Wall clock time and date at job start Wed Apr 1 2020 05:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 116.99970 * 2 1 4 4 O 1.20820 * 119.99919 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99896 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47058 * 180.02562 * 5 3 2 7 7 C 1.37099 * 120.00091 * 270.00372 * 6 5 3 8 8 H 1.07999 * 120.00113 * 202.99795 * 7 6 5 9 9 C 1.38954 * 119.99982 * 22.99321 * 7 6 5 10 10 N 1.31406 * 119.99869 * 351.26244 * 9 7 6 11 11 Si 1.86799 * 119.99818 * 171.25765 * 9 7 6 12 12 H 1.48508 * 109.46785 * 90.00414 * 11 9 7 13 13 H 1.48502 * 109.47157 * 209.99847 * 11 9 7 14 14 H 1.48496 * 109.47423 * 330.00698 * 11 9 7 15 15 C 1.34770 * 119.99976 * 90.00033 * 6 5 3 16 16 O 1.21297 * 120.00188 * 5.01862 * 15 6 5 17 17 C 1.50701 * 120.00324 * 185.01851 * 15 6 5 18 18 N 1.46500 * 109.47644 * 174.87721 * 17 15 6 19 19 C 1.39279 * 125.81590 * 90.00113 * 18 17 15 20 20 C 1.38665 * 133.34012 * 0.02562 * 19 18 17 21 21 C 1.38105 * 119.85150 * 179.97438 * 20 19 18 22 22 C 1.38436 * 120.28612 * 0.02562 * 21 20 19 23 23 C 1.38113 * 120.28170 * 359.73355 * 22 21 20 24 24 C 1.38660 * 119.84903 * 0.48872 * 23 22 21 25 25 N 1.39285 * 133.33208 * 179.85177 * 24 23 22 26 26 C 1.46492 * 125.82091 * 359.67807 * 25 24 23 27 27 C 1.34638 * 125.81739 * 270.00261 * 18 17 15 28 28 O 1.21688 * 125.16257 * 0.02562 * 27 18 17 29 29 H 1.08996 * 109.47146 * 300.00104 * 1 2 3 30 30 H 1.09007 * 109.46850 * 59.99867 * 1 2 3 31 31 H 1.09002 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47219 * 60.00022 * 5 3 2 33 33 H 1.09000 * 109.46978 * 299.99999 * 5 3 2 34 34 H 0.97001 * 119.99842 * 185.00838 * 10 9 7 35 35 H 1.08999 * 109.47012 * 54.87609 * 17 15 6 36 36 H 1.09004 * 109.46779 * 294.88088 * 17 15 6 37 37 H 1.07996 * 120.07204 * 359.95868 * 20 19 18 38 38 H 1.08006 * 119.85590 * 180.02562 * 21 20 19 39 39 H 1.08003 * 119.86280 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.07469 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47607 * 89.99637 * 26 25 24 42 42 H 1.09000 * 109.47572 * 209.99939 * 26 25 24 43 43 H 1.08999 * 109.46985 * 329.99668 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1764 3.3374 -1.1860 8 1 4.8148 4.2078 -1.2227 9 6 3.5525 2.8842 -2.3419 10 7 2.9175 1.7338 -2.3378 11 14 3.6164 3.9103 -3.9015 12 1 4.8124 3.5300 -4.6955 13 1 2.3913 3.6670 -4.7046 14 1 3.6966 5.3494 -3.5443 15 6 4.1723 3.3257 1.1685 16 8 4.0891 2.7211 2.2167 17 6 4.4889 4.7990 1.1715 18 7 4.5289 5.2872 2.5522 19 6 5.6541 5.3217 3.3723 20 6 6.9772 4.9492 3.1888 21 6 7.8853 5.1095 4.2169 22 6 7.4803 5.6397 5.4299 23 6 6.1658 6.0181 5.6204 24 6 5.2457 5.8568 4.5956 25 7 3.8849 6.1309 4.4809 26 6 3.0346 6.7040 5.5271 27 6 3.4841 5.7789 3.2447 28 8 2.3496 5.8878 2.8182 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 2.5444 1.3828 -3.1615 35 1 3.7194 5.3371 0.6181 36 1 5.4577 4.9634 0.6998 37 1 7.2967 4.5346 2.2442 38 1 8.9159 4.8198 4.0739 39 1 8.1962 5.7616 6.2293 40 1 5.8535 6.4318 6.5679 41 1 3.0427 7.7910 5.4470 42 1 2.0148 6.3384 5.4073 43 1 3.4137 6.4090 6.5055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120657680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:29 Heat of formation + Delta-G solvation = -60.163501 kcal Electronic energy + Delta-G solvation = -31502.946224 eV Core-core repulsion = 27129.824370 eV Total energy + Delta-G solvation = -4373.121854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.21792 -39.45590 -38.37926 -38.04173 -35.71326 -35.60137 -35.01560 -34.55368 -31.66056 -30.42708 -30.24864 -28.70672 -27.91629 -26.56525 -25.75694 -24.45666 -22.33943 -22.24750 -20.91523 -20.01295 -19.33094 -17.77888 -17.68456 -17.07994 -16.60348 -16.39037 -15.90661 -15.78070 -15.46501 -15.17885 -14.87921 -14.42289 -14.37232 -14.15682 -14.02019 -13.81457 -13.56785 -13.42017 -12.80980 -12.75256 -12.50165 -12.44506 -12.41560 -12.09295 -11.58564 -11.47354 -11.25667 -11.20871 -11.04421 -10.92983 -10.64517 -10.54864 -10.40659 -10.33050 -10.14130 -9.80406 -9.57271 -9.03505 -8.82012 -8.19239 -8.04467 -7.52131 -6.52749 -4.17671 1.32794 1.50893 2.34975 3.02802 3.13656 3.17523 3.23410 3.40193 3.49566 3.73073 3.83794 3.93162 4.05183 4.57317 4.65903 4.82481 4.93487 4.99499 5.19907 5.29793 5.31994 5.40612 5.52948 5.57975 5.72261 5.73074 5.79868 5.81700 5.89760 5.95695 5.98744 6.19723 6.27248 6.46843 6.47003 6.54948 6.68895 6.75557 6.84174 6.98992 7.19647 7.44603 7.58056 7.58728 8.12899 8.51950 8.87436 9.12865 9.23625 9.62399 10.48266 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012270 B = 0.003762 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.504655 B = 7440.121314 C = 8176.392806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.488 3.512 4 O -0.510 6.510 5 C 0.156 3.844 6 N -0.427 5.427 7 C -0.336 4.336 8 H 0.103 0.897 9 C 0.047 3.953 10 N -0.879 5.879 11 Si 0.934 3.066 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.267 1.267 15 C 0.455 3.545 16 O -0.589 6.589 17 C 0.131 3.869 18 N -0.517 5.517 19 C 0.113 3.887 20 C -0.102 4.102 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.109 4.109 24 C 0.087 3.913 25 N -0.546 5.546 26 C 0.105 3.895 27 C 0.684 3.316 28 O -0.547 6.547 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.275 0.725 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.551 4.967 9.819 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.330 3.670 4 O -0.396 6.396 5 C 0.030 3.970 6 N -0.146 5.146 7 C -0.463 4.463 8 H 0.120 0.880 9 C -0.157 4.157 10 N -0.518 5.518 11 Si 0.760 3.240 12 H -0.202 1.202 13 H -0.207 1.207 14 H -0.192 1.192 15 C 0.242 3.758 16 O -0.473 6.473 17 C 0.007 3.993 18 N -0.236 5.236 19 C 0.011 3.989 20 C -0.123 4.123 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.130 4.130 24 C -0.015 4.015 25 N -0.269 5.269 26 C -0.037 4.037 27 C 0.387 3.613 28 O -0.422 6.422 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.130 4.981 9.813 12.597 hybrid contribution -0.518 0.374 -1.085 1.259 sum 5.612 5.355 8.728 11.676 Atomic orbital electron populations 1.22920 0.78892 1.01746 1.01537 1.86454 1.21481 1.35474 1.85679 1.23935 0.92345 0.80488 0.70237 1.90537 1.66652 1.36393 1.45978 1.20650 0.87054 0.85186 1.04063 1.43269 1.57786 1.08575 1.04997 1.19639 1.28251 1.13284 0.85110 0.87952 1.25311 0.93871 0.96224 1.00330 1.69605 1.35698 1.17789 1.28741 0.85814 0.77861 0.80061 0.80269 1.20163 1.20663 1.19193 1.20319 0.82781 0.88677 0.83974 1.90582 1.57374 1.67917 1.31475 1.21286 1.05146 0.94762 0.78133 1.44775 1.07289 1.57858 1.13652 1.18092 0.89747 1.01630 0.89425 1.20109 0.89415 1.02028 1.00764 1.20787 0.99175 1.00572 0.92727 1.20743 0.94751 1.00795 0.97742 1.19947 0.92088 1.04004 0.96996 1.18075 0.84261 1.03471 0.95644 1.44960 1.07667 1.60612 1.13641 1.21644 0.95080 0.98311 0.88664 1.15905 0.84511 0.80275 0.80591 1.91044 1.17349 1.61782 1.72049 0.93233 0.92774 0.89596 0.84257 0.90526 0.91374 0.86266 0.87460 0.85294 0.85297 0.85440 0.85753 0.91616 0.89665 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.56 101.05 1.07 1.87 16 2 O -0.37 -8.42 10.57 -39.27 -0.41 -8.84 16 3 C 0.49 12.57 5.92 36.01 0.21 12.78 16 4 O -0.51 -14.79 15.94 -18.75 -0.30 -15.09 16 5 C 0.16 3.81 5.29 -5.19 -0.03 3.79 16 6 N -0.43 -10.68 2.11 -116.09 -0.25 -10.93 16 7 C -0.34 -8.15 9.00 -14.93 -0.13 -8.28 16 8 H 0.10 2.23 6.72 -52.49 -0.35 1.88 16 9 C 0.05 1.14 5.41 -17.47 -0.09 1.05 16 10 N -0.88 -22.26 8.21 55.50 0.46 -21.80 16 11 Si 0.93 19.24 29.56 -169.99 -5.03 14.22 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 15 C 0.45 11.22 7.69 -10.99 -0.08 11.13 16 16 O -0.59 -15.98 15.99 5.54 0.09 -15.89 16 17 C 0.13 2.72 5.01 -5.19 -0.03 2.69 16 18 N -0.52 -10.44 2.28 -120.19 -0.27 -10.72 16 19 C 0.11 1.94 6.83 -83.80 -0.57 1.37 16 20 C -0.10 -1.44 10.02 -39.47 -0.40 -1.83 16 21 C -0.11 -1.25 10.03 -39.56 -0.40 -1.65 16 22 C -0.12 -1.23 10.03 -39.55 -0.40 -1.63 16 23 C -0.11 -1.27 10.02 -39.47 -0.40 -1.66 16 24 C 0.09 1.34 6.83 -83.80 -0.57 0.77 16 25 N -0.55 -9.17 3.18 -126.33 -0.40 -9.58 16 26 C 0.10 1.25 11.00 59.84 0.66 1.90 16 27 C 0.68 14.57 8.45 -87.16 -0.74 13.84 16 28 O -0.55 -13.57 17.48 5.20 0.09 -13.48 16 29 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.05 1.03 8.13 -51.93 -0.42 0.60 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.14 3.37 6.28 -51.93 -0.33 3.04 16 33 H 0.08 1.80 7.36 -51.93 -0.38 1.42 16 34 H 0.28 6.70 8.32 -40.82 -0.34 6.36 16 35 H 0.12 2.59 7.92 -51.93 -0.41 2.18 16 36 H 0.11 1.83 7.74 -51.93 -0.40 1.43 16 37 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 40 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.08 8.03 -51.93 -0.42 0.67 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -36.08 374.04 -7.51 -43.60 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.23 Total: 6.72 kcal Atomic # 6 Polarization: 38.04 SS G_CDS: -1.89 Total: 36.15 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.47 Total: -53.02 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.53 Total: -53.30 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.08 -7.51 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120657680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.564 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds