Wall clock time and date at job start Wed Apr 1 2020 04:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81402 * 109.46871 * 2 1 4 4 O 1.42100 * 110.54300 * 68.37593 * 3 2 1 5 5 O 1.42101 * 110.54149 * 291.62171 * 3 2 1 6 6 N 1.65605 * 104.44931 * 180.02562 * 3 2 1 7 7 C 1.46920 * 120.63437 * 89.99329 * 6 3 2 8 8 C 1.53196 * 108.77435 * 126.41584 * 7 6 3 9 9 C 1.53037 * 109.31040 * 54.63686 * 8 7 6 10 10 C 1.53040 * 109.54181 * 298.63376 * 9 8 7 11 11 H 1.09003 * 109.49938 * 301.42120 * 10 9 8 12 12 C 1.50693 * 109.50327 * 181.31898 * 10 9 8 13 13 O 1.21279 * 120.00180 * 240.16741 * 12 10 9 14 14 N 1.34780 * 120.00223 * 60.15919 * 12 10 9 15 15 C 1.46498 * 120.00083 * 180.02562 * 14 12 10 16 16 C 1.50699 * 109.46934 * 180.02562 * 15 14 12 17 17 O 1.21296 * 119.99965 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00085 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00127 * 179.97438 * 18 16 15 20 20 H 1.08012 * 120.00091 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00316 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99278 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00124 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47545 * 59.99987 * 23 21 19 25 25 H 1.48506 * 109.46962 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47134 * 300.00059 * 23 21 19 27 27 C 1.46926 * 120.62610 * 270.02424 * 6 3 2 28 28 H 1.08997 * 109.47358 * 299.99848 * 1 2 3 29 29 H 1.09000 * 109.47249 * 60.00061 * 1 2 3 30 30 H 1.09002 * 109.46912 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46672 * 240.00242 * 2 1 3 32 32 H 1.09000 * 109.47249 * 119.99939 * 2 1 3 33 33 H 1.08998 * 109.58534 * 6.63147 * 7 6 3 34 34 H 1.08999 * 109.58994 * 246.20500 * 7 6 3 35 35 H 1.08999 * 109.50112 * 174.59220 * 8 7 6 36 36 H 1.09004 * 109.49641 * 294.68461 * 8 7 6 37 37 H 1.09000 * 109.46257 * 58.65576 * 9 8 7 38 38 H 1.09003 * 109.45936 * 178.62016 * 9 8 7 39 39 H 0.96997 * 119.99343 * 0.02562 * 14 12 10 40 40 H 1.09001 * 109.47026 * 299.99875 * 15 14 12 41 41 H 1.08994 * 109.47391 * 60.00062 * 15 14 12 42 42 H 0.96996 * 119.99878 * 359.97438 * 18 16 15 43 43 H 0.97005 * 119.99335 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.58617 * 353.36694 * 27 6 3 45 45 H 1.08995 * 109.59240 * 113.79471 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.5295 1.5000 -1.2652 8 6 5.6199 2.5759 -1.2511 9 6 6.4860 2.4023 -0.0014 10 6 5.6208 2.5752 1.2491 11 1 5.1580 3.5620 1.2378 12 6 6.4806 2.4362 2.4789 13 8 6.2458 1.5634 3.2875 14 7 7.5107 3.2818 2.6801 15 6 8.3468 3.1463 3.8754 16 6 9.4188 4.2054 3.8611 17 8 9.4782 4.9959 2.9430 18 7 10.3110 4.2749 4.8689 19 6 11.2865 5.2380 4.8557 20 1 11.3399 5.9415 4.0378 21 6 12.2060 5.3100 5.8951 22 7 12.1406 4.4545 6.8904 23 14 13.5347 6.6228 5.8773 24 1 12.9029 7.9666 5.8637 25 1 14.3819 6.4859 7.0893 26 1 14.3761 6.4592 4.6647 27 6 4.5304 1.4992 1.2633 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8507 1.6786 -2.0990 34 1 4.9879 0.5165 -1.3688 35 1 6.2412 2.4760 -2.1411 36 1 5.1572 3.5627 -1.2389 37 1 6.9288 1.4063 -0.0018 38 1 7.2778 3.1515 -0.0014 39 1 7.6983 3.9800 2.0334 40 1 7.7298 3.2664 4.7659 41 1 8.8103 2.1599 3.8847 42 1 10.2628 3.6435 5.6036 43 1 12.7823 4.5050 7.6161 44 1 3.8521 1.6774 2.0977 45 1 4.9888 0.5157 1.3660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344188205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:19 Heat of formation + Delta-G solvation = -154.365382 kcal Electronic energy + Delta-G solvation = -28588.551035 eV Core-core repulsion = 24346.788232 eV Total energy + Delta-G solvation = -4241.762803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.19021 -38.50721 -37.74471 -37.47047 -36.25501 -34.52024 -33.77473 -33.60110 -32.84938 -31.56378 -31.36858 -27.80899 -25.12967 -24.91753 -24.24802 -23.69619 -21.35865 -19.96310 -19.55603 -19.07337 -18.29320 -18.07285 -17.10634 -16.75954 -16.54181 -15.79249 -15.57604 -15.35618 -15.14553 -14.70436 -14.57078 -14.54348 -14.27990 -14.16048 -13.99635 -13.60216 -13.48516 -13.26112 -12.98418 -12.96691 -12.41215 -12.37914 -12.24211 -12.20257 -12.04936 -11.93831 -11.75820 -11.64217 -11.30034 -11.17789 -11.11706 -11.03445 -10.74885 -10.52107 -10.33053 -9.72272 -9.64557 -9.31834 -8.83566 -8.65701 -8.12237 -6.53264 -3.95344 -0.14442 2.22826 2.74599 3.12542 3.20287 3.22565 3.33058 3.48017 3.71845 3.74535 4.06766 4.10243 4.27186 4.30781 4.56898 4.60216 4.68976 4.74602 4.83756 4.87420 4.99735 5.07428 5.15087 5.15798 5.21020 5.23270 5.41949 5.43553 5.52353 5.55634 5.70598 5.81808 5.86682 5.91485 5.93790 6.03837 6.05188 6.20202 6.63334 7.44080 7.74745 7.89718 8.37176 8.43695 9.02575 9.37073 9.84909 10.63469 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.029947 B = 0.001919 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.758243 B =14588.351966 C =15009.778096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.606 3.394 4 O -0.949 6.949 5 O -0.954 6.954 6 N -1.001 6.001 7 C 0.114 3.886 8 C -0.129 4.129 9 C -0.112 4.112 10 C -0.118 4.118 11 H 0.105 0.895 12 C 0.519 3.481 13 O -0.550 6.550 14 N -0.704 5.704 15 C 0.108 3.892 16 C 0.427 3.573 17 O -0.598 6.598 18 N -0.548 5.548 19 C -0.306 4.306 20 H 0.105 0.895 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.935 3.065 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.273 1.273 27 C 0.138 3.862 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.411 0.589 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.396 0.604 43 H 0.275 0.725 44 H 0.102 0.898 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.830 -11.434 -15.384 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.699 3.301 4 O -0.939 6.939 5 O -0.944 6.944 6 N -0.839 5.839 7 C -0.011 4.011 8 C -0.168 4.168 9 C -0.150 4.150 10 C -0.141 4.141 11 H 0.123 0.877 12 C 0.304 3.696 13 O -0.428 6.428 14 N -0.358 5.358 15 C -0.020 4.020 16 C 0.213 3.787 17 O -0.485 6.485 18 N -0.183 5.183 19 C -0.435 4.435 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.761 3.239 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 C 0.012 3.988 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.250 0.750 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.230 0.770 43 H 0.085 0.915 44 H 0.120 0.880 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.289 -10.748 -15.213 26.814 hybrid contribution 1.046 -0.183 0.342 1.115 sum -18.244 -10.931 -14.870 25.951 Atomic orbital electron populations 1.21515 0.90534 1.05109 1.03512 1.30567 1.07176 1.26753 1.11707 1.05212 0.72978 0.77498 0.74369 1.93617 1.82989 1.72278 1.45026 1.93587 1.83143 1.72408 1.45286 1.57752 1.24142 1.89759 1.12212 1.21534 0.95124 0.99684 0.84725 1.21853 0.97047 0.99693 0.98240 1.21525 0.97590 1.03428 0.92463 1.21588 0.96413 1.02299 0.93800 0.87737 1.20319 0.80717 0.81371 0.87156 1.90688 1.70808 1.34611 1.46681 1.45715 1.30180 1.34688 1.25188 1.20966 0.92869 0.99510 0.88608 1.19743 0.85447 0.88171 0.85371 1.90497 1.75852 1.44911 1.37194 1.41791 1.26056 1.30121 1.20323 1.19682 1.06147 1.09922 1.07792 0.87717 1.25334 0.98971 0.98305 0.95115 1.69608 1.37448 1.36126 1.10249 0.85861 0.79914 0.80434 0.77680 1.19764 1.20850 1.19785 1.21238 0.94134 0.99020 0.84361 0.90854 0.90978 0.89972 0.85106 0.84866 0.88727 0.91147 0.90045 0.90863 0.90916 0.90379 0.75032 0.89782 0.89810 0.77030 0.91518 0.88019 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.92 37.16 0.37 -0.40 16 2 C -0.63 -3.37 6.90 37.16 0.26 -3.11 16 3 S 2.61 23.26 5.45 -107.50 -0.59 22.68 16 4 O -0.95 -11.91 16.59 -57.54 -0.95 -12.87 16 5 O -0.95 -10.77 16.59 -57.54 -0.95 -11.72 16 6 N -1.00 -8.39 3.22 -113.52 -0.37 -8.75 16 7 C 0.11 0.78 6.43 -3.71 -0.02 0.75 16 8 C -0.13 -0.96 6.08 -26.61 -0.16 -1.12 16 9 C -0.11 -1.02 5.08 -26.69 -0.14 -1.16 16 10 C -0.12 -1.32 2.68 -91.65 -0.25 -1.56 16 11 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 12 C 0.52 7.64 7.16 -10.99 -0.08 7.57 16 13 O -0.55 -9.54 15.92 5.56 0.09 -9.46 16 14 N -0.70 -11.19 5.42 -61.48 -0.33 -11.53 16 15 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 16 C 0.43 9.62 7.85 -10.99 -0.09 9.53 16 17 O -0.60 -15.02 15.24 5.54 0.08 -14.94 16 18 N -0.55 -13.43 5.29 -10.96 -0.06 -13.49 16 19 C -0.31 -8.24 9.68 -14.93 -0.14 -8.39 16 20 H 0.11 2.93 7.16 -52.48 -0.38 2.55 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.89 -23.69 13.05 55.50 0.72 -22.96 16 23 Si 0.93 20.41 29.55 -169.99 -5.02 15.38 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 C 0.14 1.40 5.06 -3.71 -0.02 1.38 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.09 0.59 6.86 -51.93 -0.36 0.23 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.74 7.54 -51.93 -0.39 0.35 16 39 H 0.41 6.44 6.85 -40.82 -0.28 6.16 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.40 9.33 7.90 -40.82 -0.32 9.00 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.10 1.13 6.86 -51.93 -0.36 0.77 16 45 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -34.86 383.25 -8.70 -43.56 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.70 Total: 12.36 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -0.40 Total: 5.96 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.03 Total: -56.74 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -1.74 Total: -48.98 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 23.26 SS G_CDS: -0.59 Total: 22.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.86 -8.70 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344188205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.802 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds