Wall clock time and date at job start Wed Apr 1 2020 07:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47120 * 2 1 4 4 C 1.52998 * 109.47111 * 240.00832 * 2 1 3 5 5 N 1.46499 * 109.47604 * 184.99897 * 4 2 1 6 6 C 1.34770 * 120.00605 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99741 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00277 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.64406 * 300.70572 * 8 6 5 10 10 C 1.53879 * 109.64429 * 61.13523 * 8 6 5 11 11 C 1.54735 * 106.77771 * 166.99523 * 10 8 6 12 12 S 1.83285 * 102.51771 * 317.51239 * 11 10 8 13 13 O 1.42095 * 109.35839 * 269.81881 * 12 11 10 14 14 O 1.42101 * 109.47337 * 136.65119 * 12 11 10 15 15 C 1.54163 * 109.64600 * 180.27420 * 8 6 5 16 16 N 1.46896 * 109.47372 * 120.00212 * 2 1 3 17 17 C 1.46895 * 111.00201 * 275.00100 * 16 2 1 18 18 C 1.50702 * 109.47137 * 179.97438 * 17 16 2 19 19 O 1.21294 * 119.99723 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00070 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00085 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00034 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99774 * 180.02562 * 21 20 18 24 24 N 1.31405 * 119.99915 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99665 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46954 * 89.99901 * 25 23 21 27 27 H 1.48499 * 109.46909 * 210.00077 * 25 23 21 28 28 H 1.48497 * 109.47088 * 329.99966 * 25 23 21 29 29 H 1.09006 * 109.47185 * 299.99024 * 1 2 3 30 30 H 1.08998 * 109.47511 * 59.99229 * 1 2 3 31 31 H 1.09003 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47434 * 64.99031 * 4 2 1 33 33 H 1.09001 * 109.46826 * 304.99536 * 4 2 1 34 34 H 0.97011 * 119.99518 * 359.97438 * 5 4 2 35 35 H 1.09004 * 110.02679 * 286.19622 * 10 8 6 36 36 H 1.09004 * 110.02622 * 47.60950 * 10 8 6 37 37 H 1.09006 * 110.80737 * 199.26379 * 11 10 8 38 38 H 1.09004 * 110.98349 * 75.84558 * 11 10 8 39 39 H 1.08998 * 110.32226 * 331.27302 * 15 8 6 40 40 H 1.09001 * 110.31978 * 93.47059 * 15 8 6 41 41 H 1.00902 * 110.99646 * 151.04626 * 16 2 1 42 42 H 1.09002 * 109.46988 * 299.99692 * 17 16 2 43 43 H 1.08995 * 109.47241 * 60.00348 * 17 16 2 44 44 H 0.97002 * 119.99972 * 0.02562 * 20 18 17 45 45 H 0.97005 * 119.99696 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1908 6 6 4.1730 -1.4289 -2.1909 7 8 3.5698 -1.8837 -3.1397 8 6 5.6749 -1.5365 -2.1309 9 1 6.1117 -0.5395 -2.0729 10 6 6.0859 -2.3542 -0.8939 11 6 7.5823 -2.7070 -1.0687 12 16 7.6759 -3.1755 -2.8382 13 8 7.4414 -4.5708 -2.9691 14 8 8.8343 -2.5948 -3.4213 15 6 6.1937 -2.2572 -3.3911 16 7 2.0197 -0.6925 1.1994 17 6 2.0825 0.2225 2.3468 18 6 2.5874 -0.5220 3.5559 19 8 2.8679 -1.6990 3.4699 20 7 2.7284 0.1201 4.7324 21 6 3.1873 -0.5573 5.8325 22 1 3.4362 -1.6054 5.7562 23 6 3.3320 0.1047 7.0456 24 7 3.0287 1.3799 7.1385 25 14 3.9579 -0.8181 8.5443 26 1 5.4390 -0.7249 8.6001 27 1 3.3775 -0.2187 9.7727 28 1 3.5548 -2.2443 8.4514 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7515 -0.1581 -2.1370 33 1 1.6054 -1.7196 -1.2953 34 1 3.9825 -0.4621 -0.4320 35 1 5.9484 -1.7595 0.0093 36 1 5.4917 -3.2661 -0.8348 37 1 7.8592 -3.5467 -0.4310 38 1 8.2138 -1.8426 -0.8634 39 1 5.4400 -2.9477 -3.7695 40 1 6.4625 -1.5314 -4.1586 41 1 2.9174 -1.1205 1.0285 42 1 2.7589 1.0461 2.1182 43 1 1.0872 0.6161 2.5526 44 1 2.5045 1.0615 4.8010 45 1 3.1294 1.8420 7.9855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731603245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:03:12 Heat of formation + Delta-G solvation = -142.493173 kcal Electronic energy + Delta-G solvation = -28419.207438 eV Core-core repulsion = 24177.959453 eV Total energy + Delta-G solvation = -4241.247985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -40.48902 -38.59347 -37.39234 -37.26657 -36.45688 -36.13634 -34.30559 -33.85491 -31.42734 -30.98432 -30.50427 -27.49812 -26.55771 -25.28117 -24.02880 -22.88370 -20.84608 -20.44081 -19.41643 -19.19152 -18.20452 -17.93080 -17.37550 -16.68181 -16.30998 -16.20649 -16.00854 -15.60836 -15.33503 -15.22265 -14.58173 -14.56121 -14.30992 -14.18726 -13.94942 -13.53942 -13.09275 -12.94496 -12.80356 -12.66647 -12.62252 -12.47008 -12.40433 -12.34648 -12.00468 -11.86511 -11.75922 -11.66673 -11.51601 -11.18607 -11.15401 -10.98594 -10.72395 -10.46339 -10.30368 -10.22380 -9.60060 -9.43908 -8.59287 -8.25389 -8.06170 -6.50827 -3.91979 -0.35419 2.08717 2.20055 2.76142 3.11056 3.15717 3.20946 3.26495 3.62335 3.77639 3.78905 3.92407 4.01485 4.12122 4.19120 4.29288 4.42533 4.49194 4.62730 4.85751 5.00489 5.04639 5.06406 5.14885 5.17483 5.25296 5.38350 5.39953 5.41576 5.56568 5.61534 5.66469 5.84568 5.87230 6.00026 6.13019 6.24463 7.01109 7.04923 7.43684 7.46591 7.79287 7.96423 8.50778 9.08494 9.43926 9.94624 10.66664 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.002501 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.041323 B =11191.153547 C =13412.783498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.117 3.883 5 N -0.727 5.727 6 C 0.527 3.473 7 O -0.530 6.530 8 C -0.105 4.105 9 H 0.121 0.879 10 C -0.119 4.119 11 C -0.584 4.584 12 S 2.390 3.610 13 O -0.932 6.932 14 O -0.939 6.939 15 C -0.581 4.581 16 N -0.663 5.663 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.583 6.583 20 N -0.561 5.561 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.401 0.599 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.346 0.654 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 1.118 -18.060 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.007 4.007 5 N -0.380 5.380 6 C 0.311 3.689 7 O -0.406 6.406 8 C -0.127 4.127 9 H 0.139 0.861 10 C -0.158 4.158 11 C -0.714 4.714 12 S 2.573 3.427 13 O -0.930 6.930 14 O -0.936 6.936 15 C -0.710 4.710 16 N -0.299 5.299 17 C -0.084 4.084 18 C 0.223 3.777 19 O -0.468 6.468 20 N -0.198 5.198 21 C -0.431 4.431 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.193 1.193 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.236 0.764 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.172 0.828 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.691 -0.700 -18.977 19.345 hybrid contribution 0.531 1.611 1.551 2.298 sum 4.222 0.910 -17.426 17.953 Atomic orbital electron populations 1.21739 0.93254 1.03054 1.01637 1.21819 0.97282 0.95906 0.88908 0.93278 1.21674 0.78827 1.02338 0.97857 1.46033 1.08437 1.59872 1.23643 1.20040 0.88896 0.77621 0.82294 1.90718 1.69711 1.47093 1.33074 1.21742 0.94768 1.02644 0.93571 0.86107 1.22217 0.92577 1.02633 0.98379 1.30570 1.03641 1.13030 1.24116 1.09093 0.77426 0.76535 0.79669 1.93642 1.85913 1.28276 1.85120 1.93619 1.45284 1.79440 1.75261 1.30540 1.20478 1.14344 1.05608 1.60111 1.34686 1.32355 1.02700 1.21765 1.01594 0.93738 0.91274 1.19768 0.85239 0.88217 0.84460 1.90531 1.55450 1.16043 1.84744 1.41870 1.57522 1.12417 1.07972 1.19700 1.40139 0.96438 0.86783 0.87883 1.25271 0.97521 0.95776 0.99275 1.69606 1.48370 1.08891 1.27302 0.85858 0.78770 0.79568 0.80116 1.20384 1.20875 1.19346 0.91898 0.92458 0.91449 0.90603 0.90016 0.76363 0.87181 0.88318 0.83726 0.83993 0.82773 0.83894 0.83287 0.93861 0.89349 0.77467 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.41 37.16 0.35 -0.98 16 2 C 0.07 0.71 2.81 -67.72 -0.19 0.52 16 3 H 0.05 0.44 7.80 -51.93 -0.40 0.04 16 4 C 0.12 1.10 5.31 -4.04 -0.02 1.08 16 5 N -0.73 -6.22 4.91 -60.30 -0.30 -6.52 16 6 C 0.53 4.99 7.13 -10.99 -0.08 4.91 16 7 O -0.53 -6.93 15.43 5.56 0.09 -6.84 16 8 C -0.10 -0.65 2.95 -90.71 -0.27 -0.92 16 9 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 10 C -0.12 -0.70 5.64 -25.36 -0.14 -0.85 16 11 C -0.58 -2.98 7.30 38.07 0.28 -2.70 16 12 S 2.39 17.85 6.10 -107.50 -0.66 17.20 16 13 O -0.93 -10.83 18.14 -57.73 -1.05 -11.88 16 14 O -0.94 -10.01 18.15 -57.73 -1.05 -11.06 16 15 C -0.58 -3.79 6.49 37.77 0.25 -3.54 16 16 N -0.66 -9.02 5.92 -108.00 -0.64 -9.66 16 17 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 18 C 0.44 9.48 7.82 -10.99 -0.09 9.39 16 19 O -0.58 -14.70 15.78 5.55 0.09 -14.61 16 20 N -0.56 -13.33 5.29 -10.96 -0.06 -13.39 16 21 C -0.30 -8.00 9.68 -14.93 -0.14 -8.15 16 22 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -23.54 13.05 55.50 0.72 -22.82 16 25 Si 0.93 20.26 29.55 -169.99 -5.02 15.24 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 29 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.40 2.83 7.30 -40.82 -0.30 2.54 16 35 H 0.11 0.56 8.13 -51.93 -0.42 0.14 16 36 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.15 1.22 6.98 -51.93 -0.36 0.85 16 40 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.35 4.67 6.41 -39.29 -0.25 4.42 16 42 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 43 H 0.09 1.28 7.44 -51.93 -0.39 0.89 16 44 H 0.39 8.90 7.90 -40.82 -0.32 8.57 16 45 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -37.87 385.83 -8.81 -46.67 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.57 Total: 11.85 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.18 Total: -0.01 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.27 Total: -52.38 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.92 Total: -44.39 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 17.85 SS G_CDS: -0.66 Total: 17.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.87 -8.81 -46.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731603245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.820 kcal (2) G-P(sol) polarization free energy of solvation -37.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds