Wall clock time and date at job start Wed Apr 1 2020 07:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47625 * 2 1 4 4 C 1.50698 * 109.47291 * 120.00373 * 2 1 3 5 5 O 1.21286 * 120.00527 * 99.99507 * 4 2 1 6 6 N 1.34778 * 119.99880 * 279.99886 * 4 2 1 7 7 C 1.46500 * 120.00248 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47601 * 175.58762 * 7 6 4 9 9 N 1.46899 * 115.55193 * 279.62014 * 8 7 6 10 10 C 1.46902 * 110.99451 * 294.62501 * 9 8 7 11 11 C 1.50710 * 109.46978 * 179.59886 * 10 9 8 12 12 O 1.21288 * 119.99564 * 359.97438 * 11 10 9 13 13 N 1.34768 * 119.99864 * 180.02562 * 11 10 9 14 14 C 1.37103 * 119.99827 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99783 * 359.97438 * 14 13 11 16 16 C 1.38951 * 119.99813 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00377 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99873 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46847 * 60.00085 * 18 16 14 20 20 H 1.48498 * 109.47498 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47004 * 300.00464 * 18 16 14 22 22 C 1.52998 * 117.49854 * 133.94082 * 8 7 6 23 23 C 1.52999 * 117.49756 * 65.28398 * 8 7 6 24 24 S 1.81404 * 109.46950 * 239.99762 * 2 1 3 25 25 C 1.81403 * 101.92012 * 60.00314 * 24 2 1 26 26 O 1.42101 * 108.58019 * 174.48804 * 24 2 1 27 27 O 1.42093 * 108.58117 * 305.51795 * 24 2 1 28 28 H 1.09000 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46749 * 59.99593 * 1 2 3 30 30 H 1.09003 * 109.46734 * 299.99953 * 1 2 3 31 31 H 0.97003 * 120.00011 * 359.97438 * 6 4 2 32 32 H 1.09003 * 109.47098 * 295.59293 * 7 6 4 33 33 H 1.09002 * 109.47000 * 55.58498 * 7 6 4 34 34 H 1.00897 * 111.00580 * 170.66864 * 9 8 7 35 35 H 1.09003 * 109.47409 * 299.58812 * 10 9 8 36 36 H 1.08992 * 109.47735 * 59.59643 * 10 9 8 37 37 H 0.97002 * 120.00150 * 359.97438 * 13 11 10 38 38 H 0.96996 * 119.99971 * 179.97438 * 17 16 14 39 39 H 1.08994 * 117.50404 * 0.02562 * 22 8 7 40 40 H 1.09005 * 117.49374 * 145.02599 * 22 8 7 41 41 H 1.08997 * 117.50101 * 214.98382 * 23 8 7 42 42 H 1.09006 * 117.50024 * 359.97438 * 23 8 7 43 43 H 1.09000 * 109.46991 * 59.99761 * 25 24 2 44 44 H 1.08995 * 109.47248 * 179.97438 * 25 24 2 45 45 H 1.09004 * 109.47299 * 300.00276 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4064 -1.8618 1.1557 6 7 2.0659 -0.0665 2.4139 7 6 2.5538 -0.7573 3.6102 8 6 2.5915 0.2221 4.7850 9 7 3.7572 1.1150 4.8283 10 6 4.9949 0.3546 5.0466 11 6 6.1675 1.3010 5.0753 12 8 5.9895 2.4916 4.9278 13 7 7.4138 0.8241 5.2637 14 6 8.4806 1.6850 5.2893 15 1 8.3221 2.7451 5.1579 16 6 9.7655 1.1933 5.4841 17 7 9.9584 -0.0967 5.6434 18 14 11.2190 2.3662 5.5182 19 1 11.0388 3.3458 6.6196 20 1 12.4703 1.5975 5.7385 21 1 11.3034 3.0876 4.2229 22 6 2.0163 -0.2540 6.1204 23 6 1.2565 0.7785 5.2840 24 16 2.1346 -0.8552 -1.4811 25 6 1.4229 0.1514 -2.8118 26 8 3.5496 -0.7332 -1.5285 27 8 1.5478 -2.1485 -1.5285 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 1.7671 0.8544 2.4736 32 1 1.8866 -1.5856 3.8489 33 1 3.5570 -1.1408 3.4245 34 1 3.6412 1.8273 5.5335 35 1 4.9328 -0.1756 5.9970 36 1 5.1275 -0.3638 4.2378 37 1 7.5561 -0.1282 5.3813 38 1 10.8554 -0.4399 5.7790 39 1 1.6113 -1.2651 6.1621 40 1 2.5026 0.0956 7.0311 41 1 1.2432 1.8070 5.6447 42 1 0.3513 0.4472 4.7750 43 1 1.7894 1.1746 -2.7291 44 1 1.7159 -0.2622 -3.7768 45 1 0.3360 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733247448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:11:01 Heat of formation + Delta-G solvation = -106.944516 kcal Electronic energy + Delta-G solvation = -28575.241443 eV Core-core repulsion = 24335.534963 eV Total energy + Delta-G solvation = -4239.706480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -40.26308 -38.92574 -37.80830 -37.21412 -36.19315 -34.58504 -34.03324 -33.75401 -32.65496 -31.18998 -29.87953 -27.55950 -26.57387 -25.05379 -24.09336 -22.68728 -20.95279 -20.03309 -19.26574 -18.95779 -17.91248 -17.85912 -17.39834 -16.59678 -16.29597 -16.04258 -15.90401 -15.54144 -15.17183 -15.13869 -14.50207 -14.27161 -14.09123 -13.99877 -13.67258 -13.64641 -13.58196 -13.27495 -13.07963 -12.66711 -12.53854 -12.41039 -12.23699 -12.21846 -12.15473 -11.77191 -11.69484 -11.49344 -11.32048 -11.10056 -10.94279 -10.88633 -10.46150 -10.43327 -10.22107 -10.17228 -9.50222 -9.28969 -8.47090 -8.13730 -7.96635 -6.41076 -3.82334 -0.41779 2.22113 2.39407 2.63739 3.20627 3.26720 3.30472 3.41310 3.61646 3.65312 3.88086 4.00191 4.11187 4.15389 4.23542 4.37903 4.38858 4.48775 4.56977 4.64564 4.75405 4.84943 5.01929 5.09009 5.22618 5.25238 5.37280 5.42819 5.45061 5.48120 5.63509 5.68936 5.81411 5.87857 5.96534 6.13884 6.24643 7.06057 7.15669 7.48956 7.55316 7.83501 8.05340 8.60345 9.17351 9.53579 10.04279 10.76450 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.002589 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.662964 B =10810.554846 C =12555.216066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.618 4.618 3 H 0.158 0.842 4 C 0.542 3.458 5 O -0.528 6.528 6 N -0.701 5.701 7 C 0.163 3.837 8 C 0.036 3.964 9 N -0.627 5.627 10 C 0.049 3.951 11 C 0.440 3.560 12 O -0.586 6.586 13 N -0.560 5.560 14 C -0.302 4.302 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.900 5.900 18 Si 0.932 3.068 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.204 4.204 23 C -0.166 4.166 24 S 2.449 3.551 25 C -0.663 4.663 26 O -0.922 6.922 27 O -0.914 6.914 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.408 0.592 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.355 0.645 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.393 0.607 38 H 0.273 0.727 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.073 -0.112 -9.756 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.726 4.726 3 H 0.176 0.824 4 C 0.325 3.675 5 O -0.405 6.405 6 N -0.351 5.351 7 C 0.039 3.961 8 C -0.058 4.058 9 N -0.258 5.258 10 C -0.083 4.083 11 C 0.225 3.775 12 O -0.471 6.471 13 N -0.197 5.197 14 C -0.431 4.431 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.541 5.541 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.244 4.244 23 C -0.204 4.204 24 S 2.625 3.375 25 C -0.812 4.812 26 O -0.919 6.919 27 O -0.911 6.911 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.243 0.757 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.175 0.825 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.226 0.774 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.088 -0.947 -10.583 25.415 hybrid contribution 0.205 1.100 1.231 1.664 sum -22.883 0.154 -9.352 24.721 Atomic orbital electron populations 1.21613 0.87691 1.05111 1.05034 1.30724 1.08817 1.15860 1.17246 0.82404 1.19083 0.78339 0.86322 0.83737 1.90887 1.47798 1.16553 1.85277 1.45682 1.64892 1.17029 1.07535 1.20847 1.01124 0.92520 0.81604 1.21852 0.91834 0.98014 0.94068 1.59864 0.98797 1.12230 1.54876 1.21707 0.89600 0.96199 1.00830 1.19719 0.83968 0.89084 0.84701 1.90515 1.84888 1.16329 1.55340 1.41847 1.04906 1.10283 1.62626 1.19645 0.84529 0.92277 1.46659 0.87964 1.25276 0.98969 0.96477 0.97142 1.69603 1.23488 1.12014 1.48970 0.85908 0.79678 0.79543 0.79021 1.19936 1.20942 1.19835 1.23645 1.05016 0.99915 0.95853 1.23162 0.94388 0.99547 1.03318 1.07495 0.76062 0.76646 0.77293 1.30412 1.14145 1.16869 1.19762 1.93634 1.26488 1.86562 1.85220 1.93587 1.79231 1.33315 1.84986 0.89710 0.90104 0.89783 0.75664 0.90554 0.89738 0.82472 0.93375 0.89369 0.77385 0.91735 0.88309 0.88285 0.88105 0.88167 0.85072 0.84837 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 8.93 37.16 0.33 -0.27 16 2 C -0.62 -4.71 3.11 -27.88 -0.09 -4.79 16 3 H 0.16 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.54 6.64 7.00 -10.99 -0.08 6.57 16 5 O -0.53 -8.81 15.65 -3.35 -0.05 -8.87 16 6 N -0.70 -7.45 5.52 -60.29 -0.33 -7.79 16 7 C 0.16 1.91 5.68 -4.04 -0.02 1.89 16 8 C 0.04 0.40 1.81 -131.61 -0.24 0.16 16 9 N -0.63 -9.36 6.29 -101.22 -0.64 -10.00 16 10 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 11 C 0.44 10.36 7.82 -10.98 -0.09 10.27 16 12 O -0.59 -15.71 15.79 5.55 0.09 -15.62 16 13 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 14 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 15 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 16 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 17 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 18 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.20 -1.92 10.07 -26.70 -0.27 -2.19 16 23 C -0.17 -1.40 9.89 -26.70 -0.26 -1.66 16 24 S 2.45 23.82 4.32 -107.50 -0.46 23.36 16 25 C -0.66 -2.66 10.17 101.05 1.03 -1.63 16 26 O -0.92 -13.51 18.10 -57.83 -1.05 -14.56 16 27 O -0.91 -12.20 17.40 -62.66 -1.09 -13.29 16 28 H 0.08 0.47 8.06 -51.93 -0.42 0.05 16 29 H 0.08 0.09 6.56 -51.93 -0.34 -0.25 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.41 3.39 8.41 -40.82 -0.34 3.05 16 32 H 0.08 0.81 7.95 -51.93 -0.41 0.40 16 33 H 0.08 1.19 6.52 -51.93 -0.34 0.86 16 34 H 0.35 5.41 8.32 -39.29 -0.33 5.09 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.51 6.62 -51.93 -0.34 1.16 16 37 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 44 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.13 0.19 6.87 -51.92 -0.36 -0.17 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -40.16 393.80 -8.43 -48.59 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -6.52 Total: 13.46 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 0.05 Total: 1.06 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.30 Total: -56.31 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -2.10 Total: -52.33 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 23.82 SS G_CDS: -0.46 Total: 23.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -40.16 -8.43 -48.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733247448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.358 kcal (2) G-P(sol) polarization free energy of solvation -40.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds