Wall clock time and date at job start Wed Apr 1 2020 07:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46768 * 2 1 4 4 C 1.52994 * 109.47415 * 120.00321 * 2 1 3 5 5 N 1.46496 * 109.47540 * 175.00131 * 4 2 1 6 6 C 1.34775 * 120.00360 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99857 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.00187 * 179.97438 * 6 5 4 9 9 H 1.09000 * 110.00849 * 59.30025 * 8 6 5 10 10 C 1.53879 * 110.02774 * 180.68018 * 8 6 5 11 11 C 1.54162 * 108.70107 * 166.47187 * 10 8 6 12 12 S 1.82917 * 105.09044 * 332.09541 * 11 10 8 13 13 O 1.42091 * 109.35437 * 115.52061 * 12 11 10 14 14 O 1.42096 * 109.35228 * 248.59109 * 12 11 10 15 15 C 1.55046 * 110.02807 * 297.92583 * 8 6 5 16 16 N 1.46901 * 109.47222 * 240.00743 * 2 1 3 17 17 C 1.46895 * 111.00600 * 84.99715 * 16 2 1 18 18 C 1.50693 * 109.47341 * 180.02562 * 17 16 2 19 19 O 1.21292 * 120.00320 * 359.97438 * 18 17 16 20 20 N 1.34785 * 119.99907 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99600 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00226 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99811 * 180.02562 * 21 20 18 24 24 N 1.31403 * 120.00278 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99784 * 359.97438 * 23 21 20 26 26 H 1.48492 * 109.47035 * 90.00201 * 25 23 21 27 27 H 1.48499 * 109.46875 * 210.00361 * 25 23 21 28 28 H 1.48507 * 109.47079 * 330.00156 * 25 23 21 29 29 H 1.09004 * 109.46778 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46787 * 299.99396 * 1 2 3 31 31 H 1.08998 * 109.46749 * 59.99596 * 1 2 3 32 32 H 1.08999 * 109.47222 * 55.00279 * 4 2 1 33 33 H 1.09006 * 109.47403 * 295.00020 * 4 2 1 34 34 H 0.97009 * 120.00057 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.64710 * 286.32875 * 10 8 6 36 36 H 1.08996 * 109.64297 * 46.75594 * 10 8 6 37 37 H 1.09006 * 110.31598 * 90.99616 * 11 10 8 38 38 H 1.08998 * 110.31893 * 213.08364 * 11 10 8 39 39 H 1.09004 * 110.79211 * 316.54041 * 15 8 6 40 40 H 1.08998 * 110.79114 * 80.00668 * 15 8 6 41 41 H 1.00903 * 110.99686 * 321.04212 * 16 2 1 42 42 H 1.09005 * 109.47104 * 300.00274 * 17 16 2 43 43 H 1.09005 * 109.47233 * 59.99693 * 17 16 2 44 44 H 0.96993 * 119.99884 * 359.97438 * 20 18 17 45 45 H 0.97005 * 120.00338 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1910 7 8 3.5701 -1.8834 3.1398 8 6 5.6751 -1.5369 2.1304 9 1 6.1188 -0.5431 2.0710 10 6 6.2007 -2.2753 3.3739 11 6 7.6705 -2.6709 3.1295 12 16 7.8181 -2.8575 1.3158 13 8 8.7124 -1.8747 0.8125 14 8 8.0207 -4.2277 0.9984 15 6 6.0972 -2.3812 0.9004 16 7 2.0197 -0.6923 -1.1995 17 6 2.0825 0.2227 -2.3469 18 6 2.5874 -0.5216 -3.5560 19 8 2.8678 -1.6985 -3.4704 20 7 2.7283 0.1208 -4.7325 21 6 3.1881 -0.5562 -5.8324 22 1 3.4378 -1.6041 -5.7560 23 6 3.3339 0.1061 -7.0452 24 7 3.7751 -0.5426 -8.0993 25 14 2.9026 1.9190 -7.1770 26 1 4.1032 2.7370 -6.8696 27 1 2.4393 2.2185 -8.5558 28 1 1.8224 2.2424 -6.2106 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6055 -1.7198 1.2950 33 1 1.7517 -0.1584 2.1370 34 1 3.9825 -0.4621 0.4318 35 1 6.1370 -1.6207 4.2431 36 1 5.6057 -3.1721 3.5463 37 1 8.3379 -1.8856 3.4847 38 1 7.8968 -3.6133 3.6282 39 1 5.4650 -3.2636 0.8014 40 1 6.0702 -1.7806 -0.0088 41 1 1.4496 -1.4978 -1.4102 42 1 1.0871 0.6165 -2.5525 43 1 2.7589 1.0464 -2.1182 44 1 2.5044 1.0621 -4.8010 45 1 3.8765 -0.0803 -8.9460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731603241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:03:00 Heat of formation + Delta-G solvation = -175.343336 kcal Electronic energy + Delta-G solvation = -28546.731588 eV Core-core repulsion = 24304.059113 eV Total energy + Delta-G solvation = -4242.672475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.02056 -40.29620 -38.28028 -38.10455 -37.13544 -36.67094 -35.99565 -35.03848 -33.73391 -32.08922 -30.96811 -28.07500 -27.66854 -26.36393 -25.41235 -23.21322 -21.97704 -21.27008 -20.88893 -20.28383 -19.81864 -18.57841 -17.94347 -17.65908 -17.24006 -17.07712 -16.81634 -16.59449 -16.39993 -16.34387 -15.85482 -15.44060 -15.21017 -14.98093 -14.87104 -14.65196 -14.49075 -14.18367 -13.78779 -13.63103 -13.41363 -13.33538 -13.26341 -13.17033 -13.10954 -13.03204 -12.88322 -12.74843 -12.48135 -12.39740 -12.12364 -11.97825 -11.88872 -11.86000 -11.49243 -11.34742 -10.78366 -10.41159 -10.23045 -9.97421 -9.34339 -8.39987 -6.00924 -0.94188 1.30519 1.37088 1.45507 1.45902 1.70749 1.99302 2.21764 2.24205 2.66975 2.73414 3.03022 3.16925 3.36587 3.42784 3.51821 3.66102 3.86319 3.88464 4.01094 4.07294 4.16317 4.24642 4.35787 4.48014 4.48141 4.59579 4.66044 4.68875 4.79752 4.86241 4.90806 4.95873 5.02311 5.12042 5.28482 5.52500 5.54422 5.92290 6.05626 6.34969 6.60810 6.61720 6.90582 7.25919 7.42546 7.99762 8.77784 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009806 B = 0.002827 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.595743 B = 9901.233690 C =12121.101086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.076 3.924 3 H 0.106 0.894 4 C 0.133 3.867 5 N -0.705 5.705 6 C 0.525 3.475 7 O -0.577 6.577 8 C -0.109 4.109 9 H 0.152 0.848 10 C -0.097 4.097 11 C -0.559 4.559 12 S 2.393 3.607 13 O -0.972 6.972 14 O -0.985 6.985 15 C -0.581 4.581 16 N -0.677 5.677 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.966 3.034 26 H -0.257 1.257 27 H -0.279 1.279 28 H -0.228 1.228 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.415 0.585 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.139 0.861 40 H 0.152 0.848 41 H 0.345 0.655 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.390 0.610 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 8.317 26.449 27.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.034 4.034 3 H 0.124 0.876 4 C 0.008 3.992 5 N -0.355 5.355 6 C 0.311 3.689 7 O -0.458 6.458 8 C -0.131 4.131 9 H 0.169 0.831 10 C -0.136 4.136 11 C -0.692 4.692 12 S 2.581 3.419 13 O -0.969 6.969 14 O -0.982 6.982 15 C -0.711 4.711 16 N -0.309 5.309 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.234 5.234 21 C -0.457 4.457 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.578 5.578 25 Si 0.786 3.214 26 H -0.182 1.182 27 H -0.204 1.204 28 H -0.151 1.151 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.251 0.749 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.094 0.906 43 H 0.139 0.861 44 H 0.225 0.775 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.290 6.996 26.496 27.406 hybrid contribution -1.456 0.683 -1.278 2.054 sum -1.166 7.679 25.218 26.387 Atomic orbital electron populations 1.22394 0.95043 1.02667 1.03586 1.21890 0.94260 0.98710 0.88496 0.87554 1.21392 0.79775 1.00496 0.97519 1.45837 1.08123 1.58401 1.23145 1.20319 0.89570 0.77101 0.81932 1.90697 1.70795 1.49365 1.34925 1.22118 0.93915 1.03393 0.93690 0.83076 1.21780 0.91013 1.02955 0.97854 1.30332 1.04871 1.13833 1.20115 1.08785 0.78000 0.73823 0.81265 1.93581 1.61905 1.61877 1.79566 1.93565 1.85409 1.35024 1.84231 1.30676 1.23113 1.10874 1.06408 1.60164 1.58609 1.09151 1.03026 1.21687 1.01994 0.95405 0.87918 1.21084 0.82396 0.87966 0.84985 1.90564 1.55258 1.18730 1.85279 1.42038 1.60626 1.11862 1.08839 1.18988 1.42218 0.96028 0.88459 0.92832 1.26144 0.96466 1.05049 0.93904 1.69811 1.46443 1.39638 1.01867 0.85353 0.80240 0.76477 0.79333 1.18152 1.20432 1.15122 0.92722 0.89993 0.91785 0.93077 0.89989 0.74850 0.86535 0.89424 0.81541 0.82229 0.84251 0.83039 0.83604 0.90572 0.86107 0.77467 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.16 71.98 0.66 -1.56 16 2 C 0.08 1.10 2.75 44.91 0.12 1.23 16 3 H 0.11 1.16 7.80 -2.39 -0.02 1.14 16 4 C 0.13 2.19 5.37 86.38 0.46 2.65 16 5 N -0.70 -12.10 5.33 -463.07 -2.47 -14.56 16 6 C 0.53 9.79 7.15 87.66 0.63 10.41 16 7 O -0.58 -14.53 15.82 -3.03 -0.05 -14.58 16 8 C -0.11 -1.33 2.96 -10.54 -0.03 -1.37 16 9 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 10 C -0.10 -0.95 5.24 31.28 0.16 -0.78 16 11 C -0.56 -4.17 7.26 72.38 0.53 -3.64 16 12 S 2.39 40.75 6.10 -56.49 -0.34 40.40 16 13 O -0.97 -23.52 18.14 -127.47 -2.31 -25.84 16 14 O -0.99 -26.25 18.15 -127.47 -2.31 -28.56 16 15 C -0.58 -8.90 6.61 72.68 0.48 -8.42 16 16 N -0.68 -15.31 5.32 -495.59 -2.63 -17.95 16 17 C 0.06 1.52 5.96 85.56 0.51 2.03 16 18 C 0.45 18.37 7.82 87.65 0.69 19.05 16 19 O -0.61 -31.84 15.78 -3.07 -0.05 -31.89 16 20 N -0.59 -26.18 5.09 -306.98 -1.56 -27.74 16 21 C -0.33 -18.67 10.16 84.04 0.85 -17.82 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.65 16 23 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 24 N -0.94 -56.07 13.96 21.66 0.30 -55.77 16 25 Si 0.97 37.53 27.74 68.60 1.90 39.43 16 26 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 29 H 0.05 0.78 8.13 -2.38 -0.02 0.77 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.81 7.45 -2.39 -0.02 0.79 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.41 6.59 8.13 -92.70 -0.75 5.83 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 1.07 7.70 -2.39 -0.02 1.05 16 37 H 0.17 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.14 2.33 8.10 -2.39 -0.02 2.32 16 40 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.34 9.20 8.17 -89.69 -0.73 8.47 16 42 H 0.08 1.51 7.44 -2.38 -0.02 1.49 16 43 H 0.12 2.26 8.06 -2.38 -0.02 2.24 16 44 H 0.39 14.02 5.76 -92.71 -0.53 13.48 16 45 H 0.28 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -92.49 385.66 -5.03 -97.52 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -1.04 Total: 38.21 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 5.53 Total: 1.33 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -6.36 Total: -116.02 kcal Atomic # 8 Polarization: -96.15 SS G_CDS: -4.72 Total: -100.87 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 1.90 Total: 39.43 kcal Atomic # 16 Polarization: 40.75 SS G_CDS: -0.34 Total: 40.40 kcal Total: -92.49 -5.03 -97.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731603241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.823 kcal (2) G-P(sol) polarization free energy of solvation -92.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds