Wall clock time and date at job start Wed Apr 1 2020 04:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 109.46785 * 2 1 4 4 C 1.34825 * 117.00005 * 179.97438 * 3 2 1 5 5 O 1.21593 * 119.99995 * 0.02562 * 4 3 2 6 6 C 1.46747 * 120.00134 * 179.97438 * 4 3 2 7 7 C 1.41467 * 126.51299 * 359.97438 * 6 4 3 8 8 N 1.30316 * 108.17026 * 180.02562 * 7 6 4 9 9 N 1.39897 * 109.20633 * 359.97438 * 8 7 6 10 10 C 1.46495 * 125.74000 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47095 * 94.60877 * 10 9 8 12 12 H 1.07998 * 119.99605 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00053 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00266 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00235 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47078 * 59.99846 * 15 13 11 17 17 H 1.48501 * 109.47700 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47072 * 300.00364 * 15 13 11 19 19 C 1.34762 * 108.51513 * 0.02562 * 9 8 7 20 20 N 1.38488 * 126.43227 * 180.02562 * 19 9 8 21 21 C 1.34772 * 120.00074 * 78.18435 * 20 19 9 22 22 O 1.21270 * 120.00203 * 4.56584 * 21 20 19 23 23 C 1.50699 * 120.00206 * 184.56912 * 21 20 19 24 24 C 1.50696 * 109.47238 * 179.97438 * 23 21 20 25 25 C 1.41385 * 126.57862 * 89.99973 * 24 23 21 26 26 C 1.34507 * 106.84154 * 179.97438 * 25 24 23 27 27 O 1.34303 * 108.42156 * 0.02562 * 26 25 24 28 28 C 1.34300 * 109.47638 * 359.76610 * 27 26 25 29 29 H 1.09005 * 109.46967 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47417 * 300.00071 * 1 2 3 31 31 H 1.09006 * 109.47425 * 60.00541 * 1 2 3 32 32 H 1.09000 * 109.47417 * 239.99929 * 2 1 3 33 33 H 1.09001 * 109.46990 * 119.99273 * 2 1 3 34 34 H 1.08001 * 125.91586 * 0.03680 * 7 6 4 35 35 H 1.08998 * 109.47133 * 214.60936 * 10 9 8 36 36 H 1.09000 * 109.47477 * 334.60649 * 10 9 8 37 37 H 0.96997 * 120.00204 * 180.02562 * 14 13 11 38 38 H 0.97001 * 119.99804 * 258.17568 * 20 19 9 39 39 H 1.08999 * 109.46936 * 300.00133 * 23 21 20 40 40 H 1.09006 * 109.47042 * 59.99305 * 23 21 20 41 41 H 1.08002 * 126.57583 * 359.93348 * 25 24 23 42 42 H 1.08002 * 125.79357 * 179.97438 * 26 25 24 43 43 H 1.08000 * 125.79126 * 180.24235 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3506 1.5458 0.0005 5 8 4.0913 0.5815 0.0005 6 6 3.9114 2.9018 0.0000 7 6 3.1824 4.1142 -0.0016 8 7 4.0341 5.1005 -0.0021 9 7 5.3348 4.5854 -0.0004 10 6 6.5682 5.3759 -0.0009 11 6 7.0518 5.5532 1.4154 12 1 6.4961 5.1200 2.2339 13 6 8.2041 6.2675 1.6661 14 7 8.8810 6.7946 0.6693 15 14 8.8039 6.4867 3.4215 16 1 9.0688 5.1555 4.0240 17 1 10.0541 7.2881 3.4211 18 1 7.7651 7.1913 4.2152 19 6 5.2622 3.2397 0.0007 20 7 6.3304 2.3584 0.0031 21 6 7.0006 2.1150 1.1467 22 8 6.6182 2.6024 2.1892 23 6 8.2254 1.2370 1.1301 24 6 8.7832 1.1264 2.5256 25 6 8.4444 0.1533 3.4937 26 6 9.1738 0.4246 4.5908 27 8 9.9317 1.5047 4.3402 28 6 9.7025 1.9317 3.0877 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 2.1063 4.2064 -0.0020 35 1 7.3309 4.8588 -0.5831 36 1 6.3736 6.3528 -0.4433 37 1 9.6919 7.2969 0.8456 38 1 6.5962 1.9163 -0.8184 39 1 7.9566 0.2454 0.7661 40 1 8.9768 1.6741 0.4723 41 1 7.7354 -0.6528 3.3752 42 1 9.1529 -0.1312 5.5166 43 1 10.1746 2.7790 2.6129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121435723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:55 Heat of formation + Delta-G solvation = -29.018362 kcal Electronic energy + Delta-G solvation = -30951.090799 eV Core-core repulsion = 26579.319500 eV Total energy + Delta-G solvation = -4371.771300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30557 -41.13013 -39.62213 -38.86798 -36.17714 -34.48350 -33.78178 -33.70585 -31.97470 -31.46084 -30.35375 -29.14855 -27.67720 -27.19757 -24.26757 -23.10912 -22.27216 -21.74989 -21.36836 -20.38540 -19.92053 -19.47963 -17.72883 -17.35017 -16.98428 -16.80916 -16.46939 -16.27887 -15.77240 -15.54080 -14.96766 -14.78905 -14.47654 -14.25504 -13.84411 -13.62615 -13.60157 -13.43117 -13.07255 -12.82087 -12.62709 -12.56208 -12.30640 -12.23348 -11.86235 -11.82882 -11.59990 -11.35414 -11.09836 -10.93630 -10.73541 -10.40009 -10.30249 -9.96735 -9.89443 -9.70693 -9.40049 -9.19080 -8.70772 -8.65309 -8.28304 -8.15035 -6.29700 -4.34619 1.70200 2.03214 2.52284 2.70372 2.80430 3.01430 3.22950 3.25972 3.28172 3.37065 3.40572 3.58834 3.79270 4.31737 4.89368 4.90847 4.92278 4.98855 5.00385 5.09027 5.17733 5.23241 5.28443 5.35472 5.55568 5.56918 5.64686 5.70781 5.71300 5.87245 5.88547 6.08840 6.22996 6.38102 6.39422 6.68344 6.70178 6.74861 6.80881 7.04205 7.34824 7.51559 7.66874 7.74550 7.78843 8.13232 8.26166 8.62206 8.76459 9.32363 10.78590 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009073 B = 0.004475 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.449106 B = 6255.653603 C = 8564.128375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.357 6.357 4 C 0.552 3.448 5 O -0.528 6.528 6 C -0.306 4.306 7 C 0.087 3.913 8 N -0.281 5.281 9 N -0.303 5.303 10 C 0.250 3.750 11 C -0.527 4.527 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.896 5.896 15 Si 0.900 3.100 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.389 3.611 20 N -0.660 5.660 21 C 0.529 3.471 22 O -0.486 6.486 23 C -0.062 4.062 24 C -0.166 4.166 25 C -0.195 4.195 26 C -0.054 4.054 27 O -0.178 6.178 28 C -0.013 4.013 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.190 0.810 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.268 0.732 38 H 0.414 0.586 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.144 0.856 42 H 0.198 0.802 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 -14.854 -2.323 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.275 6.275 4 C 0.399 3.601 5 O -0.418 6.418 6 C -0.322 4.322 7 C -0.099 4.099 8 N -0.103 5.103 9 N -0.081 5.081 10 C 0.133 3.867 11 C -0.566 4.566 12 H 0.093 0.907 13 C -0.134 4.134 14 N -0.534 5.534 15 Si 0.727 3.273 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.159 3.841 20 N -0.315 5.315 21 C 0.315 3.685 22 O -0.356 6.356 23 C -0.102 4.102 24 C -0.167 4.167 25 C -0.214 4.214 26 C -0.121 4.121 27 O -0.073 6.073 28 C -0.081 4.081 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.206 0.794 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.253 0.747 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.162 0.838 42 H 0.215 0.785 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.780 -13.164 -1.360 14.071 hybrid contribution 0.221 -1.019 0.366 1.105 sum -4.559 -14.183 -0.994 14.931 Atomic orbital electron populations 1.21794 0.92967 1.02600 1.03500 1.22900 0.94960 0.80785 1.02270 1.86555 1.24344 1.31462 1.85091 1.19801 0.79880 0.88485 0.71964 1.90782 1.60258 1.42357 1.48397 1.18854 0.91460 0.91629 1.30266 1.23832 0.99881 0.88561 0.97647 1.77238 0.86979 1.22282 1.23792 1.49964 1.07709 1.03500 1.46947 1.19930 0.75365 0.91524 0.99881 1.21292 1.09346 1.34685 0.91246 0.90747 1.24838 0.95905 0.94685 0.97953 1.69917 1.17328 1.35006 1.31134 0.86485 0.77977 0.78842 0.84006 1.19318 1.21102 1.19961 1.17582 0.87118 0.82775 0.96611 1.42381 1.31979 1.44153 1.12993 1.20551 0.84058 0.81082 0.82830 1.90777 1.66204 1.48286 1.30299 1.19881 0.95127 1.00623 0.94553 1.19687 1.01138 0.98918 0.96982 1.21618 1.03554 1.02388 0.93887 1.23857 0.96835 0.90632 1.00766 1.84057 1.54587 1.38337 1.30335 1.23921 1.01363 1.00243 0.82542 0.90581 0.91499 0.91528 0.91556 0.91580 0.79354 0.93074 0.92071 0.92275 0.74733 0.87865 0.87681 0.83801 0.78538 0.78190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.85 16 2 C 0.07 0.74 6.20 37.16 0.23 0.97 16 3 O -0.36 -5.30 10.07 -40.83 -0.41 -5.71 16 4 C 0.55 9.70 7.94 34.17 0.27 9.97 16 5 O -0.53 -9.83 16.09 -19.34 -0.31 -10.14 16 6 C -0.31 -5.80 6.15 -104.86 -0.64 -6.45 16 7 C 0.09 1.57 11.86 -16.97 -0.20 1.37 16 8 N -0.28 -6.01 12.47 30.88 0.39 -5.62 16 9 N -0.30 -6.79 3.58 -61.13 -0.22 -7.01 16 10 C 0.25 6.16 6.08 -5.20 -0.03 6.12 16 11 C -0.53 -14.37 8.88 -34.44 -0.31 -14.67 16 12 H 0.07 2.21 7.09 -52.49 -0.37 1.84 16 13 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 14 N -0.90 -24.51 13.29 55.43 0.74 -23.78 16 15 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.39 7.91 6.48 -153.42 -0.99 6.91 16 20 N -0.66 -11.69 4.52 -11.08 -0.05 -11.74 16 21 C 0.53 10.06 7.78 -10.99 -0.09 9.97 16 22 O -0.49 -11.64 14.77 5.57 0.08 -11.56 16 23 C -0.06 -0.89 6.22 -29.04 -0.18 -1.07 16 24 C -0.17 -2.67 4.66 -104.74 -0.49 -3.15 16 25 C -0.20 -2.88 10.87 -39.70 -0.43 -3.31 16 26 C -0.05 -0.74 12.09 29.41 0.36 -0.39 16 27 O -0.18 -2.91 10.65 5.72 0.06 -2.85 16 28 C -0.01 -0.21 12.01 29.42 0.35 0.14 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.19 2.60 8.06 -52.49 -0.42 2.18 16 35 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.41 5.73 8.82 -40.82 -0.36 5.37 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.20 3.13 8.06 -52.49 -0.42 2.71 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -34.95 388.96 -6.12 -41.07 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.36 Total: 7.48 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.87 Total: 7.34 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.85 Total: -48.14 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.58 Total: -30.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.95 -6.12 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121435723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.052 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds