Wall clock time and date at job start Wed Apr 1 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99968 * 2 1 4 4 C 1.52997 * 109.46871 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47455 * 57.11528 * 4 3 2 6 6 C 1.46505 * 120.00179 * 91.12397 * 5 4 3 7 7 C 1.50694 * 109.47346 * 115.29466 * 6 5 4 8 8 H 1.07995 * 120.00373 * 1.18267 * 7 6 5 9 9 C 1.37875 * 119.99982 * 181.18887 * 7 6 5 10 10 N 1.31520 * 120.00168 * 185.03410 * 9 7 6 11 11 Si 1.86805 * 120.00162 * 5.02918 * 9 7 6 12 12 H 1.48503 * 109.46764 * 84.86381 * 11 9 7 13 13 H 1.48497 * 109.47115 * 204.86387 * 11 9 7 14 14 H 1.48505 * 109.47080 * 324.86872 * 11 9 7 15 15 C 1.34779 * 120.00026 * 271.12475 * 5 4 3 16 16 O 1.21547 * 119.99741 * 19.74694 * 15 5 4 17 17 C 1.47863 * 119.99690 * 199.75128 * 15 5 4 18 18 C 1.39697 * 120.07468 * 333.27818 * 17 15 5 19 19 C 1.38062 * 120.13838 * 179.97438 * 18 17 15 20 20 C 1.38098 * 120.29927 * 0.02952 * 19 18 17 21 21 C 1.39655 * 120.14505 * 359.97438 * 20 19 18 22 22 C 1.47884 * 120.07272 * 180.02562 * 21 20 19 23 23 N 1.32687 * 126.35228 * 179.69367 * 22 21 20 24 24 C 1.34037 * 105.78487 * 179.85501 * 23 22 21 25 25 O 1.21925 * 126.41644 * 180.14553 * 24 23 22 26 26 O 1.34169 * 107.16544 * 0.40271 * 24 23 22 27 27 N 1.21327 * 109.82457 * 359.74360 * 26 24 23 28 28 H 0.97001 * 125.03267 * 180.02562 * 27 26 24 29 29 C 1.39304 * 120.07205 * 153.00504 * 17 15 5 30 30 H 1.09003 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47064 * 300.00143 * 1 2 3 32 32 H 1.09005 * 109.47128 * 59.99796 * 1 2 3 33 33 H 1.08992 * 109.47561 * 59.99911 * 3 2 1 34 34 H 1.09001 * 109.47367 * 300.00064 * 3 2 1 35 35 H 1.08998 * 109.47374 * 297.11238 * 4 3 2 36 36 H 1.09002 * 109.47303 * 177.11497 * 4 3 2 37 37 H 1.08999 * 109.47112 * 355.28994 * 6 5 4 38 38 H 1.09002 * 109.47224 * 235.29672 * 6 5 4 39 39 H 0.97001 * 119.99887 * 179.97438 * 10 9 7 40 40 H 1.07990 * 119.93382 * 359.97438 * 18 17 15 41 41 H 1.07999 * 119.84834 * 179.97438 * 19 18 17 42 42 H 1.07996 * 119.93223 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.14553 * 0.02562 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9626 0.3986 -1.1608 6 6 4.2838 1.0703 -2.4226 7 6 5.7453 0.8788 -2.7357 8 1 6.3681 0.2973 -2.0722 9 6 6.2876 1.4461 -3.8694 10 7 7.5373 1.1981 -4.1956 11 14 5.2471 2.5669 -4.9422 12 1 5.2881 3.9488 -4.4000 13 1 5.7821 2.5626 -6.3274 14 1 3.8441 2.0804 -4.9517 15 6 4.0600 -0.9424 -1.0674 16 8 3.4729 -1.5342 -0.1829 17 6 4.8813 -1.6935 -2.0410 18 6 5.0929 -1.1792 -3.3225 19 6 5.8599 -1.8791 -4.2324 20 6 6.4223 -3.0911 -3.8832 21 6 6.2185 -3.6166 -2.6054 22 6 6.8220 -4.9144 -2.2330 23 7 6.7149 -5.5235 -1.0590 24 6 7.4129 -6.6620 -1.1740 25 8 7.5611 -7.5105 -0.3110 26 8 7.9226 -6.6904 -2.4148 27 7 7.5866 -5.6943 -3.0205 28 1 7.8322 -5.4902 -3.9365 29 6 5.4504 -2.9127 -1.6804 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8610 0.6888 0.9138 36 1 3.9787 2.1790 -0.0524 37 1 4.0679 2.1349 -2.3327 38 1 3.6814 0.6440 -3.2248 39 1 7.9186 1.5969 -4.9934 40 1 4.6556 -0.2322 -3.6021 41 1 6.0201 -1.4774 -5.2220 42 1 7.0209 -3.6339 -4.5997 43 1 5.2932 -3.3128 -0.6896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597136629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:58 Heat of formation + Delta-G solvation = 39.495704 kcal Electronic energy + Delta-G solvation = -30963.986581 eV Core-core repulsion = 26595.186274 eV Total energy + Delta-G solvation = -4368.800307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.21808 -39.98746 -38.10528 -37.73148 -37.17922 -35.86551 -35.18919 -33.39319 -32.35139 -31.21631 -30.42900 -29.37439 -28.11243 -26.09637 -24.56866 -23.84884 -23.17767 -23.01500 -21.45066 -21.30596 -19.95875 -18.74280 -18.21385 -17.68591 -17.06339 -16.31718 -16.17162 -15.93547 -15.71580 -15.53175 -15.25789 -14.92483 -14.49212 -14.21042 -13.97912 -13.53086 -13.44020 -13.27824 -13.18934 -12.87243 -12.71622 -12.53785 -12.30123 -11.85425 -11.77891 -11.49811 -11.33876 -11.30479 -11.15592 -10.85450 -10.76330 -10.67858 -10.29692 -10.20256 -9.91854 -9.39005 -9.34557 -8.99608 -8.91622 -8.42300 -8.09760 -7.84987 -6.88309 -4.62764 0.72918 1.67679 1.97828 2.23714 2.82487 2.89296 2.92954 3.19729 3.44064 3.57289 3.72464 3.73900 4.11798 4.28106 4.35137 4.69835 4.99998 5.14024 5.27169 5.30856 5.41846 5.51916 5.53179 5.54806 5.55240 5.75182 5.85527 5.95398 5.97019 6.06157 6.07927 6.14242 6.19712 6.35723 6.54964 6.62217 6.72080 6.81961 7.02168 7.11626 7.18031 7.47121 7.49416 7.67919 7.80183 8.10130 8.23458 8.25069 8.60809 9.00051 10.16944 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.004063 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.476254 B = 6890.376669 C = 9311.582623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.042 3.958 4 C 0.127 3.873 5 N -0.603 5.603 6 C 0.190 3.810 7 C -0.505 4.505 8 H 0.100 0.900 9 C 0.072 3.928 10 N -0.830 5.830 11 Si 0.871 3.129 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.257 1.257 15 C 0.573 3.427 16 O -0.526 6.526 17 C -0.183 4.183 18 C 0.016 3.984 19 C -0.158 4.158 20 C -0.048 4.048 21 C -0.153 4.153 22 C 0.425 3.575 23 N -0.562 5.562 24 C 0.558 3.442 25 O -0.489 6.489 26 O -0.094 6.094 27 N -0.516 5.516 28 H 0.467 0.533 29 C 0.024 3.976 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.279 0.721 40 H 0.185 0.815 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 2.489 -4.672 8.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C -0.037 4.037 4 C 0.003 3.997 5 N -0.336 5.336 6 C 0.068 3.932 7 C -0.539 4.539 8 H 0.118 0.882 9 C -0.140 4.140 10 N -0.460 5.460 11 Si 0.695 3.305 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.181 1.181 15 C 0.363 3.637 16 O -0.403 6.403 17 C -0.187 4.187 18 C -0.003 4.003 19 C -0.177 4.177 20 C -0.068 4.068 21 C -0.157 4.157 22 C 0.165 3.835 23 N -0.324 5.324 24 C 0.308 3.692 25 O -0.371 6.371 26 O -0.115 6.115 27 N -0.184 5.184 28 H 0.320 0.680 29 C 0.003 3.997 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.201 0.799 41 H 0.140 0.860 42 H 0.127 0.873 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.063 1.381 -3.221 7.003 hybrid contribution 0.349 0.862 -1.628 1.875 sum -5.714 2.243 -4.849 7.823 Atomic orbital electron populations 1.22682 0.82771 1.02274 0.98889 1.88270 1.17849 1.26099 1.95035 1.23040 0.95425 0.85767 0.99428 1.21396 0.91514 0.96594 0.90167 1.47469 1.67804 1.05835 1.12493 1.20239 0.96034 0.94114 0.82836 1.21746 0.93457 1.29858 1.08819 0.88195 1.25106 0.95393 0.95951 0.97560 1.69887 1.12928 1.38557 1.24662 0.86898 0.81227 0.82101 0.80269 1.18984 1.20057 1.18094 1.18081 0.79680 0.81604 0.84363 1.90743 1.44157 1.68322 1.37059 1.19533 1.06008 0.96941 0.96172 1.23042 0.92800 0.92930 0.91548 1.20673 1.01789 0.94676 1.00527 1.20958 0.96338 0.96289 0.93256 1.16921 1.10238 0.91656 0.96887 1.23406 0.83694 0.91346 0.85016 1.73584 1.31062 1.08944 1.18818 1.21890 0.80171 0.87663 0.79504 1.91128 1.64396 1.43747 1.37879 1.85127 1.66603 1.28796 1.31004 1.42431 1.48300 1.12711 1.14957 0.68005 1.21024 0.89378 0.91029 0.98244 0.90048 0.94892 0.94899 0.93370 0.93734 0.90192 0.89161 0.93902 0.94098 0.91029 0.79892 0.86033 0.87318 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.35 -5.90 8.37 -56.10 -0.47 -6.37 16 3 C 0.04 0.57 6.33 37.16 0.24 0.81 16 4 C 0.13 1.93 5.87 -4.04 -0.02 1.90 16 5 N -0.60 -10.88 2.55 -176.65 -0.45 -11.33 16 6 C 0.19 3.35 4.02 -5.19 -0.02 3.33 16 7 C -0.50 -10.20 5.57 -34.44 -0.19 -10.39 16 8 H 0.10 2.37 6.99 -52.49 -0.37 2.01 16 9 C 0.07 1.46 4.90 -17.82 -0.09 1.37 16 10 N -0.83 -18.42 13.96 55.43 0.77 -17.65 16 11 Si 0.87 15.20 27.19 -169.99 -4.62 10.57 16 12 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 13 H -0.28 -4.90 7.11 56.52 0.40 -4.50 16 14 H -0.26 -4.19 6.76 56.52 0.38 -3.81 16 15 C 0.57 11.53 7.00 -12.32 -0.09 11.45 16 16 O -0.53 -11.77 14.69 -15.55 -0.23 -12.00 16 17 C -0.18 -3.50 4.93 -105.02 -0.52 -4.01 16 18 C 0.02 0.29 5.86 -39.10 -0.23 0.06 16 19 C -0.16 -2.54 10.01 -39.70 -0.40 -2.93 16 20 C -0.05 -0.68 9.70 -39.10 -0.38 -1.06 16 21 C -0.15 -2.47 5.87 -105.02 -0.62 -3.09 16 22 C 0.43 6.72 7.80 -155.23 -1.21 5.51 16 23 N -0.56 -10.79 11.23 -14.89 -0.17 -10.96 16 24 C 0.56 10.76 9.59 53.46 0.51 11.27 16 25 O -0.49 -10.86 18.07 -19.20 -0.35 -11.21 16 26 O -0.09 -1.43 11.33 -7.46 -0.08 -1.51 16 27 N -0.52 -6.39 6.74 31.97 0.22 -6.18 16 28 H 0.47 3.58 8.01 -40.82 -0.33 3.25 16 29 C 0.02 0.45 9.24 -38.78 -0.36 0.09 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.28 7.79 -51.93 -0.40 0.88 16 36 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 37 H 0.04 0.70 7.03 -51.93 -0.37 0.33 16 38 H 0.04 0.72 5.68 -51.93 -0.29 0.42 16 39 H 0.28 5.82 8.31 -40.82 -0.34 5.48 16 40 H 0.18 3.34 2.22 -55.17 -0.12 3.22 16 41 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 42 H 0.11 1.09 7.13 -52.49 -0.37 0.72 16 43 H 0.14 2.69 7.68 -52.49 -0.40 2.29 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -29.62 360.34 -6.97 -36.59 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.76 Total: 8.80 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: -2.26 Total: 15.80 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.37 Total: -46.11 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.13 Total: -31.09 kcal Atomic # 14 Polarization: 15.20 SS G_CDS: -4.62 Total: 10.57 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.62 -6.97 -36.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.088 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds