Wall clock time and date at job start Wed Apr 1 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.87205 * 2 1 4 4 C 1.54316 * 109.88199 * 238.98087 * 2 1 3 5 5 C 1.55154 * 102.94149 * 218.38969 * 4 2 1 6 6 H 1.08999 * 111.00567 * 277.39252 * 5 4 2 7 7 N 1.46901 * 111.00247 * 153.57886 * 5 4 2 8 8 C 1.46902 * 110.99844 * 154.99916 * 7 5 4 9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00004 * 180.02562 * 9 8 7 12 12 C 1.37092 * 119.99804 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00499 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99671 * 179.72159 * 12 11 9 15 15 N 1.31414 * 120.00152 * 0.27554 * 14 12 11 16 16 Si 1.86803 * 119.99914 * 180.27723 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00084 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00035 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99834 * 16 14 12 20 20 C 1.54903 * 101.58213 * 35.50690 * 5 4 2 21 21 N 1.47021 * 109.87831 * 121.17361 * 2 1 3 22 22 C 1.34777 * 125.65153 * 298.38043 * 21 2 1 23 23 O 1.21285 * 119.99850 * 359.97438 * 22 21 2 24 24 C 1.50704 * 120.00342 * 180.02562 * 22 21 2 25 25 S 1.81399 * 109.47170 * 179.97438 * 24 22 21 26 26 C 1.81400 * 101.91752 * 179.97438 * 25 24 22 27 27 O 1.42101 * 108.57818 * 294.48360 * 25 24 22 28 28 O 1.42097 * 108.57698 * 65.51243 * 25 24 22 29 29 H 1.08996 * 109.46920 * 181.01553 * 1 2 3 30 30 H 1.09000 * 109.47121 * 301.01925 * 1 2 3 31 31 H 1.09002 * 109.47062 * 61.02111 * 1 2 3 32 32 H 1.09005 * 110.71966 * 100.02907 * 4 2 1 33 33 H 1.08998 * 110.87540 * 336.82563 * 4 2 1 34 34 H 1.00894 * 111.00401 * 31.04815 * 7 5 4 35 35 H 1.09004 * 109.47131 * 60.00016 * 8 7 5 36 36 H 1.08994 * 109.47471 * 299.99766 * 8 7 5 37 37 H 0.97000 * 119.99715 * 359.97438 * 11 9 8 38 38 H 0.96991 * 119.99827 * 179.97438 * 15 14 12 39 39 H 1.08996 * 110.37230 * 81.82701 * 20 5 4 40 40 H 1.09008 * 110.36655 * 204.15473 * 20 5 4 41 41 H 1.08996 * 109.46461 * 299.99918 * 24 22 21 42 42 H 1.09000 * 109.47017 * 59.99188 * 24 22 21 43 43 H 1.08991 * 109.47580 * 59.99947 * 26 25 24 44 44 H 1.09001 * 109.46956 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.47032 * 299.99386 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5133 -0.6943 6 1 4.1656 -0.8681 -0.6620 7 7 3.5539 -2.7208 -1.4874 8 6 4.9667 -3.1119 -1.3926 9 6 5.2010 -4.3518 -2.2165 10 8 4.2817 -4.8595 -2.8234 11 7 6.4322 -4.8967 -2.2790 12 6 6.6455 -6.0243 -3.0289 13 1 5.8271 -6.4759 -3.5700 14 6 7.9160 -6.5827 -3.0980 15 7 8.9120 -6.0331 -2.4401 16 14 8.2083 -8.1148 -4.1261 17 1 8.5774 -7.7198 -5.5092 18 1 9.3105 -8.9097 -3.5275 19 1 6.9692 -8.9327 -4.1588 20 6 2.8145 -1.8804 0.7342 21 7 2.0300 -0.7157 1.1830 22 6 1.8075 -0.3653 2.4652 23 8 1.1439 0.6177 2.7189 24 6 2.3842 -1.1943 3.5839 25 16 1.9124 -0.4698 5.1786 26 6 2.6980 -1.6068 6.3536 27 8 2.5309 0.8039 5.2979 28 8 0.5026 -0.5729 5.3232 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5296 0.8807 31 1 -0.3633 0.4979 -0.8990 32 1 2.3530 -0.0432 -2.0201 33 1 1.3065 -1.4436 -1.6230 34 1 3.2788 -2.5897 -2.4493 35 1 5.2184 -3.3149 -0.3516 36 1 5.5937 -2.3027 -1.7669 37 1 7.1675 -4.4905 -1.7939 38 1 9.7988 -6.4231 -2.4881 39 1 2.1886 -2.7724 0.7091 40 1 3.6716 -2.0357 1.3896 41 1 1.9985 -2.2116 3.5182 42 1 3.4709 -1.2116 3.5003 43 1 3.7753 -1.6128 6.1886 44 1 2.4878 -1.2794 7.3718 45 1 2.3023 -2.6117 6.2067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725586711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:40 Heat of formation + Delta-G solvation = -127.035358 kcal Electronic energy + Delta-G solvation = -28374.649376 eV Core-core repulsion = 24134.071692 eV Total energy + Delta-G solvation = -4240.577684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -40.65246 -38.62483 -37.92369 -37.27621 -36.27522 -34.99186 -33.89869 -32.79314 -31.33901 -30.53123 -30.15004 -29.57701 -26.43790 -26.15168 -24.18349 -22.56049 -21.08880 -19.70043 -19.29027 -19.03679 -18.01542 -17.83367 -17.18382 -16.77127 -16.46796 -16.35285 -15.90373 -15.39844 -15.27869 -14.84634 -14.59625 -14.32277 -13.92949 -13.77043 -13.69040 -13.64627 -13.52833 -13.38494 -13.29069 -12.88108 -12.54392 -12.34161 -12.33309 -12.26637 -12.20716 -11.75637 -11.59762 -11.56901 -11.37249 -11.23457 -11.15363 -11.10718 -10.92341 -10.46000 -10.42266 -10.29881 -9.59682 -9.04261 -8.61740 -8.28750 -8.05779 -6.50376 -3.91446 -0.50118 2.10678 2.33481 2.43171 3.11559 3.21148 3.26488 3.32803 3.60971 3.77925 3.81265 4.03383 4.18448 4.20336 4.24782 4.34295 4.40273 4.62837 4.69706 4.74680 4.89693 4.97417 5.10317 5.14366 5.19052 5.20315 5.33059 5.38858 5.50505 5.58270 5.62303 5.75483 5.79265 5.87042 5.96266 6.11033 6.15338 6.99661 7.05596 7.42577 7.47177 7.60183 7.96868 8.51270 9.09012 9.44309 9.95094 10.67190 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.002116 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.599539 B =13231.340778 C =14660.362260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.081 0.919 4 C -0.132 4.132 5 C 0.073 3.927 6 H 0.065 0.935 7 N -0.656 5.656 8 C 0.049 3.951 9 C 0.439 3.561 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.103 3.897 21 N -0.603 5.603 22 C 0.559 3.441 23 O -0.531 6.531 24 C -0.659 4.659 25 S 2.456 3.544 26 C -0.662 4.662 27 O -0.922 6.922 28 O -0.922 6.922 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.358 0.642 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 10.717 13.192 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.171 4.171 5 C -0.039 4.039 6 H 0.083 0.917 7 N -0.290 5.290 8 C -0.084 4.084 9 C 0.224 3.776 10 O -0.467 6.467 11 N -0.198 5.198 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.020 4.020 21 N -0.337 5.337 22 C 0.346 3.654 23 O -0.408 6.408 24 C -0.785 4.785 25 S 2.632 3.368 26 C -0.811 4.811 27 O -0.919 6.919 28 O -0.919 6.919 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.179 0.821 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.179 0.821 42 H 0.178 0.822 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.885 11.145 13.622 20.695 hybrid contribution 1.930 -0.869 -0.902 2.301 sum -8.955 10.276 12.720 18.644 Atomic orbital electron populations 1.22168 0.94170 1.02785 1.03203 1.21600 0.95156 0.96305 0.83528 0.90106 1.22983 0.98007 0.99607 0.96473 1.22633 0.97039 0.90891 0.93309 0.91721 1.59957 1.19474 1.32263 1.17315 1.21767 0.88605 0.96909 1.01078 1.19748 0.83993 0.87260 0.86585 1.90535 1.42573 1.64534 1.49087 1.41866 1.08315 1.25666 1.43997 1.19703 0.95625 1.02812 1.24868 0.87873 1.25274 0.95103 0.99600 0.97903 1.69604 1.01325 1.41171 1.42129 0.85853 0.78185 0.80842 0.79398 1.20375 1.20884 1.19360 1.22512 0.95474 0.88493 0.95571 1.48365 1.51937 1.28806 1.04548 1.18671 0.80336 0.84270 0.82141 1.90854 1.40038 1.27144 1.82807 1.30913 1.13546 1.14022 1.20060 1.07158 0.76118 0.76557 0.76985 1.30384 1.14754 1.18013 1.17983 1.93599 1.78408 1.35288 1.84655 1.93597 1.27324 1.86589 1.84422 0.92099 0.91002 0.91343 0.89667 0.88867 0.82128 0.89621 0.93540 0.77465 0.91795 0.89293 0.90444 0.82105 0.82197 0.85085 0.84838 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.10 37.16 0.34 -1.26 16 2 C 0.14 1.33 3.46 -66.96 -0.23 1.10 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.15 5.87 -24.90 -0.15 -1.29 16 5 C 0.07 0.73 3.38 -65.57 -0.22 0.50 16 6 H 0.06 0.62 7.83 -51.93 -0.41 0.21 16 7 N -0.66 -8.80 6.04 -105.73 -0.64 -9.43 16 8 C 0.05 0.75 6.03 -4.97 -0.03 0.72 16 9 C 0.44 9.55 7.82 -10.98 -0.09 9.46 16 10 O -0.58 -14.84 15.78 5.55 0.09 -14.76 16 11 N -0.56 -13.40 5.29 -10.96 -0.06 -13.46 16 12 C -0.30 -8.03 9.68 -14.93 -0.14 -8.17 16 13 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 14 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 15 N -0.90 -23.60 13.05 55.50 0.72 -22.87 16 16 Si 0.93 20.31 29.55 -169.99 -5.02 15.29 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 C 0.10 0.96 6.39 -2.53 -0.02 0.94 16 21 N -0.60 -6.17 3.06 -163.02 -0.50 -6.67 16 22 C 0.56 6.36 7.66 -10.98 -0.08 6.28 16 23 O -0.53 -7.98 14.67 2.55 0.04 -7.95 16 24 C -0.66 -4.32 5.30 36.01 0.19 -4.13 16 25 S 2.46 19.95 4.60 -107.50 -0.49 19.46 16 26 C -0.66 -2.18 10.62 101.05 1.07 -1.10 16 27 O -0.92 -11.33 17.95 -59.53 -1.07 -12.40 16 28 O -0.92 -11.33 17.95 -59.52 -1.07 -12.40 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.84 6.90 -51.93 -0.36 0.48 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.84 7.86 -51.93 -0.41 0.43 16 34 H 0.36 5.01 8.14 -39.29 -0.32 4.69 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.39 8.90 7.90 -40.82 -0.32 8.58 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.58 7.48 -51.92 -0.39 0.20 16 41 H 0.16 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.16 0.53 7.85 -51.92 -0.41 0.12 16 43 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.13 0.38 8.14 -51.92 -0.42 -0.05 16 45 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -38.63 388.99 -8.36 -46.99 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.77 Total: 8.80 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 0.55 Total: 3.54 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.47 Total: -52.44 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -2.01 Total: -47.50 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 19.95 SS G_CDS: -0.49 Total: 19.46 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.63 -8.36 -46.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725586711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.042 kcal (2) G-P(sol) polarization free energy of solvation -38.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds