Wall clock time and date at job start Wed Apr 1 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35901 * 116.99781 * 2 1 4 4 C 1.38749 * 120.05545 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94083 * 179.70962 * 4 3 2 6 6 C 1.38287 * 120.05574 * 0.54957 * 5 4 3 7 7 C 1.50700 * 119.94269 * 179.72847 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72150 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50697 * 109.46949 * 90.00203 * 11 10 8 13 13 H 1.08004 * 120.00186 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00081 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47135 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47061 * 119.99902 * 16 14 12 19 19 H 1.48503 * 109.47075 * 240.00004 * 16 14 12 20 20 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 21 21 C 1.52998 * 109.47320 * 89.99349 * 20 10 8 22 22 C 1.47196 * 109.47171 * 180.02562 * 21 20 10 23 23 N 9.37392 * 154.21820 * 206.41922 * 3 1 2 24 24 C 1.38240 * 120.10958 * 359.44924 * 6 5 4 25 25 C 1.38159 * 120.05910 * 0.27770 * 24 6 5 26 26 N 1.48007 * 120.03017 * 179.97438 * 25 24 6 27 27 O 1.21800 * 119.99854 * 359.97438 * 26 25 24 28 28 O 1.21797 * 119.99817 * 180.02562 * 26 25 24 29 29 H 1.08995 * 109.46903 * 60.00657 * 1 2 3 30 30 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47232 * 300.00662 * 1 2 3 32 32 H 1.07998 * 120.03283 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.96995 * 180.29152 * 5 4 3 34 34 H 1.09004 * 109.47210 * 149.72443 * 7 6 5 35 35 H 1.08994 * 109.47551 * 29.72095 * 7 6 5 36 36 H 1.09001 * 109.47567 * 210.00057 * 11 10 8 37 37 H 1.09005 * 109.47076 * 330.00563 * 11 10 8 38 38 H 0.96991 * 119.99957 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.46996 * 209.99677 * 20 10 8 40 40 H 1.09001 * 109.46578 * 329.99540 * 20 10 8 41 41 H 1.08997 * 109.47106 * 300.00561 * 21 20 10 42 42 H 1.09004 * 109.46895 * 60.00075 * 21 20 10 43 43 H 1.08011 * 119.96990 * 180.29892 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0066 6 6 3.3019 3.6758 0.0007 7 6 3.9860 5.0185 0.0011 8 6 4.2139 5.4666 -1.4196 9 8 3.8556 4.7650 -2.3417 10 7 4.8103 6.6499 -1.6655 11 6 5.0264 7.0883 -3.0466 12 6 3.8322 7.8790 -3.5153 13 1 2.9961 8.0393 -2.8507 14 6 3.8070 8.3978 -4.7925 15 7 4.8249 8.2022 -5.6020 16 14 2.3270 9.3785 -5.3732 17 1 1.3236 9.4540 -4.2810 18 1 2.7573 10.7499 -5.7463 19 1 1.7231 8.7107 -6.5542 20 6 5.2428 7.4978 -0.5518 21 6 6.6809 7.1428 -0.1689 22 6 7.1151 7.9943 0.9505 23 7 7.4502 8.6523 1.8141 24 6 4.0559 2.5171 0.0001 25 6 3.4311 1.2849 -0.0003 26 7 4.2391 0.0447 -0.0014 27 8 5.4553 0.1103 -0.0025 28 8 3.6877 -1.0413 -0.0022 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2128 2.3204 0.0014 33 1 1.3339 4.5113 0.0118 34 1 4.9440 4.9381 0.5148 35 1 3.3581 5.7461 0.5152 36 1 5.9177 7.7140 -3.0940 37 1 5.1596 6.2169 -3.6878 38 1 4.8073 8.5675 -6.5003 39 1 5.1945 8.5445 -0.8520 40 1 4.5881 7.3348 0.3044 41 1 6.7291 6.0961 0.1312 42 1 7.3356 7.3058 -1.0251 43 1 5.1345 2.5752 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067910231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:34 Heat of formation + Delta-G solvation = -41.988482 kcal Electronic energy + Delta-G solvation = -29841.320655 eV Core-core repulsion = 25468.986928 eV Total energy + Delta-G solvation = -4372.333726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.20839 -41.47253 -40.67445 -38.89941 -37.90928 -37.49841 -36.62201 -34.88404 -33.71614 -32.82011 -32.09455 -29.94464 -28.75717 -27.89793 -27.19129 -25.26634 -24.64159 -23.64744 -22.71085 -20.49449 -19.72781 -19.68871 -18.81539 -18.77278 -18.58507 -18.28982 -17.84503 -17.49393 -17.07738 -16.83621 -16.29775 -15.94635 -15.68025 -15.63599 -15.31596 -14.99810 -14.76412 -14.32580 -14.29011 -13.82014 -13.55108 -13.49586 -13.45462 -13.19275 -13.07413 -12.92608 -12.70747 -12.65750 -12.61761 -12.58542 -12.43296 -12.22341 -12.15980 -12.11938 -11.98036 -11.77067 -11.60914 -10.66917 -10.57669 -10.56870 -9.53490 -9.43247 -8.15957 -6.28030 -1.12127 -0.03075 0.34482 0.46483 1.40799 1.43301 1.53115 1.73455 1.89342 1.92973 1.95424 2.15552 2.39992 2.52993 3.15480 3.21756 3.28384 3.50045 3.63482 3.84940 3.91764 3.95148 4.15630 4.18099 4.25668 4.32554 4.35133 4.47681 4.58356 4.67185 4.70971 4.72159 4.87149 4.90341 5.11335 5.12068 5.20268 5.25922 5.37375 5.39742 5.64327 5.90599 5.99464 6.15219 6.60012 6.66117 6.78473 6.86276 7.37457 7.56103 8.90916 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008923 B = 0.003126 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.233623 B = 8956.274944 C =10787.449090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.309 6.309 3 C 0.185 3.815 4 C -0.204 4.204 5 C -0.006 4.006 6 C -0.100 4.100 7 C -0.093 4.093 8 C 0.503 3.497 9 O -0.587 6.587 10 N -0.596 5.596 11 C 0.259 3.741 12 C -0.534 4.534 13 H 0.060 0.940 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.957 3.043 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.289 1.289 20 C 0.112 3.888 21 C -0.041 4.041 22 C 0.247 3.753 23 N -0.492 5.492 24 C -0.016 4.016 25 C -0.107 4.107 26 N 0.041 4.959 27 O -0.202 6.202 28 O -0.170 6.170 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.185 0.815 33 H 0.174 0.826 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.031 0.969 37 H 0.000 1.000 38 H 0.263 0.737 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.116 0.884 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 -8.651 16.399 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.220 6.220 3 C 0.135 3.865 4 C -0.222 4.222 5 C -0.024 4.024 6 C -0.102 4.102 7 C -0.132 4.132 8 C 0.292 3.708 9 O -0.467 6.467 10 N -0.327 5.327 11 C 0.138 3.862 12 C -0.573 4.573 13 H 0.078 0.922 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.782 3.218 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.215 1.215 20 C -0.013 4.013 21 C -0.083 4.083 22 C -0.071 4.071 23 N -0.170 5.170 24 C -0.035 4.035 25 C -0.193 4.193 26 N 0.552 4.448 27 O -0.409 6.409 28 O -0.386 6.386 29 H 0.092 0.908 30 H 0.142 0.858 31 H 0.103 0.897 32 H 0.202 0.798 33 H 0.191 0.809 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.049 0.951 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.134 0.866 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.662 -7.616 17.033 20.571 hybrid contribution -0.334 -0.090 -1.525 1.563 sum -8.996 -7.707 15.508 19.515 Atomic orbital electron populations 1.23650 0.74830 1.06654 1.03431 1.86380 1.24852 1.24727 1.86021 1.18917 0.89041 0.87519 0.91028 1.21640 1.02419 0.89755 1.08434 1.21747 0.93857 0.99182 0.87589 1.19418 0.93955 0.93758 1.03057 1.20882 1.05349 0.93825 0.93157 1.21155 0.77154 0.80598 0.91922 1.90717 1.51909 1.55468 1.48560 1.48074 1.58116 1.18785 1.07710 1.18778 0.95731 0.93617 0.78114 1.21808 1.04186 1.32748 0.98575 0.92192 1.25748 0.98765 0.97626 0.96920 1.70041 1.32231 1.46743 1.07889 0.85524 0.79737 0.78273 0.78217 1.18577 1.20292 1.21518 1.21585 0.93582 0.96143 0.89949 1.19884 0.98139 0.98723 0.91507 1.29175 0.91969 0.92632 0.93281 1.81279 1.10569 1.11632 1.13535 1.20908 1.02470 0.88469 0.91650 1.20700 0.88853 0.84842 1.24863 1.43646 1.01170 1.03107 0.96888 1.94493 0.96531 1.94213 1.55657 1.94528 1.74280 1.16087 1.53683 0.90844 0.85850 0.89748 0.79775 0.80885 0.84157 0.83631 0.95093 0.98143 0.92763 0.89945 0.86409 0.84231 0.86644 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.31 -6.68 8.51 -71.28 -0.61 -7.28 16 3 C 0.18 4.14 6.67 22.51 0.15 4.29 16 4 C -0.20 -3.20 9.04 22.36 0.20 -3.00 16 5 C -0.01 -0.09 9.69 22.25 0.22 0.12 16 6 C -0.10 -1.93 4.37 -19.85 -0.09 -2.02 16 7 C -0.09 -1.48 4.38 29.10 0.13 -1.35 16 8 C 0.50 15.10 7.67 87.66 0.67 15.77 16 9 O -0.59 -24.89 15.61 -3.04 -0.05 -24.94 16 10 N -0.60 -18.46 2.46 -826.15 -2.03 -20.49 16 11 C 0.26 11.70 5.16 85.63 0.44 12.15 16 12 C -0.53 -27.09 9.39 25.60 0.24 -26.85 16 13 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 14 C 0.01 0.44 5.46 84.66 0.46 0.90 16 15 N -0.93 -52.72 13.29 21.45 0.28 -52.44 16 16 Si 0.96 41.77 29.54 68.60 2.03 43.79 16 17 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 18 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 20 C 0.11 2.17 5.17 86.38 0.45 2.62 16 21 C -0.04 -0.61 6.03 28.79 0.17 -0.44 16 22 C 0.25 4.68 15.43 89.44 1.38 6.06 16 23 N -0.49 -12.55 18.54 20.01 0.37 -12.18 16 24 C -0.02 -0.37 9.20 22.25 0.20 -0.17 16 25 C -0.11 -2.90 6.87 36.47 0.25 -2.65 16 26 N 0.04 1.32 4.45 -46.24 -0.21 1.11 16 27 O -0.20 -6.75 18.45 18.89 0.35 -6.40 16 28 O -0.17 -5.75 17.24 25.61 0.44 -5.31 16 29 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 30 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.46 7.66 -2.39 -0.02 0.44 16 32 H 0.19 1.50 6.30 -2.91 -0.02 1.48 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.14 1.23 7.16 -2.38 -0.02 1.21 16 35 H 0.15 1.26 7.34 -2.39 -0.02 1.24 16 36 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 37 H 0.00 0.02 7.42 -2.38 -0.02 0.01 16 38 H 0.26 14.23 8.31 -92.72 -0.77 13.46 16 39 H 0.08 1.87 8.07 -2.39 -0.02 1.85 16 40 H 0.12 1.36 6.43 -2.39 -0.02 1.34 16 41 H 0.14 1.22 7.24 -2.39 -0.02 1.21 16 42 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.16 3.43 7.61 -2.90 -0.02 3.40 16 Total: -1.00 -83.35 385.18 7.64 -75.71 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.06 Total: 1.79 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.99 Total: 6.63 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -1.58 Total: -83.99 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: 0.14 Total: -43.93 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -83.35 7.64 -75.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067910231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.721 kcal (2) G-P(sol) polarization free energy of solvation -83.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds