Wall clock time and date at job start Wed Apr 1 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47101 * 311.63554 * 3 2 1 5 5 C 1.36936 * 119.99852 * 263.74744 * 4 3 2 6 6 H 1.08003 * 120.00298 * 210.80335 * 5 4 3 7 7 C 1.38812 * 119.99993 * 30.81382 * 5 4 3 8 8 N 1.31617 * 120.00079 * 353.69731 * 7 5 4 9 9 Si 1.86800 * 120.00017 * 173.69906 * 7 5 4 10 10 H 1.48505 * 109.46949 * 89.99908 * 9 7 5 11 11 H 1.48500 * 109.47031 * 209.99590 * 9 7 5 12 12 H 1.48498 * 109.47101 * 329.99798 * 9 7 5 13 13 C 1.46497 * 119.99906 * 83.75269 * 4 3 2 14 14 C 1.52998 * 109.47046 * 269.99814 * 13 4 3 15 15 C 1.50702 * 109.47328 * 180.02562 * 14 13 4 16 16 O 1.21299 * 119.99547 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00207 * 180.27203 * 15 14 13 18 18 C 1.40114 * 119.99746 * 174.91052 * 17 15 14 19 19 C 1.38868 * 120.01760 * 35.72228 * 18 17 15 20 20 C 1.38064 * 119.98145 * 179.97438 * 19 18 17 21 21 C 1.38742 * 120.02038 * 359.97438 * 20 19 18 22 22 O 1.35961 * 119.98512 * 180.02562 * 21 20 19 23 23 C 1.42901 * 117.00158 * 359.97438 * 22 21 20 24 24 C 1.38705 * 120.02430 * 0.02562 * 21 20 19 25 25 C 1.38101 * 120.01712 * 359.74620 * 24 21 20 26 26 N 1.48013 * 120.00746 * 180.25749 * 25 24 21 27 27 O 1.21798 * 120.00354 * 5.93913 * 26 25 24 28 28 O 1.21808 * 120.00023 * 185.94629 * 26 25 24 29 29 H 4.40634 * 5.51493 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.47309 * 191.63716 * 3 2 1 31 31 H 1.09000 * 109.47366 * 71.63626 * 3 2 1 32 32 H 0.97000 * 120.00258 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47343 * 149.99786 * 13 4 3 34 34 H 1.09000 * 109.47394 * 29.99652 * 13 4 3 35 35 H 1.08997 * 109.47189 * 60.00494 * 14 13 4 36 36 H 1.08997 * 109.47319 * 299.99853 * 14 13 4 37 37 H 0.96996 * 119.99865 * 354.91502 * 17 15 14 38 38 H 1.07995 * 120.00352 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.98813 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46905 * 299.99807 * 23 22 21 41 41 H 1.08992 * 109.47020 * 60.00125 * 23 22 21 42 42 H 1.09001 * 109.47418 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.98317 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9168 1.0323 5 6 3.4845 -0.4358 2.2658 6 1 4.2623 -0.9233 2.8349 7 6 2.8393 0.6782 2.7849 8 7 1.9806 1.3461 2.0440 9 14 3.1896 1.2294 4.5350 10 1 4.3196 2.1930 4.5336 11 1 1.9818 1.8839 5.0990 12 1 3.5460 0.0497 5.3636 13 6 3.2494 -2.3487 0.7449 14 6 1.9375 -3.0481 1.1064 15 6 2.0555 -4.5212 0.8114 16 8 3.0878 -4.9678 0.3571 17 7 1.0126 -5.3415 1.0477 18 6 1.0838 -6.6903 0.6749 19 6 2.2880 -7.3751 0.7716 20 6 2.3572 -8.7043 0.4046 21 6 1.2239 -9.3560 -0.0601 22 8 1.2927 -10.6651 -0.4208 23 6 2.5636 -11.3065 -0.2960 24 6 0.0208 -8.6725 -0.1569 25 6 -0.0509 -7.3442 0.2143 26 7 -1.3361 -6.6167 0.1164 27 8 -2.3528 -7.2145 -0.1876 28 8 -1.3771 -5.4199 0.3397 29 1 -1.0498 -0.0004 0.0001 30 1 3.0089 1.0073 0.2073 31 1 3.0095 -0.3229 -0.9753 32 1 1.5299 2.1247 2.4066 33 1 4.0620 -2.7737 1.3342 34 1 3.4567 -2.4910 -0.3157 35 1 1.1249 -2.6232 0.5172 36 1 1.7302 -2.9058 2.1670 37 1 0.2127 -4.9982 1.4756 38 1 3.1701 -6.8681 1.1337 39 1 3.2938 -9.2369 0.4793 40 1 3.2933 -10.7917 -0.9211 41 1 2.8874 -11.2719 0.7441 42 1 2.4796 -12.3449 -0.6164 43 1 -0.8610 -9.1806 -0.5183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491617455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:41 Heat of formation + Delta-G solvation = 47.461822 kcal Electronic energy + Delta-G solvation = -29966.045272 eV Core-core repulsion = 25597.590402 eV Total energy + Delta-G solvation = -4368.454870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.46405 -40.89665 -39.93052 -37.87649 -36.77527 -36.15787 -34.59190 -32.35114 -32.10985 -31.52633 -30.44026 -29.31041 -27.62628 -26.55003 -26.02884 -24.63155 -23.44687 -22.44813 -21.17512 -20.08709 -19.72455 -18.87507 -18.02027 -17.63375 -17.46269 -17.41594 -17.23830 -16.58652 -16.30475 -16.09704 -15.34674 -14.92352 -14.64970 -14.45446 -14.08662 -13.80537 -13.43531 -13.36926 -13.22230 -13.08008 -12.87625 -12.31767 -11.92310 -11.79915 -11.69103 -11.49852 -11.34049 -11.30186 -11.26362 -11.07325 -10.91939 -10.39907 -10.32703 -10.29512 -10.08555 -9.98209 -9.72332 -9.08756 -8.72698 -8.36617 -8.30029 -6.91379 -5.85692 -3.39559 -0.42487 0.65053 1.08303 1.14446 2.53599 2.63232 2.83496 3.05727 3.32775 3.40444 3.41177 4.03599 4.17291 4.19482 4.28539 4.39569 4.50336 4.51531 4.63623 4.64854 4.80080 4.96753 5.08082 5.22671 5.32626 5.46036 5.54709 5.66958 5.74408 5.81219 5.83970 6.00216 6.14063 6.26827 6.35712 6.63018 6.68310 6.73958 6.90392 7.20595 7.33448 7.48400 7.50992 7.72194 8.05837 8.33825 9.10128 9.20961 9.70164 10.21837 11.17198 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.002610 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.490426 B =10726.114328 C =11608.029263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.088 4.088 3 C 0.265 3.735 4 N -0.586 5.586 5 C -0.272 4.272 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.889 5.889 9 Si 0.902 3.098 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.168 3.832 14 C -0.158 4.158 15 C 0.524 3.476 16 O -0.525 6.525 17 N -0.673 5.673 18 C 0.198 3.802 19 C -0.088 4.088 20 C -0.133 4.133 21 C 0.108 3.892 22 O -0.310 6.310 23 C 0.024 3.976 24 C -0.076 4.076 25 C -0.045 4.045 26 N 0.038 4.962 27 O -0.153 6.153 28 O -0.164 6.164 29 H 0.189 0.811 30 H 0.105 0.895 31 H 0.031 0.969 32 H 0.257 0.743 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.425 0.575 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.105 0.895 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 -22.673 -3.770 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 C -0.091 4.091 3 C 0.140 3.860 4 N -0.305 5.305 5 C -0.401 4.401 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.531 5.531 9 Si 0.731 3.269 10 H -0.213 1.213 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.040 3.960 14 C -0.201 4.201 15 C 0.315 3.685 16 O -0.400 6.400 17 N -0.324 5.324 18 C 0.098 3.902 19 C -0.108 4.108 20 C -0.153 4.153 21 C 0.061 3.939 22 O -0.223 6.223 23 C -0.071 4.071 24 C -0.096 4.096 25 C -0.132 4.132 26 N 0.555 4.445 27 O -0.370 6.370 28 O -0.374 6.374 29 H 0.207 0.793 30 H 0.123 0.877 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.267 0.733 38 H 0.186 0.814 39 H 0.167 0.833 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.124 0.876 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.897 -23.108 -4.048 23.477 hybrid contribution -1.009 0.658 1.382 1.833 sum -0.111 -22.451 -2.666 22.609 Atomic orbital electron populations 1.24187 0.95350 1.06146 1.07243 1.24296 0.95258 0.95253 0.94307 1.17897 0.82773 0.96769 0.88555 1.44024 1.74743 0.99950 1.11792 1.19166 1.14983 1.12090 0.93823 0.91020 1.25296 0.96402 0.99081 0.97729 1.69938 1.29144 1.19198 1.34807 0.86321 0.77174 0.78420 0.84985 1.21335 1.21578 1.20462 1.20705 0.92453 0.84307 0.98559 1.22701 1.05730 0.86753 1.04922 1.21924 0.81612 0.89856 0.75105 1.90631 1.28511 1.77627 1.43266 1.44507 1.21924 1.05884 1.60054 1.17575 0.92071 0.85553 0.94958 1.21291 0.97541 0.92834 0.99161 1.21644 0.98521 0.95346 0.99754 1.18475 0.92861 0.84647 0.97914 1.86104 1.34353 1.20220 1.81628 1.23183 0.83657 0.98301 1.01955 1.19799 0.98649 0.90805 1.00381 1.20562 0.84213 0.94117 1.14312 1.43368 1.02283 1.00970 0.97923 1.94536 1.23275 1.69429 1.49810 1.94486 1.92333 0.97178 1.53423 0.79344 0.87722 0.95159 0.93221 0.92600 0.93495 0.88332 0.88232 0.73288 0.81449 0.83264 0.92142 0.92203 0.87624 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.90 19.25 29.55 0.57 -6.33 16 2 C -0.09 -2.08 10.34 -37.12 -0.38 -2.46 16 3 C 0.26 6.16 5.44 -6.83 -0.04 6.12 16 4 N -0.59 -13.78 2.50 -176.58 -0.44 -14.22 16 5 C -0.27 -6.96 9.59 -15.06 -0.14 -7.10 16 6 H 0.07 1.81 7.84 -52.48 -0.41 1.40 16 7 C 0.01 0.39 5.36 -17.43 -0.09 0.30 16 8 N -0.89 -24.19 8.87 55.49 0.49 -23.69 16 9 Si 0.90 20.82 29.56 -169.99 -5.02 15.80 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 13 C 0.17 3.35 4.98 -4.04 -0.02 3.33 16 14 C -0.16 -2.83 5.88 -27.88 -0.16 -2.99 16 15 C 0.52 8.35 7.67 -10.98 -0.08 8.26 16 16 O -0.53 -9.07 13.45 5.54 0.07 -9.00 16 17 N -0.67 -9.32 4.54 -9.82 -0.04 -9.37 16 18 C 0.20 2.53 6.28 -83.62 -0.53 2.01 16 19 C -0.09 -0.97 8.69 -39.41 -0.34 -1.31 16 20 C -0.13 -1.13 9.03 -39.46 -0.36 -1.48 16 21 C 0.11 0.98 6.69 -39.22 -0.26 0.72 16 22 O -0.31 -2.46 10.50 -19.62 -0.21 -2.66 16 23 C 0.02 0.10 9.81 101.05 0.99 1.09 16 24 C -0.08 -0.79 9.49 -39.46 -0.37 -1.17 16 25 C -0.04 -0.56 6.86 -79.78 -0.55 -1.11 16 26 N 0.04 0.53 4.45 34.04 0.15 0.68 16 27 O -0.15 -2.18 18.46 -29.46 -0.54 -2.73 16 28 O -0.16 -2.50 16.03 -29.46 -0.47 -2.97 16 29 H 0.19 3.59 7.80 -54.10 -0.42 3.17 16 30 H 0.11 2.66 6.54 -51.93 -0.34 2.32 16 31 H 0.03 0.63 7.98 -51.93 -0.41 0.22 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.06 1.12 8.00 -51.93 -0.42 0.70 16 34 H 0.05 0.91 7.91 -51.93 -0.41 0.50 16 35 H 0.10 1.86 7.18 -51.93 -0.37 1.49 16 36 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 37 H 0.42 5.60 6.55 -40.82 -0.27 5.33 16 38 H 0.17 1.97 6.26 -52.49 -0.33 1.64 16 39 H 0.15 0.81 6.29 -52.49 -0.33 0.48 16 40 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 41 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 42 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.16 1.49 7.62 -52.49 -0.40 1.09 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -30.48 374.93 -7.03 -37.50 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -4.89 Total: 7.13 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.77 Total: -2.13 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.16 Total: -46.60 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.15 Total: -17.36 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.48 -7.03 -37.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491617455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.966 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds