Wall clock time and date at job start Wed Apr 1 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47349 * 345.23303 * 3 2 1 5 5 C 1.36933 * 120.00264 * 263.35673 * 4 3 2 6 6 H 1.08004 * 120.00019 * 203.15623 * 5 4 3 7 7 C 1.38818 * 119.99995 * 23.15455 * 5 4 3 8 8 N 1.31612 * 119.99640 * 10.00873 * 7 5 4 9 9 Si 1.86796 * 119.99612 * 190.00575 * 7 5 4 10 10 H 1.48495 * 109.47348 * 60.00569 * 9 7 5 11 11 H 1.48507 * 109.46705 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47413 * 299.99615 * 9 7 5 13 13 C 1.46508 * 119.99529 * 83.35324 * 4 3 2 14 14 C 1.50698 * 109.46644 * 90.00211 * 13 4 3 15 15 O 1.21294 * 120.00311 * 359.97438 * 14 13 4 16 16 N 1.34773 * 119.99620 * 179.97438 * 14 13 4 17 17 C 1.40110 * 119.99981 * 184.91545 * 16 14 13 18 18 C 1.38867 * 120.01601 * 28.20730 * 17 16 14 19 19 C 1.38073 * 119.98602 * 180.02562 * 18 17 16 20 20 C 1.38739 * 120.01315 * 359.97438 * 19 18 17 21 21 O 1.35977 * 119.98394 * 179.97438 * 20 19 18 22 22 C 1.42898 * 116.99539 * 0.02562 * 21 20 19 23 23 C 1.53005 * 109.46791 * 179.97438 * 22 21 20 24 24 C 1.38700 * 120.03453 * 0.25706 * 20 19 18 25 25 C 1.38117 * 120.00960 * 359.48904 * 24 20 19 26 26 N 1.48015 * 120.00556 * 180.27708 * 25 24 20 27 27 O 1.21802 * 120.00228 * 6.22461 * 26 25 24 28 28 O 1.21801 * 119.99845 * 186.22861 * 26 25 24 29 29 H 4.40644 * 5.51438 * 179.97438 * 4 1 2 30 30 H 1.09008 * 109.47051 * 225.23853 * 3 2 1 31 31 H 1.08996 * 109.47356 * 105.23970 * 3 2 1 32 32 H 0.97010 * 119.99807 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.46890 * 330.00280 * 13 4 3 34 34 H 1.08999 * 109.46703 * 209.99834 * 13 4 3 35 35 H 0.97003 * 120.00266 * 4.91342 * 16 14 13 36 36 H 1.07992 * 120.00678 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.98934 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.46892 * 299.98964 * 22 21 20 39 39 H 1.08999 * 109.47610 * 59.99858 * 22 21 20 40 40 H 1.08999 * 109.47454 * 59.99145 * 23 22 21 41 41 H 1.08994 * 109.47266 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.47037 * 299.99720 * 23 22 21 43 43 H 1.07996 * 119.99669 * 179.74011 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3347 0.3521 5 6 3.4927 -1.6144 1.6439 6 1 4.1799 -2.4213 1.8514 7 6 2.9721 -0.8606 2.6869 8 7 1.9914 -0.0126 2.4604 9 14 3.6635 -1.0501 4.4119 10 1 5.1080 -0.7059 4.4068 11 1 2.9416 -0.1400 5.3371 12 1 3.4907 -2.4543 4.8630 13 6 3.2411 -2.3710 -0.6782 14 6 4.6079 -2.3126 -1.3102 15 8 5.4139 -1.4865 -0.9372 16 7 4.9347 -3.1785 -2.2899 17 6 6.2371 -3.1931 -2.8063 18 6 7.3053 -2.8054 -2.0080 19 6 8.5884 -2.8196 -2.5176 20 6 8.8108 -3.2214 -3.8268 21 8 10.0747 -3.2346 -4.3282 22 6 11.1248 -2.8227 -3.4510 23 6 12.4644 -2.9039 -4.1859 24 6 7.7439 -3.6042 -4.6262 25 6 6.4605 -3.5955 -4.1160 26 7 5.3227 -4.0099 -4.9673 27 8 5.5275 -4.4655 -6.0782 28 8 4.1817 -3.8951 -4.5570 29 1 -1.0498 -0.0004 0.0003 30 1 3.0090 0.7245 0.7297 31 1 3.0092 0.2709 -0.9915 32 1 1.6279 0.5144 3.1892 33 1 2.4806 -2.2042 -1.4409 34 1 3.0921 -3.3508 -0.2245 35 1 4.2683 -3.7916 -2.6376 36 1 7.1323 -2.4930 -0.9888 37 1 9.4191 -2.5177 -1.8969 38 1 10.9481 -1.7963 -3.1295 39 1 11.1485 -3.4775 -2.5799 40 1 12.4410 -2.2495 -5.0573 41 1 13.2655 -2.5902 -3.5168 42 1 12.6409 -3.9304 -4.5072 43 1 7.9173 -3.9129 -5.6465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281329612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:45 Heat of formation + Delta-G solvation = 35.593218 kcal Electronic energy + Delta-G solvation = -29988.766393 eV Core-core repulsion = 25619.796862 eV Total energy + Delta-G solvation = -4368.969531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.48811 -41.78599 -40.82780 -38.83934 -37.86204 -37.52082 -35.58385 -33.51753 -33.26468 -33.07109 -32.67750 -30.52612 -28.81405 -27.94397 -27.48742 -24.93076 -24.73723 -23.62671 -22.89186 -21.52023 -20.59383 -19.90873 -19.38958 -19.08052 -18.67145 -18.37445 -18.21769 -17.96302 -17.17999 -16.96677 -16.91277 -16.24142 -15.69106 -15.35871 -15.27787 -15.14207 -15.02538 -14.56735 -14.28103 -14.19987 -13.58066 -13.48804 -13.35249 -13.25596 -13.18049 -12.77083 -12.76695 -12.55788 -12.43510 -12.37576 -12.28696 -12.17743 -12.02213 -11.93129 -11.26915 -11.11910 -10.83944 -10.76547 -10.66963 -10.28205 -9.12324 -8.95922 -7.83543 -5.36313 -1.35207 -0.14490 0.14450 0.19804 1.46964 1.50145 1.54070 1.55801 1.74167 2.03498 2.21970 2.34839 2.52364 2.60461 3.18310 3.30355 3.45866 3.55214 3.72031 3.75495 3.86827 4.05648 4.09388 4.13552 4.20059 4.37161 4.43699 4.49744 4.61512 4.68643 4.74662 4.88975 4.92225 4.93026 4.95443 5.15221 5.25600 5.32069 5.37178 5.60577 5.67501 6.12611 6.17869 6.30338 6.43840 7.02930 7.08981 7.36263 7.73027 8.16015 9.16810 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.002938 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.756651 B = 9528.263762 C =11393.279412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.132 4.132 3 C 0.277 3.723 4 N -0.575 5.575 5 C -0.267 4.267 6 H 0.071 0.929 7 C -0.041 4.041 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.283 1.283 11 H -0.296 1.296 12 H -0.275 1.275 13 C 0.131 3.869 14 C 0.491 3.509 15 O -0.531 6.531 16 N -0.664 5.664 17 C 0.186 3.814 18 C -0.105 4.105 19 C -0.113 4.113 20 C 0.117 3.883 21 O -0.316 6.316 22 C 0.038 3.962 23 C -0.150 4.150 24 C -0.075 4.075 25 C -0.057 4.057 26 N 0.042 4.958 27 O -0.153 6.153 28 O -0.193 6.193 29 H 0.225 0.775 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.249 0.751 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.428 0.572 36 H 0.153 0.847 37 H 0.178 0.822 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.160 -7.979 -13.161 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.135 4.135 3 C 0.152 3.848 4 N -0.293 5.293 5 C -0.397 4.397 6 H 0.089 0.911 7 C -0.237 4.237 8 N -0.559 5.559 9 Si 0.797 3.203 10 H -0.209 1.209 11 H -0.222 1.222 12 H -0.201 1.201 13 C 0.000 4.000 14 C 0.278 3.722 15 O -0.406 6.406 16 N -0.317 5.317 17 C 0.086 3.914 18 C -0.126 4.126 19 C -0.133 4.133 20 C 0.070 3.930 21 O -0.230 6.230 22 C -0.036 4.036 23 C -0.207 4.207 24 C -0.095 4.095 25 C -0.145 4.145 26 N 0.556 4.444 27 O -0.372 6.372 28 O -0.397 6.397 29 H 0.241 0.759 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.272 0.728 36 H 0.171 0.829 37 H 0.195 0.805 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 18.100 -7.115 -12.422 23.077 hybrid contribution -0.795 -0.159 0.887 1.201 sum 17.306 -7.275 -11.536 22.034 Atomic orbital electron populations 1.24991 0.96259 1.02315 1.06885 1.24380 0.95755 0.98325 0.94990 1.17527 0.83114 0.87707 0.96469 1.43664 1.73661 1.07310 1.04674 1.19322 1.21025 1.16637 0.82708 0.91118 1.25707 0.97056 0.99705 1.01273 1.70171 1.26015 1.28342 1.31410 0.85335 0.77530 0.77401 0.80013 1.20885 1.22206 1.20122 1.20885 0.90849 0.95334 0.92925 1.23438 0.92682 0.78650 0.77415 1.90611 1.52186 1.36729 1.61056 1.44551 1.10118 1.38990 1.38079 1.17781 0.87440 0.96862 0.89296 1.21268 0.90265 0.99868 1.01232 1.21890 0.98266 0.98319 0.94789 1.18392 0.85313 0.97823 0.91496 1.86119 1.12219 1.82601 1.42029 1.23262 0.85853 1.00871 0.93618 1.21813 0.93576 1.03541 1.01780 1.19952 0.86975 1.00122 1.02431 1.20467 0.87174 1.16988 0.89852 1.43506 1.02095 0.97775 1.01071 1.94512 1.91457 1.45142 1.06105 1.94387 1.07753 1.60538 1.76990 0.75861 0.91098 0.93769 0.94173 0.88559 0.87861 0.72772 0.82914 0.80518 0.90619 0.90141 0.91778 0.88182 0.91530 0.80841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.48 19.25 74.32 1.43 -11.05 16 2 C -0.13 -6.35 11.49 31.13 0.36 -6.00 16 3 C 0.28 13.53 5.40 84.57 0.46 13.99 16 4 N -0.58 -27.59 1.98 -716.88 -1.42 -29.00 16 5 C -0.27 -14.05 9.67 84.04 0.81 -13.23 16 6 H 0.07 3.63 7.85 -2.91 -0.02 3.60 16 7 C -0.04 -2.21 5.10 84.86 0.43 -1.78 16 8 N -0.92 -51.60 9.09 21.65 0.20 -51.40 16 9 Si 0.97 44.01 29.57 68.60 2.03 46.04 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 13 C 0.13 4.92 6.15 85.63 0.53 5.44 16 14 C 0.49 17.52 7.68 87.66 0.67 18.19 16 15 O -0.53 -22.36 13.77 -3.07 -0.04 -22.40 16 16 N -0.66 -19.41 4.77 -303.40 -1.45 -20.86 16 17 C 0.19 5.13 6.37 38.11 0.24 5.37 16 18 C -0.11 -2.69 8.69 22.38 0.19 -2.49 16 19 C -0.11 -2.09 9.03 22.35 0.20 -1.89 16 20 C 0.12 2.17 6.69 22.50 0.15 2.32 16 21 O -0.32 -5.02 10.14 -93.29 -0.95 -5.96 16 22 C 0.04 0.36 5.46 71.98 0.39 0.76 16 23 C -0.15 -1.02 10.28 71.98 0.74 -0.28 16 24 C -0.07 -1.56 9.49 22.35 0.21 -1.35 16 25 C -0.06 -1.45 6.86 36.49 0.25 -1.20 16 26 N 0.04 1.18 4.45 -46.20 -0.21 0.97 16 27 O -0.15 -4.21 18.46 18.88 0.35 -3.86 16 28 O -0.19 -5.63 15.91 18.89 0.30 -5.33 16 29 H 0.22 7.80 7.80 -4.43 -0.03 7.77 16 30 H 0.07 3.90 6.44 -2.38 -0.02 3.89 16 31 H 0.04 1.99 8.12 -2.39 -0.02 1.98 16 32 H 0.25 13.91 8.31 -92.70 -0.77 13.13 16 33 H 0.10 3.27 8.07 -2.39 -0.02 3.25 16 34 H 0.10 3.54 8.04 -2.39 -0.02 3.53 16 35 H 0.43 11.18 6.13 -92.71 -0.57 10.61 16 36 H 0.15 4.56 6.02 -2.91 -0.02 4.54 16 37 H 0.18 2.13 6.29 -2.91 -0.02 2.11 16 38 H 0.08 0.61 7.66 -2.39 -0.02 0.59 16 39 H 0.08 0.56 7.66 -2.39 -0.02 0.54 16 40 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.17 3.11 7.62 -2.91 -0.02 3.08 16 Total: -1.00 -67.79 377.50 6.39 -61.40 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.50 Total: 23.62 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 7.08 Total: 6.80 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -2.87 Total: -100.30 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.34 Total: -37.55 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -67.79 6.39 -61.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281329612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.989 kcal (2) G-P(sol) polarization free energy of solvation -67.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds