Wall clock time and date at job start Wed Apr 1 2020 06:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.29530 * 2 1 4 4 C 1.54010 * 110.32818 * 122.13536 * 2 1 3 5 5 N 1.47482 * 107.08336 * 117.58309 * 4 2 1 6 6 C 1.34779 * 127.03129 * 205.48270 * 5 4 2 7 7 O 1.21613 * 119.99945 * 174.40081 * 6 5 4 8 8 C 1.47388 * 120.00228 * 354.40123 * 6 5 4 9 9 C 1.37367 * 128.56662 * 353.51332 * 8 6 5 10 10 O 1.33489 * 106.34129 * 179.97438 * 9 8 6 11 11 N 1.20656 * 113.16153 * 359.97438 * 10 9 8 12 12 C 1.30016 * 112.29918 * 359.72197 * 11 10 9 13 13 C 1.50694 * 127.33485 * 180.29926 * 12 11 10 14 14 F 1.39906 * 109.47228 * 270.14511 * 13 12 11 15 15 F 1.39906 * 109.47335 * 30.14186 * 13 12 11 16 16 F 1.39896 * 109.47362 * 150.14257 * 13 12 11 17 17 C 1.48117 * 105.93367 * 25.44813 * 5 4 2 18 18 C 1.54618 * 110.32658 * 237.75159 * 2 1 3 19 19 H 1.09005 * 110.73886 * 337.60265 * 18 2 1 20 20 C 1.53003 * 110.73885 * 100.92072 * 18 2 1 21 21 N 1.46497 * 109.47421 * 185.00068 * 20 18 2 22 22 C 1.36938 * 120.00222 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99907 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00357 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99643 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00370 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46983 * 59.99784 * 26 24 22 28 28 H 1.48496 * 109.47063 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47023 * 300.00016 * 26 24 22 30 30 H 1.09005 * 109.46878 * 299.31982 * 1 2 3 31 31 H 1.09005 * 109.47493 * 59.32019 * 1 2 3 32 32 H 1.09001 * 109.47460 * 179.32300 * 1 2 3 33 33 H 1.08990 * 109.91156 * 236.94640 * 4 2 1 34 34 H 1.09002 * 109.91052 * 358.22313 * 4 2 1 35 35 H 1.07996 * 126.82616 * 359.95424 * 9 8 6 36 36 H 1.08997 * 110.66123 * 79.15124 * 17 5 4 37 37 H 1.09005 * 110.66079 * 202.09620 * 17 5 4 38 38 H 1.09001 * 109.47283 * 305.00683 * 20 18 2 39 39 H 1.09009 * 109.46942 * 65.00093 * 20 18 2 40 40 H 0.97001 * 119.99679 * 0.02562 * 21 20 18 41 41 H 0.96997 * 119.99912 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2229 5 7 2.8276 -1.9217 0.7103 6 6 3.0612 -3.0873 1.3454 7 8 3.6223 -3.9954 0.7628 8 6 2.6366 -3.2614 2.7460 9 6 2.1062 -2.3275 3.6025 10 8 1.8831 -2.9602 4.7566 11 7 2.1954 -4.1253 4.7272 12 6 2.6695 -4.4799 3.5696 13 6 3.1530 -5.8471 3.1600 14 9 4.5189 -5.9620 3.4400 15 9 2.4475 -6.8237 3.8712 16 9 2.9415 -6.0250 1.7886 17 6 3.2835 -1.5376 -0.6456 18 6 2.0670 -0.7737 -1.2262 19 1 1.3173 -1.4700 -1.6020 20 6 2.5094 0.1937 -2.3260 21 7 2.9002 -0.5656 -3.5163 22 6 3.3352 0.0921 -4.6358 23 1 3.3906 1.1707 -4.6411 24 6 3.7050 -0.6274 -5.7638 25 7 3.6380 -1.9419 -5.7571 26 14 4.2977 0.2699 -7.2912 27 1 5.5076 1.0648 -6.9601 28 1 4.6295 -0.7187 -8.3485 29 1 3.2278 1.1768 -7.7790 30 1 -0.3633 0.5033 0.8961 31 1 -0.3634 0.5244 -0.8838 32 1 -0.3634 -1.0276 -0.0121 33 1 2.7180 -0.1227 1.8101 34 1 1.2333 -1.1157 1.8359 35 1 1.9092 -1.2881 3.3853 36 1 4.1552 -0.8859 -0.5880 37 1 3.5053 -2.4228 -1.2419 38 1 1.6850 0.8617 -2.5756 39 1 3.3584 0.7801 -1.9741 40 1 2.8508 -1.5344 -3.5113 41 1 3.8967 -2.4447 -6.5452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754818702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:35 Heat of formation + Delta-G solvation = -118.827922 kcal Electronic energy + Delta-G solvation = -31091.107968 eV Core-core repulsion = 26173.585494 eV Total energy + Delta-G solvation = -4917.522475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.41520 -48.97555 -48.88553 -46.57950 -41.28232 -39.14183 -36.48803 -35.61644 -34.50900 -33.40285 -33.03829 -30.68254 -28.69740 -27.74462 -27.19915 -25.77410 -24.59944 -23.35976 -22.49743 -21.44585 -21.13849 -19.97424 -19.83024 -19.57756 -19.17061 -19.07240 -18.48969 -17.45961 -17.27023 -16.80279 -16.49145 -15.89353 -15.80144 -15.68886 -15.40129 -15.30894 -15.23606 -15.05440 -15.04504 -14.96206 -14.82301 -14.38135 -14.01275 -13.77213 -13.60698 -13.35481 -13.24461 -13.06942 -12.87859 -12.70363 -12.42413 -12.16516 -12.05492 -11.92810 -11.72826 -11.55572 -11.44544 -11.31304 -11.15346 -10.90375 -9.82728 -8.97698 -7.92977 -5.22135 -0.27443 -0.07578 0.99405 1.36123 1.47968 1.51103 1.57288 1.84463 1.93578 2.06901 2.41464 2.57526 2.99866 3.13152 3.18455 3.40678 3.47215 3.51120 3.55677 3.78174 3.85138 4.17760 4.23058 4.29103 4.42241 4.52357 4.57378 4.66323 4.82110 4.86294 4.91668 5.02992 5.11152 5.25670 5.30863 5.41508 5.51516 5.59362 6.28463 6.33713 6.57438 6.86775 7.34578 8.12354 8.32364 9.30438 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.002673 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.036467 B =10470.716868 C =11844.125987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.113 0.887 4 C 0.080 3.920 5 N -0.607 5.607 6 C 0.596 3.404 7 O -0.566 6.566 8 C -0.227 4.227 9 C 0.049 3.951 10 O 0.158 5.842 11 N -0.303 5.303 12 C -0.063 4.063 13 C 0.553 3.447 14 F -0.169 7.169 15 F -0.167 7.167 16 F -0.156 7.156 17 C 0.120 3.880 18 C -0.095 4.095 19 H 0.063 0.937 20 C 0.164 3.836 21 N -0.750 5.750 22 C -0.242 4.242 23 H 0.081 0.919 24 C -0.079 4.079 25 N -0.973 5.973 26 Si 0.973 3.027 27 H -0.276 1.276 28 H -0.300 1.300 29 H -0.275 1.275 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.297 0.703 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.370 0.630 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 5.011 26.962 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.131 0.869 4 C -0.041 4.041 5 N -0.339 5.339 6 C 0.385 3.615 7 O -0.445 6.445 8 C -0.235 4.235 9 C -0.031 4.031 10 O 0.081 5.919 11 N 0.003 4.997 12 C -0.225 4.225 13 C 0.498 3.502 14 F -0.151 7.151 15 F -0.148 7.148 16 F -0.137 7.137 17 C -0.002 4.002 18 C -0.115 4.115 19 H 0.081 0.919 20 C 0.038 3.962 21 N -0.392 5.392 22 C -0.374 4.374 23 H 0.099 0.901 24 C -0.271 4.271 25 N -0.624 5.624 26 Si 0.802 3.198 27 H -0.202 1.202 28 H -0.227 1.227 29 H -0.201 1.201 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.312 0.688 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.202 0.798 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.395 3.860 27.757 28.983 hybrid contribution 0.908 -0.773 -2.445 2.720 sum -6.487 3.087 25.312 26.312 Atomic orbital electron populations 1.21873 0.92846 1.01822 1.03423 1.22096 0.97314 1.00219 0.91054 0.86873 1.23063 0.96827 0.86411 0.97755 1.48573 1.52987 1.14648 1.17683 1.16650 0.79342 0.81401 0.84147 1.90914 1.44728 1.41079 1.67793 1.21876 1.12048 0.92686 0.96915 1.27894 0.92469 1.01271 0.81486 1.84638 1.58859 1.14444 1.33913 1.73748 1.11547 0.96078 1.18284 1.24509 1.08726 0.96201 0.93059 1.16733 0.75375 0.82620 0.75490 1.93239 1.32135 1.96309 1.93402 1.93240 1.78460 1.64804 1.78334 1.93353 1.94427 1.95524 1.30399 1.22431 0.97664 0.98594 0.81536 1.22420 0.96117 0.97278 0.95686 0.91873 1.20827 0.96925 0.93135 0.85348 1.42659 1.79243 1.05713 1.11587 1.19630 1.34322 0.91867 0.91586 0.90102 1.25602 1.03709 0.96187 1.01638 1.69833 1.56291 1.06190 1.30037 0.85214 0.78467 0.77047 0.79061 1.20243 1.22701 1.20131 0.88766 0.93079 0.93600 0.86190 0.87172 0.68818 0.89786 0.93603 0.95081 0.94933 0.79849 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.89 71.98 0.64 -1.07 16 2 C -0.09 -1.23 3.17 -9.90 -0.03 -1.26 16 3 H 0.11 1.23 7.85 -2.39 -0.02 1.21 16 4 C 0.08 0.76 4.97 86.53 0.43 1.18 16 5 N -0.61 -13.48 3.29 -813.31 -2.68 -16.15 16 6 C 0.60 16.33 7.83 86.65 0.68 17.01 16 7 O -0.57 -21.85 14.46 -4.07 -0.06 -21.91 16 8 C -0.23 -4.40 6.32 -18.74 -0.12 -4.52 16 9 C 0.05 0.35 10.73 67.61 0.73 1.07 16 10 O 0.16 1.68 11.06 77.03 0.85 2.53 16 11 N -0.30 -5.71 11.98 -44.78 -0.54 -6.24 16 12 C -0.06 -1.46 6.86 45.16 0.31 -1.15 16 13 C 0.55 15.22 3.46 71.23 0.25 15.46 16 14 F -0.17 -4.82 17.30 44.97 0.78 -4.04 16 15 F -0.17 -4.30 17.28 44.97 0.78 -3.52 16 16 F -0.16 -5.13 14.45 44.97 0.65 -4.48 16 17 C 0.12 3.55 6.47 86.73 0.56 4.11 16 18 C -0.10 -2.57 2.62 -9.58 -0.03 -2.60 16 19 H 0.06 2.01 7.86 -2.38 -0.02 1.99 16 20 C 0.16 5.72 5.58 86.38 0.48 6.20 16 21 N -0.75 -36.93 5.52 -343.44 -1.90 -38.82 16 22 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 23 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 24 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 25 N -0.97 -60.76 13.06 21.65 0.28 -60.47 16 26 Si 0.97 46.06 29.55 68.60 2.03 48.08 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 29 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 30 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.04 0.66 8.13 -2.39 -0.02 0.64 16 33 H 0.12 0.23 7.95 -2.39 -0.02 0.21 16 34 H 0.11 0.30 5.47 -2.39 -0.01 0.29 16 35 H 0.30 -1.44 5.30 -2.91 -0.02 -1.46 16 36 H 0.08 2.40 7.94 -2.39 -0.02 2.38 16 37 H 0.05 1.79 7.81 -2.38 -0.02 1.77 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.03 1.09 7.99 -2.38 -0.02 1.07 16 40 H 0.37 20.13 7.67 -92.71 -0.71 19.42 16 41 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -81.88 356.21 5.80 -76.08 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.40 Total: 11.01 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 5.20 Total: 17.93 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -4.83 Total: -121.69 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.79 Total: -19.37 kcal Atomic # 9 Polarization: -14.25 SS G_CDS: 2.21 Total: -12.04 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -81.88 5.80 -76.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754818702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.750 kcal (2) G-P(sol) polarization free energy of solvation -81.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds