Wall clock time and date at job start Wed Apr 1 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.87205 * 2 1 4 4 C 1.54316 * 109.88199 * 238.98087 * 2 1 3 5 5 C 1.55154 * 102.94149 * 218.38969 * 4 2 1 6 6 H 1.08999 * 111.00567 * 277.39252 * 5 4 2 7 7 N 1.46901 * 111.00247 * 153.57886 * 5 4 2 8 8 C 1.46902 * 110.99844 * 154.99916 * 7 5 4 9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00004 * 180.02562 * 9 8 7 12 12 C 1.37092 * 119.99804 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00499 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99671 * 179.72159 * 12 11 9 15 15 N 1.31414 * 120.00152 * 0.27554 * 14 12 11 16 16 Si 1.86803 * 119.99914 * 180.27723 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00084 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00035 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99834 * 16 14 12 20 20 C 1.54903 * 101.58213 * 35.50690 * 5 4 2 21 21 N 1.47021 * 109.87831 * 121.17361 * 2 1 3 22 22 C 1.34777 * 125.65153 * 298.38043 * 21 2 1 23 23 O 1.21285 * 119.99850 * 359.97438 * 22 21 2 24 24 C 1.50704 * 120.00342 * 180.02562 * 22 21 2 25 25 S 1.81399 * 109.47170 * 179.97438 * 24 22 21 26 26 C 1.81400 * 101.91752 * 179.97438 * 25 24 22 27 27 O 1.42101 * 108.57818 * 294.48360 * 25 24 22 28 28 O 1.42097 * 108.57698 * 65.51243 * 25 24 22 29 29 H 1.08996 * 109.46920 * 181.01553 * 1 2 3 30 30 H 1.09000 * 109.47121 * 301.01925 * 1 2 3 31 31 H 1.09002 * 109.47062 * 61.02111 * 1 2 3 32 32 H 1.09005 * 110.71966 * 100.02907 * 4 2 1 33 33 H 1.08998 * 110.87540 * 336.82563 * 4 2 1 34 34 H 1.00894 * 111.00401 * 31.04815 * 7 5 4 35 35 H 1.09004 * 109.47131 * 60.00016 * 8 7 5 36 36 H 1.08994 * 109.47471 * 299.99766 * 8 7 5 37 37 H 0.97000 * 119.99715 * 359.97438 * 11 9 8 38 38 H 0.96991 * 119.99827 * 179.97438 * 15 14 12 39 39 H 1.08996 * 110.37230 * 81.82701 * 20 5 4 40 40 H 1.09008 * 110.36655 * 204.15473 * 20 5 4 41 41 H 1.08996 * 109.46461 * 299.99918 * 24 22 21 42 42 H 1.09000 * 109.47017 * 59.99188 * 24 22 21 43 43 H 1.08991 * 109.47580 * 59.99947 * 26 25 24 44 44 H 1.09001 * 109.46956 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.47032 * 299.99386 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5133 -0.6943 6 1 4.1656 -0.8681 -0.6620 7 7 3.5539 -2.7208 -1.4874 8 6 4.9667 -3.1119 -1.3926 9 6 5.2010 -4.3518 -2.2165 10 8 4.2817 -4.8595 -2.8234 11 7 6.4322 -4.8967 -2.2790 12 6 6.6455 -6.0243 -3.0289 13 1 5.8271 -6.4759 -3.5700 14 6 7.9160 -6.5827 -3.0980 15 7 8.9120 -6.0331 -2.4401 16 14 8.2083 -8.1148 -4.1261 17 1 8.5774 -7.7198 -5.5092 18 1 9.3105 -8.9097 -3.5275 19 1 6.9692 -8.9327 -4.1588 20 6 2.8145 -1.8804 0.7342 21 7 2.0300 -0.7157 1.1830 22 6 1.8075 -0.3653 2.4652 23 8 1.1439 0.6177 2.7189 24 6 2.3842 -1.1943 3.5839 25 16 1.9124 -0.4698 5.1786 26 6 2.6980 -1.6068 6.3536 27 8 2.5309 0.8039 5.2979 28 8 0.5026 -0.5729 5.3232 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5296 0.8807 31 1 -0.3633 0.4979 -0.8990 32 1 2.3530 -0.0432 -2.0201 33 1 1.3065 -1.4436 -1.6230 34 1 3.2788 -2.5897 -2.4493 35 1 5.2184 -3.3149 -0.3516 36 1 5.5937 -2.3027 -1.7669 37 1 7.1675 -4.4905 -1.7939 38 1 9.7988 -6.4231 -2.4881 39 1 2.1886 -2.7724 0.7091 40 1 3.6716 -2.0357 1.3896 41 1 1.9985 -2.2116 3.5182 42 1 3.4709 -1.2116 3.5003 43 1 3.7753 -1.6128 6.1886 44 1 2.4878 -1.2794 7.3718 45 1 2.3023 -2.6117 6.2067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725586711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:39 Heat of formation + Delta-G solvation = -160.885472 kcal Electronic energy + Delta-G solvation = -28376.117227 eV Core-core repulsion = 24134.071692 eV Total energy + Delta-G solvation = -4242.045535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.46898 -40.12976 -39.02308 -38.00456 -36.99890 -36.26016 -35.59929 -33.55680 -33.23167 -31.22352 -30.96695 -30.00744 -27.91378 -26.90492 -25.77271 -23.39325 -21.90321 -21.08585 -20.34273 -19.86215 -19.69381 -18.60567 -17.96407 -17.75502 -17.39054 -17.10066 -16.87869 -16.67177 -16.32449 -16.08845 -15.89629 -15.53875 -15.22169 -14.81396 -14.60270 -14.36312 -14.04223 -13.95764 -13.89463 -13.84449 -13.61971 -13.48546 -13.37520 -13.16992 -13.08049 -13.02135 -12.93695 -12.78560 -12.39294 -12.25418 -12.12035 -12.05117 -11.99919 -11.77298 -11.64194 -11.48036 -11.27433 -10.31083 -9.98496 -9.85840 -9.38495 -8.44754 -5.92592 -1.04408 1.31178 1.39527 1.44248 1.55874 1.69810 1.82903 2.09452 2.30592 2.69061 2.95298 3.09331 3.23531 3.27674 3.42090 3.59088 3.66976 3.91459 4.01063 4.13084 4.16390 4.27157 4.31130 4.31144 4.34987 4.37393 4.53479 4.59966 4.65620 4.68515 4.77789 4.91154 4.96566 5.00449 5.09477 5.20441 5.30401 5.43889 5.90546 6.11277 6.26153 6.36835 6.63101 6.80026 7.15960 7.60399 8.15663 8.72461 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.002116 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.599539 B =13231.340778 C =14660.362260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.077 0.923 4 C -0.122 4.122 5 C 0.074 3.926 6 H 0.078 0.922 7 N -0.666 5.666 8 C 0.064 3.936 9 C 0.438 3.562 10 O -0.624 6.624 11 N -0.574 5.574 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.988 3.012 17 H -0.273 1.273 18 H -0.272 1.272 19 H -0.273 1.273 20 C 0.101 3.899 21 N -0.601 5.601 22 C 0.542 3.458 23 O -0.579 6.579 24 C -0.649 4.649 25 S 2.439 3.561 26 C -0.629 4.629 27 O -0.981 6.981 28 O -0.982 6.982 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.353 0.647 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.197 0.803 42 H 0.201 0.799 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.731 9.508 13.871 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.036 4.036 6 H 0.096 0.904 7 N -0.299 5.299 8 C -0.068 4.068 9 C 0.226 3.774 10 O -0.510 6.510 11 N -0.211 5.211 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.813 3.187 17 H -0.198 1.198 18 H -0.197 1.197 19 H -0.198 1.198 20 C -0.021 4.021 21 N -0.334 5.334 22 C 0.331 3.669 23 O -0.461 6.461 24 C -0.777 4.777 25 S 2.623 3.377 26 C -0.783 4.783 27 O -0.978 6.978 28 O -0.979 6.979 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.173 0.827 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.214 0.786 42 H 0.218 0.782 43 H 0.180 0.820 44 H 0.160 0.840 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.215 9.983 14.297 19.723 hybrid contribution 1.376 -0.517 -1.113 1.844 sum -7.839 9.466 13.184 18.024 Atomic orbital electron populations 1.22111 0.94534 1.02391 1.02795 1.21677 0.94973 0.96481 0.84091 0.90455 1.22922 0.97379 0.99557 0.96203 1.22672 0.97921 0.89827 0.93205 0.90368 1.59934 1.18229 1.34343 1.17435 1.21644 0.90213 0.93969 1.00992 1.20918 0.82557 0.88279 0.85653 1.90510 1.43663 1.66171 1.50666 1.41934 1.09366 1.25489 1.44342 1.19631 0.95539 1.04580 1.26326 0.90380 1.25970 0.94552 1.01966 0.98663 1.69655 1.01602 1.42138 1.42692 0.84988 0.77960 0.77636 0.78152 1.19831 1.19693 1.19806 1.22603 0.96161 0.87707 0.95654 1.48456 1.51606 1.28890 1.04444 1.19492 0.79887 0.84224 0.83306 1.90840 1.42186 1.29468 1.83583 1.30858 1.15882 1.14462 1.16494 1.07133 0.75183 0.77042 0.78329 1.30112 1.15840 1.16855 1.15459 1.93526 1.78728 1.39773 1.85748 1.93524 1.31184 1.87672 1.85531 0.92324 0.93553 0.89689 0.88064 0.89227 0.82706 0.87044 0.91254 0.76902 0.91364 0.89730 0.87743 0.78574 0.78225 0.82028 0.83956 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.10 71.98 0.65 -2.47 16 2 C 0.13 2.42 3.46 45.34 0.16 2.58 16 3 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 4 C -0.12 -1.88 5.87 31.78 0.19 -1.69 16 5 C 0.07 1.26 3.38 46.30 0.16 1.42 16 6 H 0.08 1.18 7.83 -2.39 -0.02 1.16 16 7 N -0.67 -16.16 6.04 -488.41 -2.95 -19.10 16 8 C 0.06 1.76 6.03 85.56 0.52 2.28 16 9 C 0.44 18.64 7.82 87.66 0.69 19.33 16 10 O -0.62 -31.79 15.78 -3.07 -0.05 -31.84 16 11 N -0.57 -27.11 5.29 -306.97 -1.62 -28.74 16 12 C -0.33 -17.81 9.68 84.04 0.81 -16.99 16 13 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 14 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 15 N -0.92 -47.30 13.05 21.67 0.28 -47.02 16 16 Si 0.99 41.12 29.55 68.60 2.03 43.15 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 20 C 0.10 1.56 6.39 86.85 0.55 2.11 16 21 N -0.60 -11.34 3.06 -788.06 -2.42 -13.76 16 22 C 0.54 11.95 7.66 87.66 0.67 12.62 16 23 O -0.58 -18.29 14.67 -0.18 0.00 -18.29 16 24 C -0.65 -6.82 5.30 71.24 0.38 -6.44 16 25 S 2.44 38.21 4.60 -56.49 -0.26 37.95 16 26 C -0.63 -1.64 10.62 113.37 1.20 -0.43 16 27 O -0.98 -24.99 17.95 -125.75 -2.26 -27.25 16 28 O -0.98 -25.32 17.95 -125.76 -2.26 -27.58 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.15 6.90 -2.39 -0.02 1.13 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.09 1.47 7.86 -2.39 -0.02 1.45 16 34 H 0.35 9.26 8.14 -89.70 -0.73 8.53 16 35 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 37 H 0.40 17.65 7.90 -92.71 -0.73 16.92 16 38 H 0.28 13.38 8.31 -92.71 -0.77 12.61 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.06 7.48 -2.38 -0.02 1.04 16 41 H 0.20 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.20 0.40 7.85 -2.39 -0.02 0.38 16 43 H 0.16 -0.43 8.14 -2.40 -0.02 -0.45 16 44 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.16 -0.39 8.14 -2.39 -0.02 -0.41 16 Total: -1.00 -89.57 388.99 -3.49 -93.06 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.44 Total: 27.24 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 6.44 Total: 12.17 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -6.70 Total: -108.61 kcal Atomic # 8 Polarization: -100.39 SS G_CDS: -4.56 Total: -104.96 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 38.21 SS G_CDS: -0.26 Total: 37.95 kcal Total: -89.57 -3.49 -93.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725586711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.824 kcal (2) G-P(sol) polarization free energy of solvation -89.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds