Wall clock time and date at job start Wed Apr 1 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99851 * 2 1 4 4 C 1.53001 * 109.47133 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47030 * 65.00306 * 4 3 2 6 6 C 1.46495 * 120.00030 * 270.00478 * 5 4 3 7 7 C 1.50706 * 109.46862 * 269.99402 * 6 5 4 8 8 H 1.08005 * 120.00031 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00069 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99980 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00035 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47007 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46989 * 119.99990 * 11 9 7 14 14 H 1.48494 * 109.47187 * 240.00377 * 11 9 7 15 15 C 1.34782 * 119.99848 * 89.99520 * 5 4 3 16 16 O 1.21573 * 120.00139 * 0.02562 * 15 5 4 17 17 N 1.34775 * 119.99732 * 179.97438 * 15 5 4 18 18 C 1.39393 * 119.99936 * 185.09558 * 17 15 5 19 19 C 1.39043 * 119.69827 * 174.80915 * 18 17 15 20 20 C 1.38354 * 119.10365 * 180.29249 * 19 18 17 21 21 C 1.38850 * 118.49256 * 359.43978 * 20 19 18 22 22 C 1.38063 * 119.31019 * 0.27257 * 21 20 19 23 23 C 1.50706 * 119.57296 * 180.02562 * 22 21 20 24 24 F 1.39890 * 109.47315 * 89.99984 * 23 22 21 25 25 F 1.39901 * 109.46561 * 210.00013 * 23 22 21 26 26 F 1.39896 * 109.46921 * 329.99566 * 23 22 21 27 27 N 1.31943 * 120.85011 * 0.02562 * 22 21 20 28 28 H 1.08995 * 109.46908 * 299.99878 * 1 2 3 29 29 H 1.09000 * 109.47077 * 60.00003 * 1 2 3 30 30 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47085 * 60.00172 * 3 2 1 32 32 H 1.08997 * 109.47370 * 300.00591 * 3 2 1 33 33 H 1.09002 * 109.47128 * 305.00289 * 4 3 2 34 34 H 1.09003 * 109.47316 * 185.00050 * 4 3 2 35 35 H 1.08997 * 109.47749 * 29.99649 * 6 5 4 36 36 H 1.09007 * 109.47558 * 150.00201 * 6 5 4 37 37 H 0.96999 * 120.00203 * 180.02562 * 10 9 7 38 38 H 0.97004 * 120.00129 * 5.09736 * 17 15 5 39 39 H 1.07999 * 120.45069 * 0.02581 * 19 18 17 40 40 H 1.07992 * 120.75754 * 179.70985 * 20 19 18 41 41 H 1.07994 * 120.34281 * 180.29757 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1062 -0.8924 -1.3404 7 6 5.5018 -1.2980 -0.9414 8 1 6.2202 -0.5461 -0.6499 9 6 5.8611 -2.6291 -0.9475 10 7 4.9862 -3.5448 -1.3020 11 14 7.5907 -3.1319 -0.4523 12 1 8.3758 -1.9220 -0.0990 13 1 7.5254 -4.0392 0.7215 14 1 8.2455 -3.8342 -1.5850 15 6 4.2633 1.3331 -2.3200 16 8 4.1561 2.5418 -2.2457 17 7 4.6697 0.7622 -3.4712 18 6 5.0677 1.5604 -4.5425 19 6 5.5877 0.9673 -5.6875 20 6 5.9845 1.7715 -6.7411 21 6 5.8361 3.1465 -6.6172 22 6 5.3063 3.6670 -5.4533 23 6 5.1420 5.1584 -5.3128 24 9 3.8793 5.5348 -5.7829 25 9 5.2638 5.5160 -3.9658 26 9 6.1304 5.8088 -6.0592 27 7 4.9420 2.8754 -4.4626 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1766 0.0902 35 1 3.3858 -1.3631 -0.6715 36 1 3.9139 -1.2121 -2.3646 37 1 5.2389 -4.4813 -1.3060 38 1 4.6852 -0.2041 -3.5543 39 1 5.6846 -0.1064 -5.7520 40 1 6.3963 1.3395 -7.6411 41 1 6.1315 3.8019 -7.4231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123848215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:22 Heat of formation + Delta-G solvation = -181.284360 kcal Electronic energy + Delta-G solvation = -31290.097343 eV Core-core repulsion = 26369.866554 eV Total energy + Delta-G solvation = -4920.230789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.20395 -48.73568 -48.66143 -42.01328 -40.62584 -38.78333 -36.68134 -36.11462 -34.56940 -33.75204 -32.16438 -30.83189 -28.87377 -27.67390 -27.10293 -25.20424 -24.71818 -23.80913 -23.40741 -21.00369 -20.10607 -19.58672 -19.41252 -18.86521 -18.51435 -18.00762 -17.26844 -17.18643 -17.07881 -16.69249 -16.49779 -16.27218 -16.01322 -15.69140 -15.47848 -15.45276 -15.11627 -14.92517 -14.83576 -14.81594 -14.77821 -14.39831 -14.26588 -13.67708 -13.64154 -13.42956 -13.11516 -13.01321 -12.76582 -12.75781 -12.62743 -12.17942 -11.95369 -11.92809 -11.66191 -11.40488 -11.02680 -10.63192 -10.58260 -10.28146 -9.64672 -9.22229 -8.17898 -6.33391 -0.27747 0.22124 1.36798 1.40459 1.44889 1.54317 1.64120 2.08788 2.40046 2.46918 2.65412 2.82252 2.93873 3.06682 3.12058 3.36774 3.69572 3.87123 4.00868 4.13828 4.15218 4.21512 4.34852 4.38062 4.52292 4.54284 4.59627 4.82229 4.83861 4.88539 4.94449 5.04154 5.23581 5.29787 5.52314 5.69004 5.75445 5.96974 6.07360 6.29119 6.57911 6.75365 7.05231 7.38680 7.63848 8.86787 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009809 B = 0.003774 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.803387 B = 7418.330812 C = 9237.251219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.056 3.944 4 C 0.135 3.865 5 N -0.606 5.606 6 C 0.261 3.739 7 C -0.548 4.548 8 H 0.047 0.953 9 C 0.028 3.972 10 N -0.914 5.914 11 Si 0.955 3.045 12 H -0.277 1.277 13 H -0.280 1.280 14 H -0.273 1.273 15 C 0.692 3.308 16 O -0.585 6.585 17 N -0.662 5.662 18 C 0.363 3.637 19 C -0.173 4.173 20 C -0.026 4.026 21 C -0.152 4.152 22 C 0.040 3.960 23 C 0.524 3.476 24 F -0.176 7.176 25 F -0.180 7.180 26 F -0.162 7.162 27 N -0.486 5.486 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.019 0.981 37 H 0.268 0.732 38 H 0.428 0.572 39 H 0.172 0.828 40 H 0.201 0.799 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 9.135 -10.861 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.021 4.021 4 C 0.012 3.988 5 N -0.340 5.340 6 C 0.141 3.859 7 C -0.586 4.586 8 H 0.065 0.935 9 C -0.173 4.173 10 N -0.553 5.553 11 Si 0.781 3.219 12 H -0.202 1.202 13 H -0.206 1.206 14 H -0.198 1.198 15 C 0.393 3.607 16 O -0.462 6.462 17 N -0.312 5.312 18 C 0.130 3.870 19 C -0.197 4.197 20 C -0.052 4.052 21 C -0.175 4.175 22 C -0.100 4.100 23 C 0.469 3.531 24 F -0.157 7.157 25 F -0.161 7.161 26 F -0.143 7.143 27 N -0.201 5.201 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.269 0.731 39 H 0.189 0.811 40 H 0.218 0.782 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.761 9.972 -9.901 14.162 hybrid contribution 0.675 -0.813 0.090 1.061 sum -1.086 9.159 -9.811 13.465 Atomic orbital electron populations 1.22869 0.80074 1.03372 1.00499 1.87994 1.21080 1.28165 1.95464 1.22938 0.93798 0.84727 1.00669 1.21373 0.92561 0.99162 0.85750 1.47392 1.67872 1.08322 1.10461 1.18986 0.95995 0.74256 0.96709 1.21700 0.97818 0.92417 1.46704 0.93470 1.25563 1.00726 0.96235 0.94774 1.70017 1.35802 1.01528 1.47965 0.85562 0.80224 0.77937 0.78205 1.20231 1.20624 1.19832 1.16127 0.78568 0.85052 0.80930 1.90932 1.59444 1.12580 1.83228 1.42978 1.66473 1.10674 1.11031 1.18485 0.93729 0.86922 0.87891 1.22101 1.01458 1.03768 0.92370 1.21918 0.93083 0.91342 0.98822 1.22102 1.00035 0.98078 0.97240 1.20899 1.03136 0.92413 0.93558 1.17968 0.74002 0.87376 0.73745 1.93200 1.41510 1.92622 1.88412 1.93222 1.95541 1.93074 1.34261 1.93196 1.61670 1.82995 1.76457 1.66867 1.18375 1.04873 1.30011 0.92387 0.94295 0.89086 0.89967 0.94622 0.89714 0.89206 0.94948 0.96277 0.92259 0.73076 0.81094 0.78171 0.80333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.98 16 2 O -0.41 -14.65 9.53 -148.98 -1.42 -16.07 16 3 C 0.06 1.88 6.28 71.98 0.45 2.34 16 4 C 0.14 5.18 5.81 86.38 0.50 5.68 16 5 N -0.61 -26.52 2.42 -844.20 -2.04 -28.56 16 6 C 0.26 12.52 4.79 85.64 0.41 12.93 16 7 C -0.55 -28.19 9.39 25.60 0.24 -27.95 16 8 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 9 C 0.03 1.43 5.46 84.66 0.46 1.90 16 10 N -0.91 -48.81 13.29 21.45 0.28 -48.53 16 11 Si 0.95 41.10 29.54 68.60 2.03 43.13 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 15 C 0.69 30.88 8.24 179.05 1.47 32.35 16 16 O -0.58 -28.55 14.18 -3.94 -0.06 -28.61 16 17 N -0.66 -25.77 5.27 -322.21 -1.70 -27.46 16 18 C 0.36 12.51 7.42 132.92 0.99 13.50 16 19 C -0.17 -4.03 9.94 22.49 0.22 -3.81 16 20 C -0.03 -0.43 10.17 22.44 0.23 -0.20 16 21 C -0.15 -3.01 9.43 22.37 0.21 -2.80 16 22 C 0.04 1.18 6.29 42.50 0.27 1.45 16 23 C 0.52 15.35 3.43 71.24 0.24 15.59 16 24 F -0.18 -5.12 17.30 44.97 0.78 -4.34 16 25 F -0.18 -6.41 17.03 44.97 0.77 -5.65 16 26 F -0.16 -3.84 16.43 44.97 0.74 -3.10 16 27 N -0.49 -18.40 7.49 -181.12 -1.36 -19.76 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 3.25 8.07 -2.39 -0.02 3.23 16 34 H 0.09 3.38 7.42 -2.39 -0.02 3.36 16 35 H 0.03 1.70 7.11 -2.39 -0.02 1.68 16 36 H 0.02 0.93 6.29 -2.38 -0.02 0.92 16 37 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 38 H 0.43 15.93 6.40 -92.70 -0.59 15.33 16 39 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.18 2.20 7.59 -2.91 -0.02 2.18 16 Total: -1.00 -70.59 367.29 5.47 -65.12 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.50 Total: 20.86 kcal Atomic # 6 Polarization: 46.01 SS G_CDS: 6.95 Total: 52.96 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -4.81 Total: -124.31 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.48 Total: -44.68 kcal Atomic # 9 Polarization: -15.37 SS G_CDS: 2.28 Total: -13.09 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -70.59 5.47 -65.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123848215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.166 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds