Wall clock time and date at job start Wed Apr 1 2020 04:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 109.47241 * 2 1 4 4 C 1.34831 * 117.00176 * 179.97438 * 3 2 1 5 5 O 1.21601 * 119.99919 * 359.97438 * 4 3 2 6 6 C 1.46721 * 119.99891 * 179.97438 * 4 3 2 7 7 C 1.41481 * 126.51605 * 0.04096 * 6 4 3 8 8 N 1.30300 * 108.17242 * 179.97438 * 7 6 4 9 9 N 1.39892 * 109.22582 * 359.77434 * 8 7 6 10 10 C 1.46504 * 125.74520 * 180.23920 * 9 8 7 11 11 C 1.50707 * 109.47048 * 269.37801 * 10 9 8 12 12 H 1.07998 * 119.99994 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99805 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00289 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99947 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46746 * 90.00056 * 15 13 11 17 17 H 1.48505 * 109.47238 * 210.00064 * 15 13 11 18 18 H 1.48496 * 109.46850 * 330.00411 * 15 13 11 19 19 C 1.34794 * 108.51215 * 0.37581 * 9 8 7 20 20 N 1.38326 * 126.43742 * 179.90303 * 19 9 8 21 21 C 1.34781 * 120.00147 * 285.00782 * 20 19 9 22 22 O 1.21703 * 119.99590 * 355.56144 * 21 20 19 23 23 C 1.46575 * 120.00259 * 175.55553 * 21 20 19 24 24 C 1.36593 * 125.99478 * 180.02562 * 23 21 20 25 25 C 1.40338 * 106.70699 * 180.02562 * 24 23 21 26 26 C 1.35147 * 107.12087 * 0.02562 * 25 24 23 27 27 C 1.50704 * 125.61086 * 179.73923 * 26 25 24 28 28 O 1.33932 * 108.77417 * 359.97438 * 26 25 24 29 29 H 1.08989 * 109.47280 * 300.00290 * 1 2 3 30 30 H 1.09001 * 109.46691 * 60.00789 * 1 2 3 31 31 H 1.09006 * 109.46587 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47620 * 239.99359 * 2 1 3 33 33 H 1.09007 * 109.46985 * 119.99478 * 2 1 3 34 34 H 1.07993 * 125.91039 * 359.94293 * 7 6 4 35 35 H 1.09003 * 109.46917 * 29.37137 * 10 9 8 36 36 H 1.09003 * 109.47455 * 149.37463 * 10 9 8 37 37 H 0.97000 * 120.00236 * 179.97438 * 14 13 11 38 38 H 0.97004 * 120.00011 * 105.01364 * 20 19 9 39 39 H 1.08003 * 126.64579 * 0.04875 * 24 23 21 40 40 H 1.08008 * 126.44081 * 180.02562 * 25 24 23 41 41 H 1.09001 * 109.47108 * 90.00078 * 27 26 25 42 42 H 1.09002 * 109.46883 * 210.00364 * 27 26 25 43 43 H 1.08996 * 109.47091 * 329.99505 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3507 1.5457 0.0005 5 8 4.0915 0.5813 0.0015 6 6 3.9115 2.9015 0.0000 7 6 3.1825 4.1140 -0.0003 8 7 4.0341 5.1002 -0.0002 9 7 5.3349 4.5855 0.0053 10 6 6.5682 5.3763 0.0121 11 6 7.0061 5.6362 -1.4063 12 1 6.4242 5.2505 -2.2303 13 6 8.1496 6.3663 -1.6519 14 7 8.8584 6.8355 -0.6485 15 14 8.6928 6.6879 -3.4101 16 1 8.0805 7.9512 -3.8940 17 1 10.1724 6.8049 -3.4575 18 1 8.2571 5.5631 -4.2762 19 6 5.2626 3.2395 0.0003 20 7 6.3298 2.3595 0.0014 21 6 7.0465 2.1678 -1.1239 22 8 6.7064 2.7064 -2.1610 23 6 8.2354 1.3110 -1.0987 24 6 9.0478 1.0337 -2.1612 25 6 10.0543 0.1783 -1.6871 26 6 9.8153 -0.0272 -0.3729 27 6 10.6432 -0.8890 0.5453 28 8 8.7187 0.6571 -0.0220 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 2.1065 4.2062 -0.0010 35 1 6.3882 6.3257 0.5165 36 1 7.3490 4.8274 0.5387 37 1 9.6631 7.3489 -0.8213 38 1 6.5624 1.8801 0.8120 39 1 8.9372 1.4017 -3.1705 40 1 10.8671 -0.2376 -2.2640 41 1 11.4286 -0.2854 1.0001 42 1 10.0061 -1.3044 1.3261 43 1 11.0935 -1.7006 -0.0262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136859714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:25 Heat of formation + Delta-G solvation = -29.590618 kcal Electronic energy + Delta-G solvation = -30786.432333 eV Core-core repulsion = 26414.636218 eV Total energy + Delta-G solvation = -4371.796115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59908 -41.16570 -39.63275 -38.80572 -36.19062 -34.66686 -33.79508 -33.16923 -32.00843 -31.93904 -31.44743 -29.33387 -27.58156 -27.03447 -24.34213 -23.11665 -22.90221 -22.08494 -21.53871 -20.55680 -20.24592 -19.52589 -18.44955 -17.59321 -16.90104 -16.62890 -16.36805 -16.28544 -15.80126 -15.48427 -14.87110 -14.55043 -14.28828 -14.14015 -13.74256 -13.61682 -13.43587 -13.32198 -13.17657 -13.06440 -12.90974 -12.87275 -12.73337 -12.29506 -11.98148 -11.86024 -11.82388 -11.59592 -11.07332 -10.97183 -10.76059 -10.39889 -10.30654 -10.15596 -9.92048 -9.92003 -9.83461 -9.42229 -8.72186 -8.63342 -8.39156 -8.17535 -6.26343 -4.31233 1.18662 1.66702 2.41047 2.50959 2.67585 2.75909 3.06397 3.25568 3.30898 3.40541 3.44773 3.54701 3.69820 4.34676 4.59101 4.89475 4.90148 4.93301 4.98929 5.01628 5.11984 5.23383 5.24383 5.27490 5.29350 5.50317 5.53684 5.67236 5.71579 5.74650 5.87130 5.90217 6.01604 6.05620 6.28742 6.45540 6.64940 6.71168 6.81941 6.91395 7.03148 7.45894 7.54092 7.75927 7.80640 8.11091 8.23528 8.35198 8.77633 9.35426 10.82357 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007454 B = 0.004793 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3755.483779 B = 5840.214883 C = 8670.303265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.551 3.449 5 O -0.526 6.526 6 C -0.303 4.303 7 C 0.089 3.911 8 N -0.276 5.276 9 N -0.299 5.299 10 C 0.248 3.752 11 C -0.527 4.527 12 H 0.075 0.925 13 C 0.068 3.932 14 N -0.895 5.895 15 Si 0.904 3.096 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.267 1.267 19 C 0.383 3.617 20 N -0.647 5.647 21 C 0.618 3.382 22 O -0.469 6.469 23 C -0.063 4.063 24 C -0.114 4.114 25 C -0.222 4.222 26 C 0.014 3.986 27 C -0.076 4.076 28 O -0.161 6.161 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.192 0.808 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.267 0.733 38 H 0.420 0.580 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 -16.252 4.240 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.398 3.602 5 O -0.417 6.417 6 C -0.319 4.319 7 C -0.098 4.098 8 N -0.098 5.098 9 N -0.078 5.078 10 C 0.131 3.869 11 C -0.566 4.566 12 H 0.093 0.907 13 C -0.135 4.135 14 N -0.533 5.533 15 Si 0.731 3.269 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.192 1.192 19 C 0.153 3.847 20 N -0.301 5.301 21 C 0.404 3.596 22 O -0.340 6.340 23 C -0.115 4.115 24 C -0.135 4.135 25 C -0.241 4.241 26 C -0.039 4.039 27 C -0.132 4.132 28 O -0.058 6.058 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.209 0.791 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.259 0.741 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.874 -14.642 3.805 15.617 hybrid contribution 0.627 -0.920 -0.674 1.301 sum -3.247 -15.562 3.131 16.202 Atomic orbital electron populations 1.21791 0.92926 1.02611 1.03508 1.22913 0.94976 0.80743 1.02329 1.86552 1.24213 1.31507 1.85072 1.19790 0.79960 0.88439 0.72059 1.90811 1.60257 1.42340 1.48243 1.18831 0.91151 0.91785 1.30108 1.23849 0.99947 0.88385 0.97582 1.77251 0.86814 1.22174 1.23550 1.50001 1.07891 1.03237 1.46679 1.19987 0.75262 0.91445 1.00162 1.21284 1.09770 1.34767 0.90739 0.90719 1.24869 0.95675 0.94825 0.98171 1.69920 1.16630 1.35838 1.30940 0.86353 0.77536 0.79047 0.83951 1.20298 1.20989 1.19157 1.17492 0.86812 0.82812 0.97592 1.42069 1.30610 1.42874 1.14531 1.16381 0.80194 0.79433 0.83569 1.90978 1.66932 1.45935 1.30159 1.21761 0.99838 1.03588 0.86281 1.21927 0.93690 0.97914 0.99946 1.21538 1.02989 1.05013 0.94578 1.22754 0.88377 0.97252 0.95487 1.20382 0.97634 0.97283 0.97936 1.83990 1.35959 1.49584 1.36233 0.91520 0.91478 0.90575 0.91533 0.91538 0.79142 0.91913 0.93063 0.92328 0.74077 0.82167 0.82750 0.89629 0.90244 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.74 6.20 37.16 0.23 0.97 16 3 O -0.36 -5.30 10.07 -40.85 -0.41 -5.71 16 4 C 0.55 9.82 7.94 34.16 0.27 10.09 16 5 O -0.53 -10.16 16.09 -19.34 -0.31 -10.47 16 6 C -0.30 -5.81 6.15 -104.85 -0.64 -6.45 16 7 C 0.09 1.59 11.86 -16.97 -0.20 1.39 16 8 N -0.28 -5.92 12.47 30.88 0.39 -5.53 16 9 N -0.30 -6.87 3.58 -61.14 -0.22 -7.09 16 10 C 0.25 6.32 6.09 -5.19 -0.03 6.29 16 11 C -0.53 -14.77 8.63 -34.44 -0.30 -15.07 16 12 H 0.07 2.24 7.30 -52.49 -0.38 1.85 16 13 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 14 N -0.90 -25.41 13.29 55.43 0.74 -24.67 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.06 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.38 8.07 6.48 -153.53 -0.99 7.07 16 20 N -0.65 -12.68 4.47 -12.30 -0.05 -12.73 16 21 C 0.62 13.07 7.74 -12.90 -0.10 12.97 16 22 O -0.47 -11.58 15.54 5.19 0.08 -11.50 16 23 C -0.06 -1.14 7.13 -36.82 -0.26 -1.41 16 24 C -0.11 -1.89 10.62 -39.39 -0.42 -2.31 16 25 C -0.22 -2.92 10.77 -39.89 -0.43 -3.35 16 26 C 0.01 0.18 7.31 -35.41 -0.26 -0.08 16 27 C -0.08 -0.60 10.41 36.01 0.37 -0.22 16 28 O -0.16 -2.55 10.41 4.97 0.05 -2.50 16 29 H 0.07 0.52 8.14 -51.94 -0.42 0.10 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.19 2.58 8.06 -52.49 -0.42 2.16 16 35 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.05 1.32 8.09 -51.93 -0.42 0.90 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.42 7.01 8.58 -40.82 -0.35 6.66 16 39 H 0.16 2.57 8.06 -52.48 -0.42 2.15 16 40 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -34.30 389.55 -6.73 -41.03 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.36 Total: 5.40 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -2.48 Total: 10.83 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.85 Total: -50.02 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.59 Total: -30.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.30 -6.73 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136859714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.441 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds