Wall clock time and date at job start Wed Apr 1 2020 05:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35082 * 120.50159 * 2 1 4 4 O 1.21297 * 120.13046 * 1.61264 * 3 2 1 5 5 C 1.50751 * 119.73306 * 181.63771 * 3 2 1 6 6 O 1.42989 * 109.63654 * 328.66480 * 5 3 2 7 7 C 1.36070 * 116.82982 * 46.22170 * 6 5 3 8 8 C 1.38432 * 120.57587 * 146.82753 * 7 6 5 9 9 C 1.38213 * 119.97577 * 180.33530 * 8 7 6 10 10 C 1.38946 * 120.17544 * 0.25461 * 9 8 7 11 11 N 1.39853 * 119.97849 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99857 * 213.36891 * 11 10 9 13 13 O 1.21383 * 120.00220 * 5.28011 * 12 11 10 14 14 C 1.49335 * 119.99911 * 185.27512 * 12 11 10 15 15 O 1.21363 * 120.00327 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99911 * 179.97438 * 14 12 11 17 17 C 1.46498 * 119.99877 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.46939 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.46932 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00263 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99716 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99706 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00242 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47316 * 90.00036 * 23 21 19 25 25 H 1.48501 * 109.47099 * 210.00076 * 23 21 19 26 26 H 1.48504 * 109.46785 * 330.00116 * 23 21 19 27 27 C 1.38924 * 120.03710 * 359.97438 * 10 9 8 28 28 C 1.38420 * 119.76864 * 0.02562 * 27 10 9 29 29 H 1.09002 * 109.47045 * 270.02650 * 1 2 3 30 30 H 1.09004 * 109.46784 * 30.02176 * 1 2 3 31 31 H 1.09002 * 109.47336 * 150.02187 * 1 2 3 32 32 H 1.08999 * 109.44849 * 88.72049 * 5 3 2 33 33 H 1.09006 * 109.44090 * 208.64655 * 5 3 2 34 34 H 1.07995 * 120.00869 * 0.62064 * 8 7 6 35 35 H 1.07998 * 119.91122 * 180.27543 * 9 8 7 36 36 H 0.97005 * 120.00187 * 33.37073 * 11 10 9 37 37 H 0.97000 * 119.99832 * 0.02562 * 16 14 12 38 38 H 1.09000 * 109.47411 * 300.00439 * 17 16 14 39 39 H 1.09003 * 109.46794 * 60.00600 * 17 16 14 40 40 H 1.09000 * 109.47411 * 300.00419 * 18 17 16 41 41 H 1.08994 * 109.47088 * 60.00396 * 18 17 16 42 42 H 0.97002 * 119.99608 * 180.02562 * 22 21 19 43 43 H 1.08002 * 120.11513 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1507 1.1639 0.0000 4 8 1.5562 2.2208 0.0295 5 6 3.6576 1.1439 -0.0374 6 8 4.1395 -0.0227 0.6344 7 6 3.5313 -1.2014 0.3310 8 6 4.2493 -2.3850 0.3319 9 6 3.6206 -3.5743 0.0150 10 6 2.2697 -3.5852 -0.3100 11 7 1.6378 -4.7910 -0.6305 12 6 0.6414 -4.8092 -1.5379 13 8 0.3566 -3.7986 -2.1469 14 6 -0.1121 -6.0728 -1.7942 15 8 0.1723 -7.0832 -1.1851 16 7 -1.1088 -6.0908 -2.7012 17 6 -1.8477 -7.3305 -2.9530 18 6 -2.9163 -7.0798 -4.0190 19 6 -3.6767 -8.3550 -4.2775 20 1 -3.4235 -9.2541 -3.7355 21 6 -4.6958 -8.3737 -5.2061 22 7 -5.3598 -9.4864 -5.4314 23 14 -5.1333 -6.8187 -6.1442 24 1 -4.3319 -6.7516 -7.3925 25 1 -6.5787 -6.8359 -6.4843 26 1 -4.8370 -5.6323 -5.3015 27 6 1.5465 -2.3991 -0.3168 28 6 2.1766 -1.2082 0.0007 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 3.9947 1.1311 -1.0739 33 1 4.0446 2.0339 0.4590 34 1 5.2993 -2.3796 0.5846 35 1 4.1807 -4.4977 0.0203 36 1 1.9166 -5.6142 -0.1997 37 1 -1.3365 -5.2832 -3.1878 38 1 -1.1589 -8.0993 -3.3033 39 1 -2.3247 -7.6628 -2.0310 40 1 -3.6051 -6.3109 -3.6692 41 1 -2.4389 -6.7478 -4.9409 42 1 -6.0764 -9.4996 -6.0850 43 1 0.4963 -2.4062 -0.5688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344406870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:07 Heat of formation + Delta-G solvation = -93.994978 kcal Electronic energy + Delta-G solvation = -29247.696659 eV Core-core repulsion = 24873.107762 eV Total energy + Delta-G solvation = -4374.588897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05041 -41.03917 -39.45588 -38.79755 -37.83538 -36.44692 -35.51280 -34.52371 -32.89047 -30.82479 -30.40383 -30.13051 -29.54744 -26.86357 -25.88354 -24.24428 -23.72474 -22.67314 -21.00394 -20.51416 -20.10466 -19.53938 -18.72912 -17.76007 -17.56223 -17.21728 -16.89378 -16.33173 -16.14760 -15.97183 -15.49233 -15.24865 -15.12205 -14.97018 -14.80754 -14.25092 -14.24014 -14.06903 -13.82367 -13.62614 -13.37181 -13.29364 -12.95439 -12.67878 -12.59239 -12.24806 -11.83665 -11.65670 -11.58427 -11.32791 -11.07201 -10.62250 -10.52544 -10.39833 -10.20128 -10.02738 -9.65477 -9.41131 -8.93165 -8.85950 -8.67519 -8.15563 -6.17888 -4.19113 0.45210 0.69046 1.33097 1.81567 2.02061 2.14862 2.77927 3.02922 3.21801 3.26718 3.30315 3.30851 3.44369 3.53561 4.13847 4.32244 4.38052 4.42389 4.52200 4.60743 4.64445 4.78367 4.83557 4.98110 5.12402 5.15005 5.24497 5.30685 5.44601 5.71347 5.75648 5.85394 5.86055 6.00129 6.15634 6.32499 6.37800 6.38801 6.67588 6.83021 6.96144 7.09730 7.21849 7.30901 7.53675 7.59949 8.00199 8.35215 8.85058 9.41711 10.94733 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002083 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.909575 B =13437.733324 C =14824.551827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.550 5.550 3 C 0.487 3.513 4 O -0.509 6.509 5 C 0.052 3.948 6 O -0.302 6.302 7 C 0.061 3.939 8 C -0.083 4.083 9 C -0.131 4.131 10 C 0.160 3.840 11 N -0.646 5.646 12 C 0.510 3.490 13 O -0.500 6.500 14 C 0.501 3.499 15 O -0.523 6.523 16 N -0.687 5.687 17 C 0.126 3.874 18 C -0.024 4.024 19 C -0.526 4.526 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.896 5.896 23 Si 0.881 3.119 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.265 1.265 27 C -0.128 4.128 28 C 0.116 3.884 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.427 0.573 37 H 0.410 0.590 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.266 0.734 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.050 18.670 12.905 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.276 5.276 3 C 0.276 3.724 4 O -0.384 6.384 5 C -0.026 4.026 6 O -0.216 6.216 7 C 0.014 3.986 8 C -0.103 4.103 9 C -0.152 4.152 10 C 0.065 3.935 11 N -0.294 5.294 12 C 0.293 3.707 13 O -0.373 6.373 14 C 0.280 3.720 15 O -0.400 6.400 16 N -0.338 5.338 17 C 0.005 3.995 18 C -0.061 4.061 19 C -0.564 4.564 20 H 0.095 0.905 21 C -0.132 4.132 22 N -0.534 5.534 23 Si 0.708 3.292 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.190 1.190 27 C -0.151 4.151 28 C 0.021 3.979 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.266 0.734 37 H 0.245 0.755 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 20.565 19.215 12.902 30.962 hybrid contribution -0.628 0.693 -0.807 1.235 sum 19.937 19.908 12.095 30.661 Atomic orbital electron populations 1.21961 0.76782 1.04703 1.03291 1.45564 1.07974 1.04195 1.69820 1.21590 0.91362 0.83339 0.76147 1.90782 1.70799 1.29449 1.47356 1.23199 0.89074 0.89210 1.01085 1.86238 1.58623 1.13183 1.63565 1.18599 0.88973 0.87070 1.03966 1.20293 1.00209 0.89013 1.00784 1.20796 0.91936 0.98798 1.03701 1.17390 0.91312 0.85436 0.99391 1.43190 1.34843 1.10092 1.41251 1.20687 0.80671 0.89991 0.79400 1.90778 1.64976 1.34851 1.46723 1.19667 0.82299 0.87881 0.82169 1.90782 1.66640 1.33976 1.48623 1.46225 1.32817 1.16081 1.38669 1.21772 0.93920 0.83232 1.00558 1.19828 0.93699 0.99095 0.93509 1.20855 1.16616 0.95436 1.23480 0.90501 1.24992 0.95627 0.96153 0.96415 1.69898 1.22537 1.26528 1.34408 0.86766 0.77821 0.84032 0.80573 1.20144 1.21193 1.18997 1.20622 1.01664 0.89559 1.03254 1.17831 0.90593 0.86520 1.02935 0.91270 0.89378 0.89579 0.88209 0.83660 0.83560 0.83979 0.73411 0.75494 0.91050 0.91029 0.95714 0.96130 0.92447 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.23 59.85 0.61 1.24 16 2 N -0.55 -5.45 3.12 -120.59 -0.38 -5.83 16 3 C 0.49 4.87 7.67 -10.82 -0.08 4.79 16 4 O -0.51 -6.46 16.77 5.54 0.09 -6.36 16 5 C 0.05 0.35 7.17 36.03 0.26 0.61 16 6 O -0.30 -2.44 10.45 -19.96 -0.21 -2.65 16 7 C 0.06 0.52 6.45 -39.06 -0.25 0.27 16 8 C -0.08 -0.56 9.99 -39.52 -0.39 -0.95 16 9 C -0.13 -0.88 9.95 -39.33 -0.39 -1.27 16 10 C 0.16 1.44 6.28 -83.68 -0.53 0.91 16 11 N -0.65 -6.09 5.33 -10.27 -0.05 -6.14 16 12 C 0.51 6.23 7.62 -11.64 -0.09 6.14 16 13 O -0.50 -6.82 14.16 5.47 0.08 -6.74 16 14 C 0.50 7.25 7.89 -11.64 -0.09 7.15 16 15 O -0.52 -8.57 16.48 5.49 0.09 -8.48 16 16 N -0.69 -10.59 5.55 -60.77 -0.34 -10.93 16 17 C 0.13 2.35 5.61 -4.04 -0.02 2.33 16 18 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 19 C -0.53 -14.12 9.66 -34.44 -0.33 -14.45 16 20 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -26.59 13.96 55.43 0.77 -25.81 16 23 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 27 C -0.13 -1.28 7.95 -39.26 -0.31 -1.59 16 28 C 0.12 1.12 6.38 -83.51 -0.53 0.59 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.77 7.49 -51.93 -0.39 0.38 16 31 H 0.09 0.69 5.95 -51.93 -0.31 0.38 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.15 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.43 3.27 8.30 -40.82 -0.34 2.93 16 37 H 0.41 5.78 7.94 -40.82 -0.32 5.46 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 41 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.15 1.60 4.47 -52.49 -0.23 1.36 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -33.64 368.57 -6.34 -39.98 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.91 Total: 4.46 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -2.37 Total: 7.01 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.01 Total: -48.71 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.05 Total: -24.23 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.64 -6.34 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344406870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.015 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds