Wall clock time and date at job start Wed Apr 1 2020 05:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38475 * 119.59558 * 2 1 4 4 N 1.31967 * 121.34574 * 0.56932 * 3 2 1 5 5 C 1.32716 * 121.46365 * 179.74886 * 4 3 2 6 6 C 1.48295 * 119.33822 * 179.70634 * 5 4 3 7 7 O 1.21401 * 119.99568 * 179.97438 * 6 5 4 8 8 O 1.34653 * 120.00018 * 359.97438 * 6 5 4 9 9 C 1.45195 * 117.00013 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47174 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47047 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.46894 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99561 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00175 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99725 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47250 * 59.99803 * 16 14 12 18 18 H 1.48500 * 109.47406 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47013 * 299.99877 * 16 14 12 20 20 C 1.39383 * 121.32021 * 359.68229 * 5 4 3 21 21 C 1.38607 * 119.32155 * 0.02562 * 20 5 4 22 22 C 1.39267 * 117.98548 * 0.02562 * 21 20 5 23 23 C 1.47506 * 121.83927 * 180.02562 * 22 21 20 24 24 O 1.21556 * 120.92034 * 359.95523 * 23 22 21 25 25 N 1.35134 * 118.16355 * 179.97438 * 23 22 21 26 26 C 1.46498 * 119.43504 * 180.02562 * 25 23 22 27 27 C 1.34213 * 121.12035 * 0.02562 * 25 23 22 28 28 O 1.21563 * 118.49868 * 179.97438 * 27 25 23 29 29 H 1.09002 * 109.47391 * 179.72901 * 1 2 3 30 30 H 1.09001 * 109.46813 * 59.72957 * 1 2 3 31 31 H 1.09004 * 109.47041 * 299.73084 * 1 2 3 32 32 H 1.08998 * 109.46835 * 299.99507 * 9 8 6 33 33 H 1.08995 * 109.47466 * 59.99320 * 9 8 6 34 34 H 1.08998 * 109.47115 * 299.99676 * 10 9 8 35 35 H 1.09007 * 109.47175 * 59.99968 * 10 9 8 36 36 H 1.09005 * 109.46802 * 299.99879 * 11 10 9 37 37 H 1.08995 * 109.47287 * 59.99847 * 11 10 9 38 38 H 0.97003 * 120.00003 * 180.02562 * 15 14 12 39 39 H 1.08002 * 120.33780 * 180.02562 * 20 5 4 40 40 H 1.07998 * 121.00700 * 179.97438 * 21 20 5 41 41 H 1.08999 * 109.47154 * 270.02093 * 26 25 23 42 42 H 1.08998 * 109.47408 * 30.02571 * 26 25 23 43 43 H 1.09002 * 109.46939 * 150.02581 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.2041 0.0000 4 7 1.5080 2.3576 0.0112 5 6 2.1611 3.5129 0.0162 6 6 1.3932 4.7816 0.0222 7 8 1.9785 5.8452 0.0272 8 8 0.0470 4.7538 0.0220 9 6 -0.6387 6.0336 0.0275 10 6 -2.1511 5.8019 0.0258 11 6 -2.8737 7.1506 0.0322 12 6 -4.3633 6.9223 0.0311 13 1 -4.7554 5.9161 0.0259 14 6 -5.2255 7.9983 0.0357 15 7 -4.7480 9.2236 0.0415 16 14 -7.0720 7.7154 0.0337 17 1 -7.4558 6.9429 1.2425 18 1 -7.7734 9.0243 0.0400 19 1 -7.4548 6.9540 -1.1825 20 6 3.5542 3.5577 0.0164 21 6 4.2714 2.3717 0.0108 22 6 3.5572 1.1761 0.0045 23 6 4.2340 -0.1346 -0.0012 24 8 5.4471 -0.2111 -0.0014 25 7 3.4680 -1.2479 -0.0065 26 6 4.1111 -2.5641 -0.0117 27 6 2.1283 -1.1681 -0.0072 28 8 1.4858 -2.2000 -0.0126 29 1 -0.3634 -1.0276 -0.0049 30 1 -0.3633 0.5180 -0.8876 31 1 -0.3633 0.5097 0.8924 32 1 -0.3575 6.5927 0.9199 33 1 -0.3573 6.6005 -0.8599 34 1 -2.4320 5.2431 -0.8669 35 1 -2.4328 5.2350 0.9131 36 1 -2.5926 7.7091 0.9251 37 1 -2.5920 7.7179 -0.8548 38 1 -5.3546 9.9805 0.0451 39 1 4.0695 4.5069 0.0209 40 1 5.3514 2.3746 0.0104 41 1 4.2717 -2.8860 -1.0406 42 1 5.0696 -2.5023 0.5035 43 1 3.4703 -3.2836 0.4982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030840072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:47 Heat of formation + Delta-G solvation = -92.232845 kcal Electronic energy + Delta-G solvation = -29349.505199 eV Core-core repulsion = 24974.992714 eV Total energy + Delta-G solvation = -4374.512485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.94538 -40.97002 -39.85807 -39.71149 -36.94230 -36.43779 -35.90910 -34.09778 -33.60257 -31.77660 -31.47492 -29.27873 -27.46851 -27.17674 -25.86206 -24.78502 -23.58250 -23.11103 -21.88706 -20.47645 -20.06067 -19.67763 -18.46820 -17.79053 -17.78377 -16.99742 -16.61383 -16.56542 -16.25046 -16.02760 -15.91608 -15.51436 -15.10048 -14.94342 -14.49712 -14.17518 -14.16325 -13.91044 -13.50610 -13.35480 -13.23604 -12.91675 -12.65663 -12.26219 -12.22926 -11.97091 -11.61917 -11.25393 -11.22750 -11.00746 -10.98807 -10.74250 -10.69582 -10.65053 -10.48865 -10.38023 -10.29690 -9.77737 -9.55420 -9.21047 -9.08981 -8.40881 -6.05879 -4.08987 -0.55192 0.34276 1.25110 1.36466 1.80788 2.11354 2.35466 2.54172 3.20962 3.21982 3.31052 3.35568 3.37947 3.48173 4.01143 4.25108 4.26536 4.40538 4.49866 4.66998 4.79066 4.83313 4.87393 4.99411 5.11033 5.17562 5.20583 5.30127 5.36666 5.48192 5.48783 5.49023 5.60573 5.74300 5.92566 6.25609 6.47939 6.48779 6.68941 6.74290 6.92709 6.95551 7.25577 7.56423 7.62137 7.67326 7.92029 8.32854 8.96917 9.55381 11.05432 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.002053 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.201790 B =13637.616702 C =15222.464354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.527 5.527 3 C 0.399 3.601 4 N -0.461 5.461 5 C 0.181 3.819 6 C 0.514 3.486 7 O -0.487 6.487 8 O -0.329 6.329 9 C 0.065 3.935 10 C -0.108 4.108 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.147 4.147 21 C 0.027 3.973 22 C -0.223 4.223 23 C 0.570 3.430 24 O -0.484 6.484 25 N -0.560 5.560 26 C 0.080 3.920 27 C 0.709 3.291 28 O -0.529 6.529 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.913 -20.745 -0.012 29.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.252 5.252 3 C 0.164 3.836 4 N -0.178 5.178 5 C 0.042 3.958 6 C 0.355 3.645 7 O -0.374 6.374 8 O -0.243 6.243 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.169 4.169 21 C 0.001 3.999 22 C -0.232 4.232 23 C 0.361 3.639 24 O -0.356 6.356 25 N -0.304 5.304 26 C -0.061 4.061 27 C 0.412 3.588 28 O -0.401 6.401 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.187 0.813 40 H 0.186 0.814 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 20.288 -20.946 -0.006 29.161 hybrid contribution -0.255 0.194 -0.030 0.322 sum 20.033 -20.752 -0.036 28.844 Atomic orbital electron populations 1.22115 0.73170 1.05431 1.04921 1.44554 1.09893 1.01647 1.69112 1.18263 0.86782 0.86562 0.92003 1.67134 1.39355 0.96042 1.15226 1.20321 0.90698 0.89485 0.95306 1.20583 0.82658 0.87244 0.74001 1.90882 1.71201 1.30492 1.44819 1.86666 1.17759 1.38165 1.81737 1.23689 0.93890 0.80684 1.02492 1.21776 0.88331 1.02274 1.02197 1.19054 0.94701 0.89801 0.97710 1.21121 0.90983 0.92751 1.51188 0.92451 1.25027 0.99095 0.95163 0.95176 1.69948 1.35067 0.97916 1.50394 0.86603 0.85081 0.77316 0.78682 1.20175 1.21280 1.20171 1.22118 0.92733 1.00771 1.01288 1.21502 1.01747 0.88710 0.87940 1.20450 0.92512 0.95429 1.14802 1.18178 0.86896 0.83360 0.75471 1.90846 1.12195 1.86530 1.46018 1.46069 1.05812 1.10559 1.67926 1.22004 0.99185 0.80541 1.04358 1.15359 0.81558 0.83711 0.78220 1.91021 1.64679 1.30868 1.53568 0.87892 0.89558 0.89530 0.91080 0.91086 0.91980 0.91981 0.96200 0.96200 0.92820 0.81344 0.81350 0.90455 0.88678 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.06 59.85 0.60 1.30 16 2 N -0.53 -5.09 3.05 -128.31 -0.39 -5.49 16 3 C 0.40 4.01 7.38 -155.24 -1.15 2.87 16 4 N -0.46 -5.25 9.39 -8.71 -0.08 -5.33 16 5 C 0.18 2.02 6.74 -82.92 -0.56 1.46 16 6 C 0.51 7.20 7.95 34.87 0.28 7.48 16 7 O -0.49 -7.51 16.07 -19.19 -0.31 -7.82 16 8 O -0.33 -5.19 10.02 -40.37 -0.40 -5.59 16 9 C 0.07 1.12 5.47 37.16 0.20 1.32 16 10 C -0.11 -2.14 5.53 -26.73 -0.15 -2.29 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 16 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.15 -1.19 9.61 -39.02 -0.38 -1.57 16 21 C 0.03 0.19 9.77 -39.06 -0.38 -0.19 16 22 C -0.22 -1.97 5.89 -104.74 -0.62 -2.59 16 23 C 0.57 5.22 7.65 -12.32 -0.09 5.13 16 24 O -0.48 -5.03 16.24 5.32 0.09 -4.94 16 25 N -0.56 -4.85 2.96 -129.53 -0.38 -5.23 16 26 C 0.08 0.48 10.08 59.85 0.60 1.08 16 27 C 0.71 7.02 8.10 -87.82 -0.71 6.31 16 28 O -0.53 -6.08 14.82 5.31 0.08 -6.00 16 29 H 0.10 0.81 6.78 -51.93 -0.35 0.45 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.17 1.10 7.61 -52.49 -0.40 0.70 16 40 H 0.17 0.78 7.85 -52.49 -0.41 0.36 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.49 7.42 -51.93 -0.39 0.11 16 43 H 0.10 0.54 7.31 -51.93 -0.38 0.17 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -33.06 376.77 -8.18 -41.24 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -5.27 Total: -4.70 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -2.90 Total: 7.58 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.12 Total: -41.68 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.55 Total: -24.35 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.06 -8.18 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030840072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.992 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds