Wall clock time and date at job start Wed Apr 1 2020 04:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 109.46785 * 2 1 4 4 C 1.34825 * 117.00005 * 179.97438 * 3 2 1 5 5 O 1.21593 * 119.99995 * 0.02562 * 4 3 2 6 6 C 1.46747 * 120.00134 * 179.97438 * 4 3 2 7 7 C 1.41467 * 126.51299 * 359.97438 * 6 4 3 8 8 N 1.30316 * 108.17026 * 180.02562 * 7 6 4 9 9 N 1.39897 * 109.20633 * 359.97438 * 8 7 6 10 10 C 1.46495 * 125.74000 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47095 * 94.60877 * 10 9 8 12 12 H 1.07998 * 119.99605 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00053 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00266 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00235 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47078 * 59.99846 * 15 13 11 17 17 H 1.48501 * 109.47700 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47072 * 300.00364 * 15 13 11 19 19 C 1.34762 * 108.51513 * 0.02562 * 9 8 7 20 20 N 1.38488 * 126.43227 * 180.02562 * 19 9 8 21 21 C 1.34772 * 120.00074 * 78.18435 * 20 19 9 22 22 O 1.21270 * 120.00203 * 4.56584 * 21 20 19 23 23 C 1.50699 * 120.00206 * 184.56912 * 21 20 19 24 24 C 1.50696 * 109.47238 * 179.97438 * 23 21 20 25 25 C 1.41385 * 126.57862 * 89.99973 * 24 23 21 26 26 C 1.34507 * 106.84154 * 179.97438 * 25 24 23 27 27 O 1.34303 * 108.42156 * 0.02562 * 26 25 24 28 28 C 1.34300 * 109.47638 * 359.76610 * 27 26 25 29 29 H 1.09005 * 109.46967 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47417 * 300.00071 * 1 2 3 31 31 H 1.09006 * 109.47425 * 60.00541 * 1 2 3 32 32 H 1.09000 * 109.47417 * 239.99929 * 2 1 3 33 33 H 1.09001 * 109.46990 * 119.99273 * 2 1 3 34 34 H 1.08001 * 125.91586 * 0.03680 * 7 6 4 35 35 H 1.08998 * 109.47133 * 214.60936 * 10 9 8 36 36 H 1.09000 * 109.47477 * 334.60649 * 10 9 8 37 37 H 0.96997 * 120.00204 * 180.02562 * 14 13 11 38 38 H 0.97001 * 119.99804 * 258.17568 * 20 19 9 39 39 H 1.08999 * 109.46936 * 300.00133 * 23 21 20 40 40 H 1.09006 * 109.47042 * 59.99305 * 23 21 20 41 41 H 1.08002 * 126.57583 * 359.93348 * 25 24 23 42 42 H 1.08002 * 125.79357 * 179.97438 * 26 25 24 43 43 H 1.08000 * 125.79126 * 180.24235 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3506 1.5458 0.0005 5 8 4.0913 0.5815 0.0005 6 6 3.9114 2.9018 0.0000 7 6 3.1824 4.1142 -0.0016 8 7 4.0341 5.1005 -0.0021 9 7 5.3348 4.5854 -0.0004 10 6 6.5682 5.3759 -0.0009 11 6 7.0518 5.5532 1.4154 12 1 6.4961 5.1200 2.2339 13 6 8.2041 6.2675 1.6661 14 7 8.8810 6.7946 0.6693 15 14 8.8039 6.4867 3.4215 16 1 9.0688 5.1555 4.0240 17 1 10.0541 7.2881 3.4211 18 1 7.7651 7.1913 4.2152 19 6 5.2622 3.2397 0.0007 20 7 6.3304 2.3584 0.0031 21 6 7.0006 2.1150 1.1467 22 8 6.6182 2.6024 2.1892 23 6 8.2254 1.2370 1.1301 24 6 8.7832 1.1264 2.5256 25 6 8.4444 0.1533 3.4937 26 6 9.1738 0.4246 4.5908 27 8 9.9317 1.5047 4.3402 28 6 9.7025 1.9317 3.0877 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 2.1063 4.2064 -0.0020 35 1 7.3309 4.8588 -0.5831 36 1 6.3736 6.3528 -0.4433 37 1 9.6919 7.2969 0.8456 38 1 6.5962 1.9163 -0.8184 39 1 7.9566 0.2454 0.7661 40 1 8.9768 1.6741 0.4723 41 1 7.7354 -0.6528 3.3752 42 1 9.1529 -0.1312 5.5166 43 1 10.1746 2.7790 2.6129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121435723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:54 Heat of formation + Delta-G solvation = -51.086605 kcal Electronic energy + Delta-G solvation = -30952.047750 eV Core-core repulsion = 26579.319500 eV Total energy + Delta-G solvation = -4372.728250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.47418 -42.66065 -40.92621 -40.38334 -37.44667 -36.04219 -35.68605 -34.95974 -33.63389 -32.51755 -31.56847 -30.53853 -29.35177 -28.64815 -25.85697 -24.59473 -23.47405 -23.14756 -22.49289 -21.80828 -21.15515 -21.02753 -19.20402 -18.90885 -18.56260 -18.12621 -18.06011 -17.41820 -17.17170 -16.77985 -16.72403 -16.33509 -15.79906 -15.66610 -15.35842 -15.05850 -14.89829 -14.76420 -14.40487 -14.16874 -13.95848 -13.75007 -13.67256 -13.51495 -13.41380 -13.08946 -12.83862 -12.80835 -12.52439 -12.46719 -12.29222 -12.26132 -11.89783 -11.42647 -11.37096 -11.23690 -10.83160 -10.76340 -10.56840 -10.34472 -9.74407 -9.44998 -8.38252 -6.48732 0.19178 0.84287 1.05620 1.23824 1.31118 1.31671 1.43056 1.58341 1.63284 1.90557 2.15352 2.25593 2.29803 2.39330 2.94406 3.62642 3.73044 3.90435 3.92026 3.98438 4.09461 4.13703 4.17398 4.22600 4.41448 4.49684 4.54222 4.57952 4.71776 4.76451 4.85299 4.96549 5.00415 5.06540 5.10560 5.20641 5.26456 5.46738 5.52181 5.55378 5.58424 5.73853 5.93944 6.18391 6.30767 6.57031 6.65311 6.87727 7.17166 7.22490 8.69619 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009073 B = 0.004475 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.449106 B = 6255.653603 C = 8564.128375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.556 3.444 5 O -0.540 6.540 6 C -0.312 4.312 7 C 0.105 3.895 8 N -0.316 5.316 9 N -0.327 5.327 10 C 0.268 3.732 11 C -0.533 4.533 12 H 0.045 0.955 13 C 0.038 3.962 14 N -0.912 5.912 15 Si 0.948 3.052 16 H -0.273 1.273 17 H -0.268 1.268 18 H -0.282 1.282 19 C 0.379 3.621 20 N -0.651 5.651 21 C 0.524 3.476 22 O -0.542 6.542 23 C -0.055 4.055 24 C -0.174 4.174 25 C -0.214 4.214 26 C -0.047 4.047 27 O -0.193 6.193 28 C -0.044 4.044 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.231 0.769 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.273 0.727 38 H 0.432 0.568 39 H 0.138 0.862 40 H 0.127 0.873 41 H 0.162 0.838 42 H 0.239 0.761 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 -16.822 -2.340 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 O -0.271 6.271 4 C 0.403 3.597 5 O -0.432 6.432 6 C -0.328 4.328 7 C -0.081 4.081 8 N -0.137 5.137 9 N -0.105 5.105 10 C 0.150 3.850 11 C -0.572 4.572 12 H 0.063 0.937 13 C -0.163 4.163 14 N -0.551 5.551 15 Si 0.773 3.227 16 H -0.198 1.198 17 H -0.192 1.192 18 H -0.208 1.208 19 C 0.150 3.850 20 N -0.308 5.308 21 C 0.313 3.687 22 O -0.416 6.416 23 C -0.094 4.094 24 C -0.176 4.176 25 C -0.233 4.233 26 C -0.113 4.113 27 O -0.089 6.089 28 C -0.112 4.112 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.273 0.727 39 H 0.156 0.844 40 H 0.145 0.855 41 H 0.180 0.820 42 H 0.255 0.745 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.760 -15.156 -1.431 16.277 hybrid contribution 0.368 -0.530 0.371 0.744 sum -5.392 -15.686 -1.060 16.621 Atomic orbital electron populations 1.21821 0.90197 1.04377 1.03747 1.23292 0.97064 0.78950 1.02465 1.86543 1.22407 1.33792 1.84391 1.19566 0.80846 0.87596 0.71728 1.90766 1.60917 1.42541 1.48991 1.19135 0.91118 0.92925 1.29631 1.24511 1.01283 0.87393 0.94949 1.77186 0.86983 1.23871 1.25668 1.49693 1.07476 1.04141 1.49227 1.19426 0.76482 0.90915 0.98178 1.21214 1.09483 1.34798 0.91688 0.93717 1.25361 0.95908 0.94374 1.00705 1.69955 1.17634 1.35200 1.32271 0.85765 0.77915 0.78490 0.80519 1.19834 1.19191 1.20784 1.17997 0.88538 0.82412 0.96035 1.42455 1.31252 1.43371 1.13709 1.21405 0.84612 0.80576 0.82094 1.90750 1.67855 1.50700 1.32259 1.20004 0.93372 1.01532 0.94541 1.20010 1.00683 0.99005 0.97902 1.21944 1.04426 1.02949 0.93979 1.24716 0.95206 0.89436 1.01952 1.84042 1.55365 1.39309 1.30231 1.24066 1.02781 1.01113 0.83195 0.88019 0.91555 0.90961 0.90904 0.91931 0.75258 0.93152 0.94173 0.91764 0.72666 0.84413 0.85470 0.82050 0.74519 0.78396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.29 71.98 0.74 -1.17 16 2 C 0.06 1.14 6.20 71.98 0.45 1.58 16 3 O -0.35 -9.77 10.07 -57.37 -0.58 -10.34 16 4 C 0.56 18.74 7.94 70.05 0.56 19.30 16 5 O -0.54 -19.39 16.09 19.53 0.31 -19.07 16 6 C -0.31 -11.62 6.15 -20.02 -0.12 -11.74 16 7 C 0.10 3.67 11.86 85.71 1.02 4.69 16 8 N -0.32 -13.61 12.47 -56.22 -0.70 -14.31 16 9 N -0.33 -14.99 3.58 -347.31 -1.24 -16.23 16 10 C 0.27 13.66 6.08 85.63 0.52 14.18 16 11 C -0.53 -29.97 8.88 25.60 0.23 -29.74 16 12 H 0.04 2.77 7.09 -2.91 -0.02 2.75 16 13 C 0.04 2.08 5.46 84.65 0.46 2.54 16 14 N -0.91 -50.31 13.29 21.45 0.28 -50.03 16 15 Si 0.95 45.12 29.54 68.60 2.03 47.15 16 16 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 19 C 0.38 15.49 6.48 132.54 0.86 16.35 16 20 N -0.65 -22.93 4.52 -307.36 -1.39 -24.32 16 21 C 0.52 19.93 7.78 87.66 0.68 20.61 16 22 O -0.54 -26.51 14.77 -3.00 -0.04 -26.56 16 23 C -0.06 -1.52 6.22 29.10 0.18 -1.34 16 24 C -0.17 -5.51 4.66 -19.94 -0.09 -5.60 16 25 C -0.21 -6.02 10.87 22.19 0.24 -5.78 16 26 C -0.05 -1.22 12.09 66.97 0.81 -0.41 16 27 O -0.19 -6.27 10.65 -2.46 -0.03 -6.30 16 28 C -0.04 -1.48 12.01 66.97 0.80 -0.68 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.23 5.75 8.06 -2.91 -0.02 5.73 16 35 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.43 11.58 8.82 -92.71 -0.82 10.76 16 39 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.13 2.93 8.14 -2.38 -0.02 2.91 16 41 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 42 H 0.24 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.20 6.43 8.06 -2.91 -0.02 6.41 16 Total: -1.00 -77.65 388.96 6.22 -71.43 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.24 Total: 25.77 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 7.33 Total: 22.81 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -3.05 Total: -104.88 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -0.33 Total: -62.28 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -77.65 6.22 -71.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121435723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.343 kcal (2) G-P(sol) polarization free energy of solvation -77.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds