Wall clock time and date at job start Wed Apr 1 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.29530 * 2 1 4 4 C 1.54010 * 110.32818 * 122.13536 * 2 1 3 5 5 N 1.47482 * 107.08336 * 117.58309 * 4 2 1 6 6 C 1.34779 * 127.03129 * 205.48270 * 5 4 2 7 7 O 1.21613 * 119.99945 * 174.40081 * 6 5 4 8 8 C 1.47388 * 120.00228 * 354.40123 * 6 5 4 9 9 C 1.37367 * 128.56662 * 353.51332 * 8 6 5 10 10 O 1.33489 * 106.34129 * 179.97438 * 9 8 6 11 11 N 1.20656 * 113.16153 * 359.97438 * 10 9 8 12 12 C 1.30016 * 112.29918 * 359.72197 * 11 10 9 13 13 C 1.50694 * 127.33485 * 180.29926 * 12 11 10 14 14 F 1.39906 * 109.47228 * 270.14511 * 13 12 11 15 15 F 1.39906 * 109.47335 * 30.14186 * 13 12 11 16 16 F 1.39896 * 109.47362 * 150.14257 * 13 12 11 17 17 C 1.48117 * 105.93367 * 25.44813 * 5 4 2 18 18 C 1.54618 * 110.32658 * 237.75159 * 2 1 3 19 19 H 1.09005 * 110.73886 * 337.60265 * 18 2 1 20 20 C 1.53003 * 110.73885 * 100.92072 * 18 2 1 21 21 N 1.46497 * 109.47421 * 185.00068 * 20 18 2 22 22 C 1.36938 * 120.00222 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99907 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00357 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99643 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00370 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46983 * 59.99784 * 26 24 22 28 28 H 1.48496 * 109.47063 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47023 * 300.00016 * 26 24 22 30 30 H 1.09005 * 109.46878 * 299.31982 * 1 2 3 31 31 H 1.09005 * 109.47493 * 59.32019 * 1 2 3 32 32 H 1.09001 * 109.47460 * 179.32300 * 1 2 3 33 33 H 1.08990 * 109.91156 * 236.94640 * 4 2 1 34 34 H 1.09002 * 109.91052 * 358.22313 * 4 2 1 35 35 H 1.07996 * 126.82616 * 359.95424 * 9 8 6 36 36 H 1.08997 * 110.66123 * 79.15124 * 17 5 4 37 37 H 1.09005 * 110.66079 * 202.09620 * 17 5 4 38 38 H 1.09001 * 109.47283 * 305.00683 * 20 18 2 39 39 H 1.09009 * 109.46942 * 65.00093 * 20 18 2 40 40 H 0.97001 * 119.99679 * 0.02562 * 21 20 18 41 41 H 0.96997 * 119.99912 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2229 5 7 2.8276 -1.9217 0.7103 6 6 3.0612 -3.0873 1.3454 7 8 3.6223 -3.9954 0.7628 8 6 2.6366 -3.2614 2.7460 9 6 2.1062 -2.3275 3.6025 10 8 1.8831 -2.9602 4.7566 11 7 2.1954 -4.1253 4.7272 12 6 2.6695 -4.4799 3.5696 13 6 3.1530 -5.8471 3.1600 14 9 4.5189 -5.9620 3.4400 15 9 2.4475 -6.8237 3.8712 16 9 2.9415 -6.0250 1.7886 17 6 3.2835 -1.5376 -0.6456 18 6 2.0670 -0.7737 -1.2262 19 1 1.3173 -1.4700 -1.6020 20 6 2.5094 0.1937 -2.3260 21 7 2.9002 -0.5656 -3.5163 22 6 3.3352 0.0921 -4.6358 23 1 3.3906 1.1707 -4.6411 24 6 3.7050 -0.6274 -5.7638 25 7 3.6380 -1.9419 -5.7571 26 14 4.2977 0.2699 -7.2912 27 1 5.5076 1.0648 -6.9601 28 1 4.6295 -0.7187 -8.3485 29 1 3.2278 1.1768 -7.7790 30 1 -0.3633 0.5033 0.8961 31 1 -0.3634 0.5244 -0.8838 32 1 -0.3634 -1.0276 -0.0121 33 1 2.7180 -0.1227 1.8101 34 1 1.2333 -1.1157 1.8359 35 1 1.9092 -1.2881 3.3853 36 1 4.1552 -0.8859 -0.5880 37 1 3.5053 -2.4228 -1.2419 38 1 1.6850 0.8617 -2.5756 39 1 3.3584 0.7801 -1.9741 40 1 2.8508 -1.5344 -3.5113 41 1 3.8967 -2.4447 -6.5452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754818702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:36 Heat of formation + Delta-G solvation = -95.105514 kcal Electronic energy + Delta-G solvation = -31090.079288 eV Core-core repulsion = 26173.585494 eV Total energy + Delta-G solvation = -4916.493794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.37546 -47.95304 -47.79711 -45.80748 -40.30195 -38.07636 -34.90529 -34.73676 -33.37625 -32.54280 -31.46897 -29.28483 -27.70084 -26.93210 -25.98548 -24.53494 -23.12247 -22.49236 -21.32148 -20.59471 -20.09014 -19.01410 -18.96362 -18.53829 -18.23137 -17.80240 -17.03773 -16.52654 -16.20725 -15.80980 -14.99304 -14.76174 -14.68207 -14.42479 -14.37528 -14.28693 -14.22351 -13.96291 -13.89027 -13.67462 -13.36087 -13.11881 -13.04138 -12.79804 -12.51349 -12.46579 -12.20891 -12.03391 -11.42767 -11.28366 -11.19150 -10.89420 -10.69036 -10.59746 -10.51806 -10.41829 -10.27866 -10.06919 -9.70511 -8.92321 -8.84917 -6.96458 -5.77956 -3.08108 0.42394 0.69898 1.87349 2.13412 2.70854 2.81963 2.97739 3.29571 3.42843 3.47201 3.48880 3.96259 4.00485 4.02484 4.18073 4.30397 4.43208 4.52466 4.62084 4.66944 4.85279 5.05084 5.10350 5.36457 5.37211 5.52976 5.60446 5.64176 5.81922 5.89634 6.00517 6.05205 6.06984 6.30482 6.32505 6.62787 6.74415 7.22156 7.27868 7.66680 7.85058 8.39902 9.51171 10.07408 10.41331 11.44376 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.002673 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.036467 B =10470.716868 C =11844.125987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.092 0.908 4 C 0.088 3.912 5 N -0.611 5.611 6 C 0.601 3.399 7 O -0.504 6.504 8 C -0.197 4.197 9 C -0.007 4.007 10 O 0.132 5.868 11 N -0.296 5.296 12 C -0.038 4.038 13 C 0.558 3.442 14 F -0.162 7.162 15 F -0.168 7.168 16 F -0.138 7.138 17 C 0.117 3.883 18 C -0.102 4.102 19 H 0.086 0.914 20 C 0.165 3.835 21 N -0.733 5.733 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.385 0.615 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 1.253 24.100 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.110 0.890 4 C -0.035 4.035 5 N -0.345 5.345 6 C 0.387 3.613 7 O -0.380 6.380 8 C -0.205 4.205 9 C -0.088 4.088 10 O 0.059 5.941 11 N 0.008 4.992 12 C -0.202 4.202 13 C 0.503 3.497 14 F -0.144 7.144 15 F -0.149 7.149 16 F -0.119 7.119 17 C -0.004 4.004 18 C -0.122 4.122 19 H 0.105 0.895 20 C 0.037 3.963 21 N -0.377 5.377 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.260 0.740 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.218 0.782 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.001 0.047 24.836 25.551 hybrid contribution 0.541 0.302 -1.639 1.752 sum -5.459 0.349 23.197 23.834 Atomic orbital electron populations 1.21861 0.93902 1.02135 1.02207 1.22086 0.96526 0.99814 0.93367 0.88957 1.22599 0.95266 0.87713 0.97891 1.48593 1.53186 1.13841 1.18886 1.16244 0.80141 0.81833 0.83086 1.90945 1.41859 1.38977 1.66170 1.22237 1.08746 0.91638 0.97872 1.27114 0.97036 1.00774 0.83871 1.84631 1.60276 1.15477 1.33730 1.73727 1.11622 0.94854 1.18981 1.24682 1.06961 0.96567 0.91971 1.16537 0.75541 0.81436 0.76215 1.93266 1.31500 1.96158 1.93453 1.93250 1.78583 1.64549 1.78549 1.93393 1.94340 1.95301 1.28849 1.22701 0.97001 1.00542 0.80138 1.22605 0.96969 0.97912 0.94691 0.89527 1.20620 0.96633 0.92661 0.86347 1.42362 1.79241 1.05970 1.10170 1.19140 1.36379 0.91222 0.90840 0.91230 1.24755 1.02207 0.95482 0.98312 1.69649 1.54029 1.04531 1.29630 0.86275 0.78599 0.78361 0.82958 1.21251 1.21675 1.21277 0.92613 0.91550 0.92553 0.90707 0.90678 0.74030 0.90095 0.88713 0.95830 0.96049 0.78165 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.89 37.15 0.33 -0.83 16 2 C -0.10 -0.90 3.17 -89.25 -0.28 -1.18 16 3 H 0.09 0.76 7.85 -51.93 -0.41 0.35 16 4 C 0.09 0.66 4.97 -2.98 -0.01 0.64 16 5 N -0.61 -7.28 3.29 -171.04 -0.56 -7.85 16 6 C 0.60 8.29 7.83 -12.54 -0.10 8.19 16 7 O -0.50 -9.10 14.46 5.27 0.08 -9.03 16 8 C -0.20 -2.12 6.32 -102.89 -0.65 -2.77 16 9 C -0.01 -0.05 10.73 30.42 0.33 0.28 16 10 O 0.13 1.00 11.06 18.66 0.21 1.21 16 11 N -0.30 -3.13 11.98 34.78 0.42 -2.71 16 12 C -0.04 -0.46 6.86 -79.77 -0.55 -1.01 16 13 C 0.56 7.35 3.46 36.00 0.12 7.48 16 14 F -0.16 -2.19 17.30 2.25 0.04 -2.15 16 15 F -0.17 -2.09 17.28 2.25 0.04 -2.05 16 16 F -0.14 -2.10 14.45 2.25 0.03 -2.07 16 17 C 0.12 1.70 6.47 -2.13 -0.01 1.68 16 18 C -0.10 -1.41 2.62 -88.75 -0.23 -1.64 16 19 H 0.09 1.33 7.86 -51.93 -0.41 0.92 16 20 C 0.17 2.94 5.58 -4.04 -0.02 2.92 16 21 N -0.73 -17.63 5.52 -59.90 -0.33 -17.96 16 22 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 23 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 26 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 33 H 0.07 0.37 7.95 -51.93 -0.41 -0.04 16 34 H 0.08 0.38 5.47 -51.93 -0.28 0.09 16 35 H 0.24 0.45 5.30 -52.49 -0.28 0.17 16 36 H 0.08 1.16 7.94 -51.93 -0.41 0.74 16 37 H 0.09 1.68 7.81 -51.93 -0.41 1.28 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.38 7.99 -51.92 -0.42 -0.03 16 40 H 0.38 9.90 7.67 -40.82 -0.31 9.59 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -33.77 356.21 -4.91 -38.68 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.57 Total: 2.15 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.33 Total: 6.56 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.25 Total: -55.75 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.28 Total: -7.82 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.27 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.77 -4.91 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754818702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.424 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds