Wall clock time and date at job start Wed Apr 1 2020 05:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00201 * 2 1 4 4 C 1.50702 * 109.47417 * 270.00373 * 3 2 1 5 5 H 1.08003 * 119.99466 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00346 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99825 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47076 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47009 * 120.00196 * 8 6 4 11 11 H 1.48500 * 109.46877 * 240.00537 * 8 6 4 12 12 C 1.34775 * 120.00004 * 180.02562 * 2 1 3 13 13 O 1.21368 * 119.99801 * 174.39942 * 12 2 1 14 14 C 1.49328 * 119.99968 * 354.39805 * 12 2 1 15 15 O 1.21389 * 120.00300 * 0.67265 * 14 12 2 16 16 N 1.34779 * 120.00138 * 180.67884 * 14 12 2 17 17 C 1.39852 * 120.00238 * 185.63368 * 16 14 12 18 18 C 1.38938 * 119.98542 * 209.24363 * 17 16 14 19 19 C 1.38216 * 120.18259 * 179.97438 * 18 17 16 20 20 C 1.38427 * 119.97219 * 0.24113 * 19 18 17 21 21 C 1.39443 * 119.99364 * 359.52925 * 20 19 18 22 22 C 1.38422 * 120.05175 * 0.47083 * 21 20 19 23 23 N 1.40220 * 119.26925 * 180.20563 * 21 20 19 24 24 C 1.46496 * 120.49502 * 195.76086 * 23 21 20 25 25 C 1.35079 * 119.00011 * 15.74099 * 23 21 20 26 26 O 1.21297 * 120.12912 * 181.63696 * 25 23 21 27 27 C 1.50752 * 119.73806 * 1.65501 * 25 23 21 28 28 O 1.36070 * 120.57361 * 180.33533 * 20 19 18 29 29 H 1.09004 * 109.46395 * 263.75700 * 1 2 3 30 30 H 1.08998 * 109.47048 * 23.75496 * 1 2 3 31 31 H 1.08994 * 109.47275 * 143.75961 * 1 2 3 32 32 H 1.09007 * 109.47028 * 30.00295 * 3 2 1 33 33 H 1.08993 * 109.47476 * 150.00079 * 3 2 1 34 34 H 0.97008 * 119.99900 * 179.97438 * 7 6 4 35 35 H 0.97001 * 119.99746 * 5.62770 * 16 14 12 36 36 H 1.08005 * 119.90688 * 359.94921 * 18 17 16 37 37 H 1.07996 * 120.01077 * 179.97438 * 19 18 17 38 38 H 1.08001 * 120.11779 * 179.74270 * 22 21 20 39 39 H 1.08996 * 109.47345 * 90.00266 * 24 23 21 40 40 H 1.09000 * 109.47160 * 210.00009 * 24 23 21 41 41 H 1.09003 * 109.47600 * 329.99612 * 24 23 21 42 42 H 1.08996 * 109.44232 * 88.72093 * 27 25 23 43 43 H 1.09001 * 109.44333 * 208.65698 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5534 3.6181 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.8608 2.4165 -4.3673 10 1 2.7999 4.7373 -3.6678 11 1 4.9005 3.5257 -3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3482 -1.1696 -0.1031 14 6 1.3976 -2.4574 0.1251 15 8 0.1871 -2.4556 0.2155 16 7 2.0726 -3.6239 0.1384 17 6 1.3745 -4.8358 0.1372 18 6 1.9315 -5.9585 0.7368 19 6 1.2450 -7.1581 0.7385 20 6 0.0012 -7.2439 0.1370 21 6 -0.5628 -6.1178 -0.4616 22 6 0.1244 -4.9162 -0.4635 23 7 -1.8255 -6.2208 -1.0627 24 6 -2.2966 -5.1846 -1.9849 25 6 -2.6006 -7.2901 -0.7790 26 8 -3.6839 -7.4149 -1.3102 27 6 -2.1141 -8.3275 0.2007 28 8 -0.6883 -8.4170 0.1373 29 1 -0.3632 -0.1118 1.0217 30 1 -0.3633 0.9406 -0.4140 31 1 -0.3633 -0.8288 -0.6075 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0303 4.4440 -0.8504 35 1 3.0425 -3.6229 0.1487 36 1 2.9038 -5.8938 1.2027 37 1 1.6807 -8.0292 1.2050 38 1 -0.3097 -4.0445 -0.9304 39 1 -1.9967 -5.4391 -3.0014 40 1 -3.3833 -5.1184 -1.9325 41 1 -1.8604 -4.2251 -1.7068 42 1 -2.4154 -8.0437 1.2090 43 1 -2.5493 -9.2950 -0.0494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338827109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:02 Heat of formation + Delta-G solvation = -99.128008 kcal Electronic energy + Delta-G solvation = -30161.809438 eV Core-core repulsion = 25786.997956 eV Total energy + Delta-G solvation = -4374.811482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.71935 -42.00469 -40.29893 -39.61308 -38.54571 -37.34204 -36.79524 -35.32536 -34.63606 -31.43517 -30.76676 -30.30381 -29.96045 -27.88849 -27.19619 -26.14847 -24.64241 -24.25585 -23.03983 -21.03146 -20.74037 -20.15670 -19.03470 -18.74733 -18.46011 -18.13312 -17.90571 -17.25396 -17.06478 -16.78577 -16.65720 -16.24191 -15.95225 -15.88661 -15.59176 -15.49615 -14.92942 -14.90071 -14.56400 -14.28003 -14.23857 -13.99206 -13.86951 -13.65334 -13.58570 -13.33151 -13.20478 -12.93698 -12.81676 -12.63980 -12.30869 -12.25739 -12.20645 -11.77857 -11.70751 -11.31865 -10.84859 -10.66226 -10.40314 -9.64747 -9.50801 -8.77161 -8.25429 -6.39567 -0.23334 0.05256 0.51114 1.14233 1.25094 1.38494 1.40109 1.41523 1.52301 2.08156 2.23071 2.36962 2.57119 2.63386 2.87075 3.05598 3.24047 3.57918 3.90069 3.98452 4.05093 4.06386 4.22969 4.30429 4.34639 4.41425 4.55252 4.65443 4.67201 4.70046 4.75422 4.86056 4.99149 5.11505 5.13924 5.20811 5.23026 5.41483 5.54521 5.68936 5.74804 5.93833 5.98590 6.22532 6.37352 6.52019 6.63557 6.69003 6.96799 7.30963 8.82370 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.002398 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.347424 B =11672.083805 C =12411.391229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.572 5.572 3 C 0.256 3.744 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.271 1.271 11 H -0.279 1.279 12 C 0.488 3.512 13 O -0.553 6.553 14 C 0.521 3.479 15 O -0.504 6.504 16 N -0.631 5.631 17 C 0.144 3.856 18 C -0.118 4.118 19 C -0.074 4.074 20 C 0.055 3.945 21 C 0.101 3.899 22 C -0.144 4.144 23 N -0.556 5.556 24 C 0.072 3.928 25 C 0.480 3.520 26 O -0.546 6.546 27 C 0.056 3.944 28 O -0.303 6.303 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.014 0.986 34 H 0.269 0.731 35 H 0.433 0.567 36 H 0.171 0.829 37 H 0.177 0.823 38 H 0.139 0.861 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.930 -24.557 4.116 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.303 5.303 3 C 0.135 3.865 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.196 1.196 11 H -0.205 1.205 12 C 0.270 3.730 13 O -0.432 6.432 14 C 0.303 3.697 15 O -0.379 6.379 16 N -0.278 5.278 17 C 0.049 3.951 18 C -0.139 4.139 19 C -0.093 4.093 20 C 0.008 3.992 21 C 0.006 3.994 22 C -0.166 4.166 23 N -0.281 5.281 24 C -0.069 4.069 25 C 0.270 3.730 26 O -0.424 6.424 27 C -0.022 4.022 28 O -0.218 6.218 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.273 0.727 36 H 0.189 0.811 37 H 0.195 0.805 38 H 0.157 0.843 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.140 0.860 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.673 -24.542 3.819 26.308 hybrid contribution 0.423 1.304 -0.979 1.685 sum -8.250 -23.238 2.840 24.822 Atomic orbital electron populations 1.22176 0.77146 1.03731 1.02945 1.48106 1.08998 1.06009 1.67183 1.19055 0.91509 0.79131 0.96759 1.21637 1.37188 1.06775 0.92663 0.92823 1.25792 0.94788 0.96272 1.01875 1.70036 1.38670 1.14812 1.32879 0.85372 0.77989 0.78318 0.79166 1.19294 1.19639 1.20480 1.20157 0.87429 0.85487 0.79949 1.90729 1.14866 1.87227 1.50411 1.20075 0.87366 0.85100 0.77139 1.90679 1.13646 1.87013 1.46595 1.43087 1.11981 1.02651 1.70109 1.17634 0.92935 0.85639 0.98893 1.21091 1.02631 0.90124 1.00017 1.20634 0.91953 0.99052 0.97656 1.18851 0.94953 0.83728 1.01667 1.17938 0.86849 0.94691 0.99904 1.20665 0.96016 0.96634 1.03292 1.45707 1.15042 1.23543 1.43819 1.21973 1.01642 0.90624 0.92662 1.22259 0.84358 0.82777 0.83612 1.90752 1.22319 1.76722 1.52563 1.23416 0.78992 1.00567 0.99207 1.86233 1.18278 1.26628 1.90637 0.91410 0.91125 0.88935 0.94795 0.96836 0.92224 0.72671 0.81117 0.80517 0.84304 0.90875 0.89779 0.89379 0.86036 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.74 9.27 127.77 1.18 3.93 16 2 N -0.57 -24.12 2.86 -852.86 -2.44 -26.55 16 3 C 0.26 13.20 5.09 85.63 0.44 13.64 16 4 C -0.54 -30.25 9.39 25.60 0.24 -30.01 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.69 5.46 84.65 0.46 1.15 16 7 N -0.92 -53.78 13.29 21.45 0.28 -53.49 16 8 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.49 19.36 7.72 87.23 0.67 20.03 16 13 O -0.55 -25.15 16.12 -3.30 -0.05 -25.20 16 14 C 0.52 15.90 7.53 87.23 0.66 16.56 16 15 O -0.50 -15.47 10.69 -3.37 -0.04 -15.51 16 16 N -0.63 -14.81 5.34 -304.74 -1.63 -16.43 16 17 C 0.14 2.91 6.35 38.20 0.24 3.15 16 18 C -0.12 -1.59 9.94 22.43 0.22 -1.37 16 19 C -0.07 -0.91 9.99 22.31 0.22 -0.69 16 20 C 0.05 0.94 6.45 22.61 0.15 1.08 16 21 C 0.10 2.10 6.38 38.13 0.24 2.34 16 22 C -0.14 -3.24 7.97 22.48 0.18 -3.06 16 23 N -0.56 -12.02 3.12 -653.66 -2.04 -14.06 16 24 C 0.07 1.43 10.23 127.77 1.31 2.74 16 25 C 0.48 10.09 7.67 87.63 0.67 10.76 16 26 O -0.55 -14.65 16.77 -3.08 -0.05 -14.70 16 27 C 0.06 0.71 7.17 71.25 0.51 1.22 16 28 O -0.30 -4.67 10.45 -94.34 -0.99 -5.66 16 29 H 0.07 2.03 8.13 -2.38 -0.02 2.01 16 30 H 0.07 2.36 8.02 -2.39 -0.02 2.34 16 31 H 0.09 2.89 5.84 -2.39 -0.01 2.87 16 32 H 0.03 1.78 8.07 -2.38 -0.02 1.76 16 33 H 0.01 0.78 7.51 -2.39 -0.02 0.76 16 34 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 35 H 0.43 8.91 8.28 -92.71 -0.77 8.14 16 36 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 38 H 0.14 3.52 4.18 -2.91 -0.01 3.51 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.69 7.49 -2.39 -0.02 1.67 16 41 H 0.09 1.70 5.95 -2.39 -0.01 1.69 16 42 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.17 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -73.58 366.24 2.80 -70.78 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.32 Total: 13.78 kcal Atomic # 6 Polarization: 34.07 SS G_CDS: 7.40 Total: 41.47 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -5.82 Total: -110.54 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -1.13 Total: -61.07 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.58 2.80 -70.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338827109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.351 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds