Wall clock time and date at job start Wed Apr 1 2020 04:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47297 * 2 1 4 4 C 1.46499 * 120.00273 * 275.00527 * 3 2 1 5 5 C 1.50699 * 109.46777 * 274.99950 * 4 3 2 6 6 H 1.08000 * 120.00230 * 359.97438 * 5 4 3 7 7 C 1.37889 * 119.99798 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99925 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99952 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46886 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46828 * 119.99920 * 9 7 5 12 12 H 1.48495 * 109.47080 * 240.00354 * 9 7 5 13 13 S 1.65603 * 119.99628 * 95.00245 * 3 2 1 14 14 O 1.42103 * 106.39748 * 156.46393 * 13 3 2 15 15 O 1.42094 * 106.40386 * 23.53992 * 13 3 2 16 16 N 1.65599 * 107.21672 * 269.99741 * 13 3 2 17 17 C 1.46987 * 120.68167 * 90.00345 * 16 13 3 18 18 C 1.53281 * 108.59695 * 124.51737 * 17 16 13 19 19 N 1.47564 * 108.61098 * 50.05559 * 18 17 16 20 20 C 1.34194 * 118.34154 * 125.04152 * 19 18 17 21 21 O 1.21509 * 118.93838 * 357.22417 * 20 19 18 22 22 O 1.34482 * 122.14818 * 177.19254 * 20 19 18 23 23 C 1.45649 * 115.49004 * 335.38352 * 22 20 19 24 24 C 1.52965 * 108.03076 * 54.20298 * 23 22 20 25 25 C 1.45998 * 118.41894 * 304.64860 * 19 18 17 26 26 H 1.08993 * 108.72713 * 297.25714 * 25 19 18 27 27 C 1.46946 * 120.68915 * 269.97951 * 16 13 3 28 28 H 1.09004 * 109.46619 * 299.99867 * 1 2 3 29 29 H 1.09001 * 109.46836 * 59.99378 * 1 2 3 30 30 H 1.08997 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46940 * 240.00838 * 2 1 3 32 32 H 1.08993 * 109.47335 * 120.00243 * 2 1 3 33 33 H 1.09005 * 109.47460 * 34.99651 * 4 3 2 34 34 H 1.08992 * 109.47249 * 155.00110 * 4 3 2 35 35 H 0.96992 * 120.00149 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.61799 * 4.78501 * 17 16 13 37 37 H 1.08999 * 109.61462 * 244.25187 * 17 16 13 38 38 H 1.08994 * 109.61700 * 290.31206 * 18 17 16 39 39 H 1.09004 * 109.75619 * 169.87273 * 18 17 16 40 40 H 1.09002 * 109.76067 * 294.55242 * 23 22 20 41 41 H 1.08997 * 109.75837 * 173.84839 * 23 22 20 42 42 H 1.08997 * 109.30345 * 62.26415 * 24 23 22 43 43 H 1.09000 * 109.30069 * 181.64509 * 24 23 22 44 44 H 1.09003 * 109.59971 * 114.92957 * 27 16 13 45 45 H 1.09003 * 109.59902 * 354.45504 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1088 -1.2638 5 6 3.4948 1.7889 -1.8823 6 1 4.1724 1.1117 -1.3836 7 6 3.8525 2.3607 -3.0849 8 7 3.0276 3.1857 -3.6919 9 14 5.5094 1.9648 -3.8512 10 1 6.2463 1.0185 -2.9755 11 1 5.3026 1.3466 -5.1855 12 1 6.2968 3.2148 -4.0014 13 16 2.4123 2.1201 1.4288 14 8 3.3285 3.1570 1.1049 15 8 2.7097 1.0798 2.3499 16 7 1.0433 2.8642 1.9895 17 6 0.1102 2.1506 2.8732 18 6 -0.0766 2.9731 4.1531 19 7 -0.3929 4.3645 3.7768 20 6 -1.5106 4.9194 4.2702 21 8 -2.2454 4.2446 4.9639 22 8 -1.8440 6.1985 4.0225 23 6 -0.7343 7.0835 3.6957 24 6 0.0365 6.4651 2.5282 25 6 0.5295 5.0722 2.8937 26 1 1.4935 5.1623 3.3943 27 6 0.7365 4.2514 1.6145 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3617 1.8099 -1.9453 34 1 2.0923 3.1803 -1.0755 35 1 3.2793 3.5883 -4.5377 36 1 0.5194 1.1719 3.1236 37 1 -0.8500 2.0313 2.3714 38 1 0.8423 2.9522 4.7388 39 1 -0.8950 2.5582 4.7415 40 1 -0.0768 7.1843 4.5592 41 1 -1.1165 8.0627 3.4074 42 1 -0.6179 6.3991 1.6590 43 1 0.8905 7.0973 2.2852 44 1 -0.1727 4.2752 1.0136 45 1 1.5662 4.6678 1.0431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495644641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:36 Heat of formation + Delta-G solvation = -162.988481 kcal Electronic energy + Delta-G solvation = -30964.085428 eV Core-core repulsion = 26721.948699 eV Total energy + Delta-G solvation = -4242.136729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.25147 -39.13685 -38.50016 -38.34271 -37.67556 -36.88344 -35.31224 -34.70400 -33.92532 -31.55557 -30.87812 -28.53163 -28.14434 -25.93192 -24.94270 -24.00949 -23.37175 -23.10063 -20.64479 -20.15366 -19.38280 -18.62388 -18.38866 -18.26711 -17.97904 -17.39262 -17.23579 -16.70978 -16.27804 -15.97494 -15.76875 -15.48266 -15.27244 -15.20042 -14.78549 -14.68433 -14.52638 -13.95188 -13.70164 -13.67809 -13.49675 -13.45886 -13.35517 -13.08150 -13.02454 -12.79340 -12.75615 -12.68348 -12.58239 -12.29883 -12.26276 -12.16111 -12.12032 -11.72439 -11.65122 -11.57667 -11.34465 -10.73788 -10.58011 -9.83760 -9.66680 -8.19812 -6.30759 -0.42937 1.36875 1.38844 1.41511 1.50220 1.52512 1.96317 2.39177 2.44771 2.51615 3.11455 3.22140 3.42254 3.50488 3.69058 3.83979 3.96677 4.00906 4.09467 4.16687 4.21929 4.23604 4.42173 4.47271 4.47693 4.61881 4.65223 4.68320 4.73610 4.76695 4.89600 5.00317 5.02460 5.10155 5.13275 5.18878 5.37997 5.40848 5.41658 5.56959 5.72851 5.96919 6.12452 6.56672 6.77455 6.88251 7.38142 8.87585 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.003666 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.389459 B = 7635.543016 C = 8461.832141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.997 5.997 4 C 0.276 3.724 5 C -0.548 4.548 6 H 0.049 0.951 7 C 0.017 3.983 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.272 1.272 12 H -0.278 1.278 13 S 2.791 3.209 14 O -0.999 6.999 15 O -1.002 7.002 16 N -1.004 6.004 17 C 0.104 3.896 18 C 0.108 3.892 19 N -0.605 5.605 20 C 0.655 3.345 21 O -0.576 6.576 22 O -0.359 6.359 23 C 0.060 3.940 24 C -0.164 4.164 25 C 0.126 3.874 26 H 0.093 0.907 27 C 0.108 3.892 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.025 0.975 34 H 0.020 0.980 35 H 0.267 0.733 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.093 0.907 43 H 0.136 0.864 44 H 0.083 0.917 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 4.802 12.716 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.838 5.838 4 C 0.153 3.847 5 C -0.587 4.587 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.198 1.198 12 H -0.204 1.204 13 S 2.801 3.199 14 O -0.983 6.983 15 O -0.986 6.986 16 N -0.844 5.844 17 C -0.022 4.022 18 C -0.016 4.016 19 N -0.351 5.351 20 C 0.410 3.590 21 O -0.464 6.464 22 O -0.271 6.271 23 C -0.013 4.013 24 C -0.202 4.202 25 C 0.021 3.979 26 H 0.111 0.889 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.167 0.833 42 H 0.112 0.888 43 H 0.154 0.846 44 H 0.101 0.899 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.664 4.734 13.294 16.059 hybrid contribution 0.783 -0.165 -1.102 1.362 sum -6.880 4.569 12.192 14.726 Atomic orbital electron populations 1.22196 0.94570 1.03310 1.02084 1.21372 0.95314 0.81560 1.03448 1.57695 1.81412 1.22613 1.22037 1.18547 0.95553 0.90390 0.80234 1.21852 1.03312 1.27544 1.05999 0.93260 1.25654 1.00534 0.94751 0.97365 1.69992 1.37501 1.30964 1.17640 0.85610 0.80038 0.78233 0.78453 1.19625 1.19756 1.20390 1.01506 0.73478 0.72517 0.72402 1.93561 1.61227 1.58866 1.84653 1.93494 1.83734 1.58013 1.63348 1.58142 1.42143 1.22304 1.61784 1.21979 0.94305 0.95991 0.89884 1.22194 1.03406 0.79274 0.96694 1.47516 1.22927 1.15553 1.49056 1.18076 0.80757 0.81747 0.78401 1.90924 1.52889 1.60355 1.42239 1.86912 1.37951 1.18082 1.84116 1.23738 0.86444 0.93151 0.97996 1.22331 1.04126 0.93753 1.00014 1.21373 0.93488 0.92389 0.90644 0.88891 1.22018 1.03453 0.80016 0.96393 0.92033 0.93221 0.89465 0.90917 0.89616 0.95696 0.96196 0.92402 0.86984 0.89613 0.89528 0.86858 0.89255 0.83277 0.88847 0.84615 0.89899 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.11 3.51 6.40 86.38 0.55 4.07 16 3 N -1.00 -38.91 2.82 -519.84 -1.47 -40.38 16 4 C 0.28 13.27 5.10 85.63 0.44 13.70 16 5 C -0.55 -29.96 9.38 25.60 0.24 -29.72 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 7 C 0.02 0.92 5.46 84.66 0.46 1.38 16 8 N -0.92 -51.93 13.29 21.45 0.28 -51.65 16 9 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 13 S 2.79 102.23 6.10 -56.49 -0.34 101.89 16 14 O -1.00 -44.32 15.71 -128.00 -2.01 -46.33 16 15 O -1.00 -37.81 15.30 -128.00 -1.96 -39.76 16 16 N -1.00 -26.93 3.33 -512.34 -1.70 -28.63 16 17 C 0.10 2.26 5.61 86.38 0.48 2.74 16 18 C 0.11 2.23 6.51 86.27 0.56 2.79 16 19 N -0.61 -13.04 2.94 -928.18 -2.73 -15.76 16 20 C 0.66 16.89 8.30 129.88 1.08 17.97 16 21 O -0.58 -18.92 16.25 19.89 0.32 -18.60 16 22 O -0.36 -7.88 10.58 -53.84 -0.57 -8.45 16 23 C 0.06 0.67 7.15 71.97 0.51 1.19 16 24 C -0.16 -1.93 5.65 30.32 0.17 -1.76 16 25 C 0.13 2.31 3.19 44.96 0.14 2.45 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 C 0.11 2.52 5.85 86.43 0.51 3.03 16 28 H 0.06 1.37 6.51 -2.39 -0.02 1.35 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.50 8.11 -2.38 -0.02 2.48 16 32 H 0.09 2.59 6.91 -2.39 -0.02 2.57 16 33 H 0.02 1.24 8.11 -2.38 -0.02 1.22 16 34 H 0.02 1.01 7.61 -2.39 -0.02 0.99 16 35 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 36 H 0.11 2.33 6.94 -2.39 -0.02 2.31 16 37 H 0.09 1.70 7.61 -2.39 -0.02 1.68 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.11 2.38 6.73 -2.39 -0.02 2.36 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 1.13 7.77 -2.39 -0.02 1.11 16 43 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.81 7.96 -2.39 -0.02 1.80 16 45 H 0.10 2.66 6.93 -2.39 -0.02 2.64 16 Total: -1.00 -75.60 370.30 -1.26 -76.86 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.00 Total: 10.92 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 5.89 Total: 14.48 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -5.61 Total: -136.42 kcal Atomic # 8 Polarization: -108.93 SS G_CDS: -4.21 Total: -113.14 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 102.23 SS G_CDS: -0.34 Total: 101.89 kcal Total: -75.60 -1.26 -76.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495644641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.125 kcal (2) G-P(sol) polarization free energy of solvation -75.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds