Wall clock time and date at job start Wed Apr 1 2020 04:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47349 * 345.23303 * 3 2 1 5 5 C 1.36933 * 120.00264 * 263.35673 * 4 3 2 6 6 H 1.08004 * 120.00019 * 203.15623 * 5 4 3 7 7 C 1.38818 * 119.99995 * 23.15455 * 5 4 3 8 8 N 1.31612 * 119.99640 * 10.00873 * 7 5 4 9 9 Si 1.86796 * 119.99612 * 190.00575 * 7 5 4 10 10 H 1.48495 * 109.47348 * 60.00569 * 9 7 5 11 11 H 1.48507 * 109.46705 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47413 * 299.99615 * 9 7 5 13 13 C 1.46508 * 119.99529 * 83.35324 * 4 3 2 14 14 C 1.50698 * 109.46644 * 90.00211 * 13 4 3 15 15 O 1.21294 * 120.00311 * 359.97438 * 14 13 4 16 16 N 1.34773 * 119.99620 * 179.97438 * 14 13 4 17 17 C 1.40110 * 119.99981 * 184.91545 * 16 14 13 18 18 C 1.38867 * 120.01601 * 28.20730 * 17 16 14 19 19 C 1.38073 * 119.98602 * 180.02562 * 18 17 16 20 20 C 1.38739 * 120.01315 * 359.97438 * 19 18 17 21 21 O 1.35977 * 119.98394 * 179.97438 * 20 19 18 22 22 C 1.42898 * 116.99539 * 0.02562 * 21 20 19 23 23 C 1.53005 * 109.46791 * 179.97438 * 22 21 20 24 24 C 1.38700 * 120.03453 * 0.25706 * 20 19 18 25 25 C 1.38117 * 120.00960 * 359.48904 * 24 20 19 26 26 N 1.48015 * 120.00556 * 180.27708 * 25 24 20 27 27 O 1.21802 * 120.00228 * 6.22461 * 26 25 24 28 28 O 1.21801 * 119.99845 * 186.22861 * 26 25 24 29 29 H 4.40644 * 5.51438 * 179.97438 * 4 1 2 30 30 H 1.09008 * 109.47051 * 225.23853 * 3 2 1 31 31 H 1.08996 * 109.47356 * 105.23970 * 3 2 1 32 32 H 0.97010 * 119.99807 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.46890 * 330.00280 * 13 4 3 34 34 H 1.08999 * 109.46703 * 209.99834 * 13 4 3 35 35 H 0.97003 * 120.00266 * 4.91342 * 16 14 13 36 36 H 1.07992 * 120.00678 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.98934 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.46892 * 299.98964 * 22 21 20 39 39 H 1.08999 * 109.47610 * 59.99858 * 22 21 20 40 40 H 1.08999 * 109.47454 * 59.99145 * 23 22 21 41 41 H 1.08994 * 109.47266 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.47037 * 299.99720 * 23 22 21 43 43 H 1.07996 * 119.99669 * 179.74011 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3347 0.3521 5 6 3.4927 -1.6144 1.6439 6 1 4.1799 -2.4213 1.8514 7 6 2.9721 -0.8606 2.6869 8 7 1.9914 -0.0126 2.4604 9 14 3.6635 -1.0501 4.4119 10 1 5.1080 -0.7059 4.4068 11 1 2.9416 -0.1400 5.3371 12 1 3.4907 -2.4543 4.8630 13 6 3.2411 -2.3710 -0.6782 14 6 4.6079 -2.3126 -1.3102 15 8 5.4139 -1.4865 -0.9372 16 7 4.9347 -3.1785 -2.2899 17 6 6.2371 -3.1931 -2.8063 18 6 7.3053 -2.8054 -2.0080 19 6 8.5884 -2.8196 -2.5176 20 6 8.8108 -3.2214 -3.8268 21 8 10.0747 -3.2346 -4.3282 22 6 11.1248 -2.8227 -3.4510 23 6 12.4644 -2.9039 -4.1859 24 6 7.7439 -3.6042 -4.6262 25 6 6.4605 -3.5955 -4.1160 26 7 5.3227 -4.0099 -4.9673 27 8 5.5275 -4.4655 -6.0782 28 8 4.1817 -3.8951 -4.5570 29 1 -1.0498 -0.0004 0.0003 30 1 3.0090 0.7245 0.7297 31 1 3.0092 0.2709 -0.9915 32 1 1.6279 0.5144 3.1892 33 1 2.4806 -2.2042 -1.4409 34 1 3.0921 -3.3508 -0.2245 35 1 4.2683 -3.7916 -2.6376 36 1 7.1323 -2.4930 -0.9888 37 1 9.4191 -2.5177 -1.8969 38 1 10.9481 -1.7963 -3.1295 39 1 11.1485 -3.4775 -2.5799 40 1 12.4410 -2.2495 -5.0573 41 1 13.2655 -2.5902 -3.5168 42 1 12.6409 -3.9304 -4.5072 43 1 7.9173 -3.9129 -5.6465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281329612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:46 Heat of formation + Delta-G solvation = 52.418247 kcal Electronic energy + Delta-G solvation = -29988.036805 eV Core-core repulsion = 25619.796862 eV Total energy + Delta-G solvation = -4368.239943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.38897 -40.74851 -39.72163 -37.76817 -36.73240 -35.81704 -34.37994 -32.31401 -32.02094 -31.60293 -31.38776 -29.42730 -27.39380 -26.46133 -25.94522 -24.14566 -23.59594 -22.26387 -21.82618 -20.16375 -19.63722 -18.80183 -17.96207 -17.56517 -17.54928 -17.38704 -16.93925 -16.55549 -16.39551 -15.83065 -15.11648 -14.93821 -14.43483 -14.25480 -13.90949 -13.81888 -13.55536 -13.40510 -13.19970 -13.03091 -12.72442 -12.61045 -12.54704 -11.64569 -11.58789 -11.53894 -11.47286 -11.35088 -11.24271 -11.17036 -11.00318 -10.79859 -10.36112 -10.14956 -10.13560 -9.90147 -9.55833 -9.00364 -8.89559 -8.43363 -8.10827 -7.09612 -5.85678 -3.37714 -0.29905 0.83699 1.19232 1.24725 2.69940 2.81615 3.00056 3.28622 3.33120 3.38462 3.39019 4.11147 4.17955 4.34124 4.35809 4.40307 4.46790 4.46945 4.55669 4.75882 4.78926 4.93350 5.12394 5.26204 5.33560 5.35029 5.45176 5.53734 5.59452 5.65179 5.72506 5.82782 5.91867 5.98337 6.15086 6.28069 6.47436 6.70045 6.86902 7.24470 7.40714 7.44851 7.57860 7.64662 8.17240 8.43163 9.00424 9.15778 9.61788 10.07121 11.16832 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.002938 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.756651 B = 9528.263762 C =11393.279412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.093 4.093 3 C 0.270 3.730 4 N -0.558 5.558 5 C -0.266 4.266 6 H 0.071 0.929 7 C 0.009 3.991 8 N -0.892 5.892 9 Si 0.911 3.089 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.133 3.867 14 C 0.480 3.520 15 O -0.497 6.497 16 N -0.674 5.674 17 C 0.210 3.790 18 C -0.096 4.096 19 C -0.128 4.128 20 C 0.103 3.897 21 O -0.310 6.310 22 C 0.051 3.949 23 C -0.152 4.152 24 C -0.076 4.076 25 C -0.056 4.056 26 N 0.043 4.957 27 O -0.157 6.157 28 O -0.174 6.174 29 H 0.191 0.809 30 H 0.104 0.896 31 H 0.033 0.967 32 H 0.257 0.743 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.421 0.579 36 H 0.171 0.829 37 H 0.147 0.853 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.414 -6.999 -12.381 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.095 4.095 3 C 0.145 3.855 4 N -0.275 5.275 5 C -0.394 4.394 6 H 0.089 0.911 7 C -0.190 4.190 8 N -0.535 5.535 9 Si 0.741 3.259 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.209 1.209 13 C 0.000 4.000 14 C 0.267 3.733 15 O -0.369 6.369 16 N -0.327 5.327 17 C 0.108 3.892 18 C -0.117 4.117 19 C -0.148 4.148 20 C 0.056 3.944 21 O -0.224 6.224 22 C -0.024 4.024 23 C -0.209 4.209 24 C -0.096 4.096 25 C -0.144 4.144 26 N 0.558 4.442 27 O -0.374 6.374 28 O -0.382 6.382 29 H 0.208 0.792 30 H 0.122 0.878 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.265 0.735 36 H 0.189 0.811 37 H 0.165 0.835 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 16.347 -6.085 -11.601 20.948 hybrid contribution -0.448 -0.399 0.817 1.013 sum 15.899 -6.484 -10.784 20.276 Atomic orbital electron populations 1.24176 0.95319 1.03897 1.08558 1.24138 0.95127 0.96801 0.93475 1.17774 0.82681 0.87976 0.97052 1.43593 1.73068 1.06489 1.04355 1.19085 1.21733 1.17147 0.81474 0.91086 1.25046 0.96389 0.99340 0.98228 1.69996 1.24754 1.27423 1.31306 0.86245 0.78467 0.77509 0.83711 1.20911 1.21529 1.20867 1.20722 0.89873 0.95947 0.93414 1.24115 0.93588 0.78612 0.77022 1.90618 1.51493 1.35177 1.59598 1.44971 1.09269 1.39539 1.38921 1.17695 0.87876 0.94974 0.88638 1.21372 0.89254 0.99138 1.01910 1.21648 0.98595 0.99999 0.94568 1.18387 0.84787 0.99327 0.91862 1.86088 1.12439 1.82889 1.41034 1.22898 0.86274 0.99991 0.93228 1.21777 0.93935 1.03607 1.01574 1.19736 0.87507 1.00682 1.01659 1.20441 0.86974 1.16669 0.90301 1.43353 1.01891 0.97944 1.01011 1.94529 1.91446 1.45439 1.05939 1.94392 1.07224 1.59708 1.76826 0.79174 0.87840 0.94894 0.93194 0.90156 0.89195 0.73532 0.81147 0.83489 0.91572 0.91640 0.91366 0.90123 0.91398 0.82240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.70 19.25 29.55 0.57 -6.13 16 2 C -0.09 -2.22 11.49 -37.12 -0.43 -2.65 16 3 C 0.27 6.43 5.40 -6.83 -0.04 6.39 16 4 N -0.56 -13.21 1.98 -177.94 -0.35 -13.56 16 5 C -0.27 -6.89 9.67 -15.06 -0.15 -7.04 16 6 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 7 C 0.01 0.25 5.10 -17.43 -0.09 0.16 16 8 N -0.89 -24.64 9.09 55.49 0.50 -24.14 16 9 Si 0.91 21.13 29.57 -169.99 -5.03 16.10 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.13 2.50 6.15 -5.19 -0.03 2.47 16 14 C 0.48 8.52 7.68 -10.99 -0.08 8.43 16 15 O -0.50 -10.29 13.77 5.55 0.08 -10.22 16 16 N -0.67 -9.91 4.77 -9.83 -0.05 -9.95 16 17 C 0.21 2.95 6.37 -83.62 -0.53 2.42 16 18 C -0.10 -1.26 8.69 -39.41 -0.34 -1.61 16 19 C -0.13 -1.33 9.03 -39.46 -0.36 -1.69 16 20 C 0.10 1.09 6.69 -39.23 -0.26 0.83 16 21 O -0.31 -2.92 10.14 -19.67 -0.20 -3.12 16 22 C 0.05 0.33 5.46 37.16 0.20 0.53 16 23 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 24 C -0.08 -0.87 9.49 -39.45 -0.37 -1.24 16 25 C -0.06 -0.74 6.86 -79.77 -0.55 -1.29 16 26 N 0.04 0.62 4.45 34.05 0.15 0.77 16 27 O -0.16 -2.25 18.46 -29.46 -0.54 -2.79 16 28 O -0.17 -2.57 15.91 -29.46 -0.47 -3.04 16 29 H 0.19 3.54 7.80 -54.10 -0.42 3.12 16 30 H 0.10 2.73 6.44 -51.92 -0.33 2.39 16 31 H 0.03 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.09 1.56 8.04 -51.93 -0.42 1.14 16 35 H 0.42 5.56 6.13 -40.82 -0.25 5.31 16 36 H 0.17 2.53 6.02 -52.49 -0.32 2.22 16 37 H 0.15 1.13 6.29 -52.49 -0.33 0.80 16 38 H 0.07 0.38 7.66 -51.93 -0.40 -0.02 16 39 H 0.07 0.35 7.66 -51.93 -0.40 -0.05 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.16 1.62 7.62 -52.49 -0.40 1.22 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -31.30 377.50 -7.21 -38.51 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.92 Total: 6.51 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.07 Total: -0.76 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.26 Total: -46.88 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.14 Total: -19.17 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.30 -7.21 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281329612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.926 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds