Wall clock time and date at job start Wed Apr 1 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35088 * 120.50545 * 2 1 4 4 O 1.21296 * 120.13728 * 1.67706 * 3 2 1 5 5 C 1.50753 * 119.72969 * 181.66243 * 3 2 1 6 6 O 1.42998 * 109.63913 * 328.63764 * 5 3 2 7 7 C 1.35997 * 116.72083 * 46.45897 * 6 5 3 8 8 C 1.38296 * 120.60702 * 147.13639 * 7 6 5 9 9 C 1.38965 * 119.82348 * 180.02562 * 8 7 6 10 10 N 1.39808 * 119.95233 * 180.02562 * 9 8 7 11 11 C 1.34781 * 120.00190 * 324.85806 * 10 9 8 12 12 O 1.21385 * 119.99578 * 4.61341 * 11 10 9 13 13 C 1.49325 * 120.00157 * 184.61289 * 11 10 9 14 14 O 1.21363 * 120.00186 * 0.02562 * 13 11 10 15 15 N 1.34780 * 119.99732 * 179.97438 * 13 11 10 16 16 C 1.46502 * 119.99587 * 179.97438 * 15 13 11 17 17 C 1.52998 * 109.46657 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46923 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99923 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00137 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99983 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00203 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47334 * 90.00060 * 22 20 18 24 24 H 1.48501 * 109.47143 * 210.00387 * 22 20 18 25 25 H 1.48502 * 109.47105 * 330.00442 * 22 20 18 26 26 C 1.38954 * 120.09239 * 0.02562 * 9 8 7 27 27 C 1.38174 * 120.12178 * 0.26255 * 26 9 8 28 28 C 1.38555 * 119.91601 * 359.43868 * 27 26 9 29 29 H 1.09005 * 109.47247 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46965 * 120.00287 * 1 2 3 31 31 H 1.09000 * 109.46879 * 240.00375 * 1 2 3 32 32 H 1.09002 * 109.44219 * 208.59615 * 5 3 2 33 33 H 1.08997 * 109.41985 * 88.67280 * 5 3 2 34 34 H 1.07994 * 120.08984 * 0.07792 * 8 7 6 35 35 H 0.96999 * 119.99804 * 144.86419 * 10 9 8 36 36 H 0.96993 * 120.00075 * 0.02562 * 15 13 11 37 37 H 1.08999 * 109.47447 * 300.00264 * 16 15 13 38 38 H 1.09003 * 109.46701 * 60.00558 * 16 15 13 39 39 H 1.08999 * 109.47175 * 300.00146 * 17 16 15 40 40 H 1.08994 * 109.47529 * 60.00410 * 17 16 15 41 41 H 0.97002 * 120.00443 * 180.02562 * 21 20 18 42 42 H 1.07999 * 119.93799 * 179.97438 * 26 9 8 43 43 H 1.08005 * 120.03949 * 179.71572 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1508 1.1639 0.0000 4 8 1.5565 2.2209 0.0307 5 6 3.6577 1.1438 -0.0380 6 8 4.1398 -0.0228 0.6340 7 6 3.5335 -1.2005 0.3259 8 6 4.2493 -2.3838 0.3323 9 6 3.6135 -3.5778 0.0143 10 7 4.3343 -4.7757 0.0205 11 6 5.6244 -4.7879 -0.3697 12 8 6.1847 -3.7472 -0.6461 13 6 6.3644 -6.0816 -0.4618 14 8 5.8041 -7.1222 -0.1858 15 7 7.6543 -6.0938 -0.8524 16 6 8.3804 -7.3630 -0.9422 17 6 9.8146 -7.0983 -1.4045 18 6 10.5615 -8.4039 -1.4976 19 1 10.0628 -9.3300 -1.2519 20 6 11.8810 -8.4165 -1.8973 21 7 12.4880 -7.2889 -2.1969 22 14 12.8065 -10.0349 -2.0133 23 1 12.6466 -10.6000 -3.3773 24 1 14.2474 -9.8019 -1.7397 25 1 12.2612 -10.9896 -1.0150 26 6 2.2622 -3.5829 -0.3097 27 6 1.5477 -2.4003 -0.3221 28 6 2.1775 -1.2090 0.0006 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 -0.3633 -0.5138 0.8900 32 1 4.0450 2.0340 0.4576 33 1 3.9939 1.1303 -1.0747 34 1 5.2993 -2.3800 0.5845 35 1 3.9060 -5.5980 0.3054 36 1 8.1020 -5.2622 -1.0733 37 1 8.3972 -7.8421 0.0367 38 1 7.8822 -8.0167 -1.6583 39 1 9.7982 -6.6190 -2.3834 40 1 10.3126 -6.4448 -0.6883 41 1 13.4162 -7.2977 -2.4785 42 1 1.7707 -4.5122 -0.5568 43 1 0.4986 -2.4051 -0.5785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577573348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:16 Heat of formation + Delta-G solvation = -123.318616 kcal Electronic energy + Delta-G solvation = -28895.672770 eV Core-core repulsion = 24519.812304 eV Total energy + Delta-G solvation = -4375.860466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.70718 -41.98836 -40.36453 -39.63600 -38.67616 -37.28268 -36.74349 -35.27237 -34.73601 -31.86149 -31.68616 -30.35134 -30.28747 -27.59525 -27.10128 -25.68923 -24.13748 -23.69939 -22.75614 -21.48791 -20.88870 -20.28542 -19.66700 -18.62443 -18.45258 -18.26743 -17.79009 -17.23519 -17.16847 -16.72928 -16.51951 -16.37332 -16.13112 -15.98453 -15.87250 -15.35160 -15.13143 -15.06330 -14.65202 -14.51107 -14.50169 -14.29640 -13.64900 -13.57227 -13.26411 -13.22864 -12.96098 -12.93762 -12.69388 -12.53832 -12.46180 -12.27039 -11.84306 -11.67028 -11.42547 -11.21813 -10.73616 -10.68586 -10.60507 -10.21189 -9.73575 -8.75765 -8.22393 -6.33332 -0.30669 0.15275 0.33600 1.04923 1.23056 1.43761 1.44578 1.44847 1.56187 2.00367 2.15841 2.40798 2.56154 2.64544 2.84144 3.12873 3.33157 3.54452 3.90150 3.97397 4.03793 4.09603 4.21789 4.33143 4.39563 4.45599 4.47503 4.52993 4.64686 4.78356 4.83483 4.90286 5.05733 5.06271 5.12215 5.27897 5.43406 5.50948 5.56741 5.72055 5.76404 5.86878 6.13946 6.18892 6.29779 6.53706 6.62659 6.79707 6.86469 7.36294 8.89465 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.025864 B = 0.001730 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.337046 B =16184.428317 C =17100.081301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.553 5.553 3 C 0.483 3.517 4 O -0.544 6.544 5 C 0.049 3.951 6 O -0.315 6.315 7 C 0.081 3.919 8 C -0.127 4.127 9 C 0.141 3.859 10 N -0.628 5.628 11 C 0.516 3.484 12 O -0.516 6.516 13 C 0.506 3.494 14 O -0.542 6.542 15 N -0.686 5.686 16 C 0.138 3.862 17 C 0.017 3.983 18 C -0.544 4.544 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.928 5.928 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.263 1.263 26 C -0.112 4.112 27 C -0.089 4.089 28 C 0.075 3.925 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.437 0.563 36 H 0.415 0.585 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.265 0.735 42 H 0.173 0.827 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.313 12.655 4.401 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.278 5.278 3 C 0.272 3.728 4 O -0.422 6.422 5 C -0.028 4.028 6 O -0.230 6.230 7 C 0.034 3.966 8 C -0.149 4.149 9 C 0.046 3.954 10 N -0.276 5.276 11 C 0.298 3.702 12 O -0.390 6.390 13 C 0.286 3.714 14 O -0.421 6.421 15 N -0.337 5.337 16 C 0.015 3.985 17 C -0.021 4.021 18 C -0.582 4.582 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.791 3.209 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.187 1.187 26 C -0.132 4.132 27 C -0.109 4.109 28 C -0.019 4.019 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.278 0.722 36 H 0.252 0.748 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.191 0.809 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -27.319 13.337 4.479 30.729 hybrid contribution 0.975 -0.370 -0.195 1.061 sum -26.344 12.968 4.284 29.673 Atomic orbital electron populations 1.22131 0.75484 1.05060 1.04650 1.45674 1.08831 1.03905 1.69368 1.21900 0.92110 0.83382 0.75384 1.90748 1.71425 1.30505 1.49523 1.23425 0.88108 0.88989 1.02299 1.86245 1.59409 1.13663 1.63667 1.18438 0.89459 0.86619 1.02046 1.20496 1.01064 0.89968 1.03329 1.17544 0.92093 0.84614 1.01134 1.42953 1.10307 1.11340 1.63016 1.20153 0.83158 0.89103 0.77768 1.90796 1.67557 1.33517 1.47179 1.19967 0.83150 0.89068 0.79177 1.90747 1.67941 1.33809 1.49567 1.46064 1.10804 1.12474 1.64393 1.21504 0.92423 0.83489 1.01051 1.19189 0.90038 0.96960 0.95870 1.21460 0.96904 0.93896 1.45948 0.91590 1.25911 0.98704 1.00152 0.94674 1.70074 1.12431 1.28032 1.46224 0.85417 0.77387 0.79231 0.78835 1.19832 1.20924 1.18713 1.21117 0.91184 1.00349 1.00576 1.20802 1.01961 0.88464 0.99693 1.18252 0.90194 0.87593 1.05899 0.89815 0.88498 0.89257 0.81828 0.86609 0.84704 0.72249 0.74829 0.91784 0.91717 0.97380 0.97388 0.92628 0.80920 0.80754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 9.71 127.77 1.24 1.83 16 2 N -0.55 -8.42 3.12 -653.38 -2.04 -10.46 16 3 C 0.48 9.02 7.67 87.62 0.67 9.69 16 4 O -0.54 -13.03 16.51 -3.08 -0.05 -13.08 16 5 C 0.05 0.75 7.17 71.25 0.51 1.26 16 6 O -0.32 -6.51 10.45 -93.51 -0.98 -7.49 16 7 C 0.08 1.63 6.44 22.58 0.15 1.78 16 8 C -0.13 -2.78 8.64 22.46 0.19 -2.59 16 9 C 0.14 2.47 6.30 38.21 0.24 2.71 16 10 N -0.63 -11.79 5.32 -304.74 -1.62 -13.42 16 11 C 0.52 13.38 7.73 87.23 0.67 14.06 16 12 O -0.52 -15.50 13.90 -3.36 -0.05 -15.54 16 13 C 0.51 15.41 7.88 87.23 0.69 16.10 16 14 O -0.54 -17.96 16.48 -3.29 -0.05 -18.02 16 15 N -0.69 -23.15 5.55 -464.53 -2.58 -25.73 16 16 C 0.14 5.46 5.61 86.38 0.48 5.95 16 17 C 0.02 0.83 5.09 29.85 0.15 0.98 16 18 C -0.54 -29.29 9.11 25.60 0.23 -29.05 16 19 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 20 C 0.00 0.24 5.46 84.66 0.46 0.70 16 21 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 22 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 26 C -0.11 -1.17 9.96 22.43 0.22 -0.95 16 27 C -0.09 -0.85 9.37 22.33 0.21 -0.64 16 28 C 0.08 1.16 6.39 38.15 0.24 1.40 16 29 H 0.08 0.97 6.96 -2.38 -0.02 0.96 16 30 H 0.10 0.36 7.48 -2.39 -0.02 0.34 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.14 3.55 6.22 -2.91 -0.02 3.53 16 35 H 0.44 6.26 8.30 -92.71 -0.77 5.49 16 36 H 0.42 13.51 7.94 -92.71 -0.74 12.78 16 37 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 43 H 0.18 0.46 6.79 -2.91 -0.02 0.44 16 Total: -1.00 -72.68 372.78 0.91 -71.77 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -0.41 Total: 17.86 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 6.37 Total: 23.22 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -5.95 Total: -103.41 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -1.13 Total: -54.13 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -72.68 0.91 -71.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577573348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.548 kcal (2) G-P(sol) polarization free energy of solvation -72.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds