Wall clock time and date at job start Wed Apr 1 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00037 * 2 1 4 4 C 1.53005 * 109.47330 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47194 * 65.00011 * 4 3 2 6 6 C 1.46503 * 120.00028 * 270.00073 * 5 4 3 7 7 C 1.50697 * 109.47220 * 270.00269 * 6 5 4 8 8 H 1.07998 * 119.99562 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99715 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00247 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99785 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47124 * 60.00017 * 11 9 7 13 13 H 1.48500 * 109.47262 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47146 * 300.00472 * 11 9 7 15 15 C 1.34770 * 119.99969 * 90.00110 * 5 4 3 16 16 O 1.21586 * 120.00125 * 180.02562 * 15 5 4 17 17 N 1.34777 * 119.99971 * 0.27372 * 15 5 4 18 18 C 1.39976 * 120.00406 * 174.97402 * 17 15 5 19 19 C 1.39281 * 120.48024 * 34.96310 * 18 17 15 20 20 C 1.38506 * 118.35713 * 179.97438 * 19 18 17 21 21 C 1.38273 * 119.23892 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.54094 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.46564 * 90.00142 * 22 21 20 24 24 F 1.39906 * 109.46903 * 209.99839 * 22 21 20 25 25 F 1.39901 * 109.47352 * 330.00292 * 22 21 20 26 26 N 1.31853 * 120.91547 * 0.02562 * 21 20 19 27 27 C 1.31823 * 121.79531 * 359.66167 * 26 21 20 28 28 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47355 * 299.99959 * 1 2 3 30 30 H 1.09000 * 109.47013 * 60.00201 * 1 2 3 31 31 H 1.09005 * 109.46860 * 60.00078 * 3 2 1 32 32 H 1.08993 * 109.47221 * 300.00097 * 3 2 1 33 33 H 1.09004 * 109.46976 * 305.00228 * 4 3 2 34 34 H 1.09003 * 109.47244 * 185.00437 * 4 3 2 35 35 H 1.09001 * 109.46911 * 30.00073 * 6 5 4 36 36 H 1.09002 * 109.46739 * 150.00013 * 6 5 4 37 37 H 0.97000 * 119.99448 * 180.02562 * 10 9 7 38 38 H 0.97004 * 120.00258 * 354.98434 * 17 15 5 39 39 H 1.07998 * 120.82162 * 0.02846 * 19 18 17 40 40 H 1.08001 * 120.38182 * 179.97438 * 20 19 18 41 41 H 1.08005 * 119.66811 * 180.33909 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9449 8 1 6.2197 -0.5458 -0.6544 9 6 5.8606 -2.6288 -0.9527 10 7 4.9857 -3.5443 -1.3079 11 14 7.5909 -3.1317 -0.4602 12 1 7.8544 -2.6971 0.9351 13 1 7.7226 -4.6079 -0.5525 14 1 8.5715 -2.4897 -1.3721 15 6 4.2615 1.3338 -2.3217 16 8 4.6265 0.8190 -3.3610 17 7 4.1476 2.6741 -2.2372 18 6 4.5442 3.4794 -3.3112 19 6 4.3666 3.0456 -4.6228 20 6 4.7743 3.8781 -5.6519 21 6 5.3403 5.1021 -5.3465 22 6 5.7869 6.0130 -6.4609 23 9 4.7302 6.8530 -6.8284 24 9 6.8682 6.7869 -6.0257 25 9 6.1770 5.2448 -7.5632 26 7 5.4955 5.4830 -4.0938 27 6 5.1158 4.7242 -3.0850 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9786 2.1765 0.0890 35 1 3.3853 -1.3629 -0.6734 36 1 3.9121 -1.2113 -2.3669 37 1 5.2387 -4.4807 -1.3130 38 1 3.7910 3.0807 -1.4320 39 1 3.9210 2.0843 -4.8322 40 1 4.6524 3.5742 -6.6811 41 1 5.2543 5.0727 -2.0721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132778750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:36 Heat of formation + Delta-G solvation = -192.951549 kcal Electronic energy + Delta-G solvation = -30546.640057 eV Core-core repulsion = 25625.903341 eV Total energy + Delta-G solvation = -4920.736716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.20442 -48.73698 -48.66561 -42.15610 -40.78451 -38.82845 -36.86418 -36.31314 -34.74439 -33.48379 -32.09689 -31.10218 -29.03700 -27.32091 -27.07649 -25.08773 -24.93849 -24.11296 -23.38506 -21.15393 -19.86851 -19.71333 -19.58018 -19.23717 -18.61836 -18.49155 -17.41466 -17.21717 -16.93345 -16.74426 -16.35448 -16.05152 -15.92051 -15.65883 -15.64330 -15.48364 -15.12084 -15.03516 -14.90881 -14.82936 -14.80625 -14.62267 -14.31113 -14.13028 -13.62995 -13.39907 -13.08405 -13.04816 -12.87693 -12.76231 -12.53978 -12.20923 -12.16358 -11.93351 -11.69116 -11.38609 -11.01118 -10.69270 -10.60016 -10.53072 -9.79395 -9.32601 -8.17477 -6.31519 -0.45177 0.02861 1.34512 1.38742 1.42247 1.48783 1.57357 1.99257 2.39319 2.45179 2.48478 2.83286 2.89518 2.95454 3.13176 3.34502 3.55370 3.64361 3.80109 3.89935 4.13091 4.22967 4.32713 4.44212 4.45348 4.54145 4.59569 4.60803 4.87382 4.89655 4.93295 4.97214 5.12222 5.31664 5.51939 5.55620 5.78500 5.98289 6.10987 6.35808 6.46736 6.77794 6.96035 7.33338 7.52492 8.89039 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.002902 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.830734 B = 9645.721671 C =11323.575644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.042 3.958 4 C 0.100 3.900 5 N -0.599 5.599 6 C 0.288 3.712 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.963 3.037 12 H -0.260 1.260 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.694 3.306 16 O -0.614 6.614 17 N -0.666 5.666 18 C 0.154 3.846 19 C -0.097 4.097 20 C -0.094 4.094 21 C -0.008 4.008 22 C 0.532 3.468 23 F -0.172 7.172 24 F -0.172 7.172 25 F -0.170 7.170 26 N -0.437 5.437 27 C 0.089 3.911 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.034 0.966 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.427 0.573 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.634 20.016 -0.264 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C -0.035 4.035 4 C -0.022 4.022 5 N -0.331 5.331 6 C 0.167 3.833 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.787 3.213 12 H -0.185 1.185 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.396 3.604 16 O -0.493 6.493 17 N -0.317 5.317 18 C 0.055 3.945 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.146 4.146 22 C 0.477 3.523 23 F -0.153 7.153 24 F -0.153 7.153 25 F -0.152 7.152 26 N -0.145 5.145 27 C -0.074 4.074 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.052 0.948 36 H 0.012 0.988 37 H 0.074 0.926 38 H 0.268 0.732 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.927 20.018 -0.784 20.892 hybrid contribution 0.097 -1.250 -0.016 1.254 sum -5.829 18.768 -0.800 19.669 Atomic orbital electron populations 1.22842 0.80066 1.03053 1.00768 1.88047 1.21059 1.28849 1.95520 1.23229 0.93298 0.85034 1.01956 1.21932 0.93297 1.00224 0.86792 1.47364 1.67269 1.07811 1.10685 1.18609 0.95417 0.73734 0.95555 1.21742 0.98391 0.92518 1.45548 0.92808 1.25783 1.01465 0.96485 0.95200 1.70054 1.36459 1.01418 1.48713 0.85549 0.79457 0.77095 0.79162 1.18490 1.20590 1.20558 1.16091 0.78756 0.81238 0.84301 1.90878 1.54614 1.73148 1.30661 1.42553 1.66712 1.03832 1.18624 1.18947 0.95157 0.92353 0.88093 1.21850 0.98644 1.00603 0.91416 1.21887 0.95474 0.91813 1.02254 1.20865 1.06250 0.95071 0.92463 1.17695 0.75159 0.78592 0.80832 1.93226 1.57047 1.72747 1.92317 1.93209 1.56136 1.76450 1.89519 1.93214 1.91126 1.75258 1.55559 1.67144 1.14519 1.34242 0.98620 1.23014 0.95127 0.89738 0.99536 0.90205 0.91900 0.93881 0.88597 0.92990 0.89710 0.85886 0.94834 0.98846 0.92562 0.73154 0.83806 0.81578 0.77579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.42 -12.71 9.53 -148.98 -1.42 -14.13 16 3 C 0.04 0.92 6.28 71.98 0.45 1.37 16 4 C 0.10 2.62 5.54 86.38 0.48 3.10 16 5 N -0.60 -23.27 2.42 -844.19 -2.04 -25.32 16 6 C 0.29 15.08 4.98 85.63 0.43 15.50 16 7 C -0.54 -30.58 9.39 25.60 0.24 -30.34 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.01 0.56 5.46 84.65 0.46 1.02 16 10 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 11 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 C 0.69 26.30 8.14 179.06 1.46 27.76 16 16 O -0.61 -29.46 13.40 -3.99 -0.05 -29.52 16 17 N -0.67 -16.58 5.19 -316.86 -1.64 -18.23 16 18 C 0.15 3.84 6.32 38.23 0.24 4.08 16 19 C -0.10 -2.70 8.81 22.58 0.20 -2.50 16 20 C -0.09 -2.23 9.43 22.34 0.21 -2.02 16 21 C -0.01 -0.19 6.30 42.56 0.27 0.08 16 22 C 0.53 12.10 3.43 71.24 0.24 12.35 16 23 F -0.17 -3.79 17.30 44.97 0.78 -3.01 16 24 F -0.17 -4.20 17.03 44.97 0.77 -3.43 16 25 F -0.17 -3.74 16.43 44.97 0.74 -3.00 16 26 N -0.44 -10.50 9.95 -183.38 -1.82 -12.33 16 27 C 0.09 1.79 11.12 84.84 0.94 2.74 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 2.51 8.07 -2.38 -0.02 2.49 16 34 H 0.12 1.97 6.43 -2.39 -0.02 1.96 16 35 H 0.03 1.85 7.12 -2.39 -0.02 1.83 16 36 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 37 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.43 6.70 6.62 -92.71 -0.61 6.09 16 39 H 0.14 4.72 6.31 -2.91 -0.02 4.71 16 40 H 0.17 3.21 7.59 -2.91 -0.02 3.19 16 41 H 0.21 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -77.21 366.05 4.97 -72.24 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.48 Total: 10.62 kcal Atomic # 6 Polarization: 28.15 SS G_CDS: 6.87 Total: 35.02 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -5.23 Total: -111.40 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.47 Total: -43.65 kcal Atomic # 9 Polarization: -11.72 SS G_CDS: 2.28 Total: -9.44 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.21 4.97 -72.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132778750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.708 kcal (2) G-P(sol) polarization free energy of solvation -77.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds