Wall clock time and date at job start Wed Apr 1 2020 04:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47297 * 2 1 4 4 C 1.46499 * 120.00273 * 275.00527 * 3 2 1 5 5 C 1.50699 * 109.46777 * 274.99950 * 4 3 2 6 6 H 1.08000 * 120.00230 * 359.97438 * 5 4 3 7 7 C 1.37889 * 119.99798 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99925 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99952 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46886 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46828 * 119.99920 * 9 7 5 12 12 H 1.48495 * 109.47080 * 240.00354 * 9 7 5 13 13 S 1.65603 * 119.99628 * 95.00245 * 3 2 1 14 14 O 1.42103 * 106.39748 * 156.46393 * 13 3 2 15 15 O 1.42094 * 106.40386 * 23.53992 * 13 3 2 16 16 N 1.65599 * 107.21672 * 269.99741 * 13 3 2 17 17 C 1.46987 * 120.68167 * 90.00345 * 16 13 3 18 18 C 1.53281 * 108.59695 * 124.51737 * 17 16 13 19 19 N 1.47564 * 108.61098 * 50.05559 * 18 17 16 20 20 C 1.34194 * 118.34154 * 125.04152 * 19 18 17 21 21 O 1.21509 * 118.93838 * 357.22417 * 20 19 18 22 22 O 1.34482 * 122.14818 * 177.19254 * 20 19 18 23 23 C 1.45649 * 115.49004 * 335.38352 * 22 20 19 24 24 C 1.52965 * 108.03076 * 54.20298 * 23 22 20 25 25 C 1.45998 * 118.41894 * 304.64860 * 19 18 17 26 26 H 1.08993 * 108.72713 * 297.25714 * 25 19 18 27 27 C 1.46946 * 120.68915 * 269.97951 * 16 13 3 28 28 H 1.09004 * 109.46619 * 299.99867 * 1 2 3 29 29 H 1.09001 * 109.46836 * 59.99378 * 1 2 3 30 30 H 1.08997 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46940 * 240.00838 * 2 1 3 32 32 H 1.08993 * 109.47335 * 120.00243 * 2 1 3 33 33 H 1.09005 * 109.47460 * 34.99651 * 4 3 2 34 34 H 1.08992 * 109.47249 * 155.00110 * 4 3 2 35 35 H 0.96992 * 120.00149 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.61799 * 4.78501 * 17 16 13 37 37 H 1.08999 * 109.61462 * 244.25187 * 17 16 13 38 38 H 1.08994 * 109.61700 * 290.31206 * 18 17 16 39 39 H 1.09004 * 109.75619 * 169.87273 * 18 17 16 40 40 H 1.09002 * 109.76067 * 294.55242 * 23 22 20 41 41 H 1.08997 * 109.75837 * 173.84839 * 23 22 20 42 42 H 1.08997 * 109.30345 * 62.26415 * 24 23 22 43 43 H 1.09000 * 109.30069 * 181.64509 * 24 23 22 44 44 H 1.09003 * 109.59971 * 114.92957 * 27 16 13 45 45 H 1.09003 * 109.59902 * 354.45504 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1088 -1.2638 5 6 3.4948 1.7889 -1.8823 6 1 4.1724 1.1117 -1.3836 7 6 3.8525 2.3607 -3.0849 8 7 3.0276 3.1857 -3.6919 9 14 5.5094 1.9648 -3.8512 10 1 6.2463 1.0185 -2.9755 11 1 5.3026 1.3466 -5.1855 12 1 6.2968 3.2148 -4.0014 13 16 2.4123 2.1201 1.4288 14 8 3.3285 3.1570 1.1049 15 8 2.7097 1.0798 2.3499 16 7 1.0433 2.8642 1.9895 17 6 0.1102 2.1506 2.8732 18 6 -0.0766 2.9731 4.1531 19 7 -0.3929 4.3645 3.7768 20 6 -1.5106 4.9194 4.2702 21 8 -2.2454 4.2446 4.9639 22 8 -1.8440 6.1985 4.0225 23 6 -0.7343 7.0835 3.6957 24 6 0.0365 6.4651 2.5282 25 6 0.5295 5.0722 2.8937 26 1 1.4935 5.1623 3.3943 27 6 0.7365 4.2514 1.6145 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3617 1.8099 -1.9453 34 1 2.0923 3.1803 -1.0755 35 1 3.2793 3.5883 -4.5377 36 1 0.5194 1.1719 3.1236 37 1 -0.8500 2.0313 2.3714 38 1 0.8423 2.9522 4.7388 39 1 -0.8950 2.5582 4.7415 40 1 -0.0768 7.1843 4.5592 41 1 -1.1165 8.0627 3.4074 42 1 -0.6179 6.3991 1.6590 43 1 0.8905 7.0973 2.2852 44 1 -0.1727 4.2752 1.0136 45 1 1.5662 4.6678 1.0431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495644641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:37 Heat of formation + Delta-G solvation = -137.423464 kcal Electronic energy + Delta-G solvation = -30962.976846 eV Core-core repulsion = 26721.948699 eV Total energy + Delta-G solvation = -4241.028146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.35101 -38.15946 -37.49337 -36.85649 -36.11740 -35.31080 -34.31321 -33.03990 -32.73434 -30.18289 -29.96589 -27.23955 -26.65217 -25.09145 -23.22647 -23.08518 -22.28695 -21.74202 -19.85853 -19.03103 -17.99832 -17.39468 -17.11707 -16.88269 -16.32398 -16.30641 -16.07246 -15.41987 -15.03058 -14.93345 -14.57863 -14.46962 -14.22892 -13.84784 -13.74149 -13.44527 -13.06603 -12.72920 -12.53392 -12.49254 -12.16507 -12.02255 -11.94245 -11.90526 -11.75870 -11.55859 -11.49172 -11.26452 -11.12017 -11.06046 -10.94987 -10.83040 -10.56208 -10.46147 -10.40318 -10.06971 -9.81315 -9.65838 -8.71229 -8.50528 -8.14704 -6.13222 -4.17076 1.01069 2.26654 2.47223 3.22404 3.26223 3.28078 3.34191 3.39673 3.89120 4.10423 4.22842 4.38988 4.50335 4.56464 4.67862 4.80899 4.86794 4.97948 5.04219 5.11780 5.21094 5.23470 5.28507 5.37358 5.47806 5.51221 5.60722 5.65976 5.68437 5.72923 5.88744 5.93489 5.97445 6.22572 6.27830 6.44227 6.53016 6.61677 7.15387 7.32768 7.46620 7.53833 7.84602 7.86397 8.13461 8.85757 9.48619 10.95292 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.003666 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.389459 B = 7635.543016 C = 8461.832141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.989 5.989 4 C 0.259 3.741 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.777 3.223 14 O -0.960 6.960 15 O -0.992 6.992 16 N -1.012 6.012 17 C 0.106 3.894 18 C 0.108 3.892 19 N -0.610 5.610 20 C 0.654 3.346 21 O -0.536 6.536 22 O -0.344 6.344 23 C 0.063 3.937 24 C -0.168 4.168 25 C 0.126 3.874 26 H 0.086 0.914 27 C 0.113 3.887 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 4.298 12.248 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.010 4.010 3 N -0.831 5.831 4 C 0.137 3.863 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 S 2.786 3.214 14 O -0.944 6.944 15 O -0.976 6.976 16 N -0.849 5.849 17 C -0.021 4.021 18 C -0.015 4.015 19 N -0.356 5.356 20 C 0.409 3.591 21 O -0.421 6.421 22 O -0.256 6.256 23 C -0.011 4.011 24 C -0.206 4.206 25 C 0.020 3.980 26 H 0.104 0.896 27 C -0.014 4.014 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.093 0.907 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.467 4.238 12.838 15.445 hybrid contribution 0.733 -0.036 -0.996 1.237 sum -6.735 4.202 11.843 14.257 Atomic orbital electron populations 1.22274 0.97164 1.01528 1.02075 1.21161 0.93109 0.83134 1.03576 1.57762 1.80775 1.21424 1.23108 1.19021 0.97440 0.90910 0.78931 1.21524 1.02029 1.27697 1.05535 0.92144 1.24919 0.97364 0.94800 0.96834 1.69917 1.36046 1.30289 1.17208 0.86473 0.83849 0.78372 0.78957 1.19631 1.20942 1.20798 1.02158 0.73167 0.73188 0.72846 1.93617 1.58946 1.57690 1.84115 1.93517 1.83092 1.57563 1.63453 1.58529 1.42817 1.21625 1.61964 1.21781 0.94491 0.95830 0.89990 1.22156 1.02916 0.79393 0.97037 1.47479 1.23325 1.15429 1.49415 1.18002 0.80995 0.81327 0.78808 1.90960 1.51611 1.59125 1.40375 1.86940 1.35869 1.18483 1.84268 1.23340 0.87199 0.92983 0.97576 1.22280 1.03075 0.95296 0.99946 1.21247 0.93220 0.91409 0.92084 0.89564 1.21855 1.03668 0.80872 0.95037 0.93368 0.91962 0.92137 0.89652 0.90619 0.94674 0.94731 0.92729 0.87596 0.90761 0.90412 0.87049 0.90552 0.86319 0.88931 0.87219 0.90698 0.86931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.12 1.91 6.40 -4.04 -0.03 1.89 16 3 N -0.99 -19.19 2.82 -115.66 -0.33 -19.51 16 4 C 0.26 6.09 5.10 -5.19 -0.03 6.06 16 5 C -0.53 -14.22 9.38 -34.44 -0.32 -14.55 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -25.08 13.29 55.43 0.74 -24.35 16 9 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 S 2.78 51.03 6.10 -107.50 -0.66 50.38 16 14 O -0.96 -20.99 15.71 -57.17 -0.90 -21.89 16 15 O -0.99 -19.05 15.30 -57.17 -0.87 -19.92 16 16 N -1.01 -14.03 3.33 -113.29 -0.38 -14.41 16 17 C 0.11 1.23 5.61 -3.63 -0.02 1.21 16 18 C 0.11 1.20 6.51 -3.31 -0.02 1.18 16 19 N -0.61 -7.04 2.94 -171.67 -0.50 -7.55 16 20 C 0.65 8.82 8.30 53.79 0.45 9.26 16 21 O -0.54 -8.91 16.25 -19.36 -0.31 -9.23 16 22 O -0.34 -4.07 10.58 -39.97 -0.42 -4.49 16 23 C 0.06 0.45 7.15 37.14 0.27 0.71 16 24 C -0.17 -1.20 5.65 -27.15 -0.15 -1.36 16 25 C 0.13 1.27 3.19 -68.40 -0.22 1.05 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 C 0.11 1.38 5.85 -3.59 -0.02 1.35 16 28 H 0.05 0.58 6.51 -51.93 -0.34 0.24 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 32 H 0.08 1.17 6.91 -51.93 -0.36 0.82 16 33 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.03 0.85 7.61 -51.93 -0.40 0.46 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.11 1.19 6.94 -51.93 -0.36 0.83 16 37 H 0.07 0.81 7.61 -51.93 -0.40 0.41 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 1.23 6.73 -51.93 -0.35 0.88 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.67 7.77 -51.93 -0.40 0.27 16 43 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 45 H 0.11 1.50 6.93 -51.93 -0.36 1.14 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -34.85 370.30 -9.61 -44.46 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.72 Total: -1.75 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 0.19 Total: 6.53 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -0.47 Total: -65.81 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -2.51 Total: -55.54 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 51.03 SS G_CDS: -0.66 Total: 50.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.85 -9.61 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495644641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.965 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds