 27 O -0.982 6.982 28 O -0.981 6.981 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.353 0.647 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.201 0.799 42 H 0.197 0.803 43 H 0.160 0.840 44 H 0.142 0.858 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 9.967 -13.328 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 H 0.096 0.904 4 C -0.158 4.158 5 C -0.036 4.036 6 H 0.094 0.906 7 N -0.300 5.300 8 C -0.068 4.068 9 C 0.226 3.774 10 O -0.510 6.510 11 N -0.211 5.211 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.211 4.211 15 N -0.560 5.560 16 Si 0.812 3.188 17 H -0.197 1.197 18 H -0.198 1.198 19 H -0.199 1.199 20 C -0.022 4.022 21 N -0.334 5.334 22 C 0.331 3.669 23 O -0.460 6.460 24 C -0.777 4.777 25 S 2.623 3.377 26 C -0.783 4.783 27 O -0.979 6.979 28 O -0.978 6.978 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.173 0.827 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.218 0.782 42 H 0.214 0.786 43 H 0.178 0.822 44 H 0.160 0.840 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.974 10.485 -13.675 19.429 hybrid contribution 1.442 -0.589 1.000 1.850 sum -7.533 9.896 -12.676 17.758 Atomic orbital electron populations 1.22108 0.94517 1.02409 1.02786 1.21695 0.94978 0.96501 0.84068 0.90445 1.22876 0.97309 0.99429 0.96170 1.22663 0.97881 0.89903 0.93173 0.90650 1.59954 1.23694 1.31904 1.14414 1.21633 0.90620 0.93752 1.00841 1.20917 0.82461 0.87956 0.86082 1.90511 1.44726 1.69212 1.46582 1.41932 1.12527 1.25163 1.41492 1.19628 0.98649 1.04239 1.23571 0.90405 1.25961 0.94678 1.01964 0.98517 1.69656 1.04513 1.41970 1.39904 0.84992 0.77597 0.77872 0.78299 1.19707 1.19763 1.19883 1.22595 0.96207 0.87788 0.95617 1.48447 1.51616 1.28848 1.04470 1.19485 0.79887 0.84218 0.83303 1.90838 1.42174 1.29428 1.83607 1.30860 1.15893 1.14500 1.16474 1.07132 0.75181 0.77037 0.78327 1.30114 1.15845 1.16845 1.15466 1.93526 1.31174 1.87669 1.85532 1.93526 1.78719 1.39768 1.85760 0.92312 0.89687 0.93548 0.89263 0.88040 0.82707 0.87003 0.91260 0.76889 0.91365 0.87712 0.89711 0.78205 0.78579 0.82152 0.83958 0.82025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.10 71.98 0.66 -2.48 16 2 C 0.13 2.43 3.46 45.34 0.16 2.58 16 3 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.12 -1.85 5.95 31.78 0.19 -1.66 16 5 C 0.07 1.26 3.32 46.31 0.15 1.42 16 6 H 0.08 1.14 7.92 -2.39 -0.02 1.12 16 7 N -0.67 -16.18 6.00 -488.39 -2.93 -19.11 16 8 C 0.06 1.74 6.04 85.55 0.52 2.26 16 9 C 0.44 18.61 7.82 87.66 0.69 19.30 16 10 O -0.62 -31.81 15.78 -3.08 -0.05 -31.86 16 11 N -0.57 -27.04 5.29 -306.99 -1.62 -28.67 16 12 C -0.33 -17.79 9.68 84.04 0.81 -16.98 16 13 H 0.08 4.50 7.16 -2.92 -0.02 4.48 16 14 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 15 N -0.92 -47.15 13.05 21.66 0.28 -46.87 16 16 Si 0.99 41.08 29.55 68.60 2.03 43.11 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 C 0.10 1.55 6.34 86.85 0.55 2.10 16 21 N -0.60 -11.36 3.06 -788.07 -2.41 -13.78 16 22 C 0.54 11.97 7.66 87.66 0.67 12.64 16 23 O -0.58 -18.29 14.66 -0.15 0.00 -18.29 16 24 C -0.65 -6.85 5.29 71.23 0.38 -6.47 16 25 S 2.44 38.33 4.60 -56.49 -0.26 38.07 16 26 C -0.63 -1.70 10.62 113.37 1.20 -0.49 16 27 O -0.98 -25.37 17.95 -125.75 -2.26 -27.63 16 28 O -0.98 -25.02 17.94 -125.74 -2.26 -27.28 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.15 6.88 -2.38 -0.02 1.14 16 32 H 0.09 1.50 7.85 -2.39 -0.02 1.48 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.35 9.28 8.23 -89.69 -0.74 8.54 16 35 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 37 H 0.40 17.59 7.90 -92.70 -0.73 16.86 16 38 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 39 H 0.10 1.05 7.47 -2.39 -0.02 1.03 16 40 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.20 0.40 7.85 -2.39 -0.02 0.38 16 42 H 0.20 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.16 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.16 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -89.53 389.08 -3.49 -93.01 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.45 Total: 27.19 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.44 Total: 12.10 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -6.69 Total: -108.42 kcal Atomic # 8 Polarization: -100.49 SS G_CDS: -4.56 Total: -105.05 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 38.33 SS G_CDS: -0.26 Total: 38.07 kcal Total: -89.53 -3.49 -93.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725586709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.908 kcal (2) G-P(sol) polarization free energy of solvation -89.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds