Wall clock time and date at job start Wed Apr 1 2020 04:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.46950 * 2 1 4 4 C 1.35354 * 116.99978 * 179.97438 * 3 2 1 5 5 N 1.30550 * 125.44423 * 180.31351 * 4 3 2 6 6 C 1.36337 * 108.38575 * 180.11524 * 5 4 3 7 7 C 1.47331 * 126.41634 * 179.85629 * 6 5 4 8 8 O 1.21619 * 120.00111 * 179.68656 * 7 6 5 9 9 N 1.34779 * 119.99735 * 359.69313 * 7 6 5 10 10 C 1.39496 * 120.00103 * 179.97438 * 9 7 6 11 11 N 1.32295 * 119.72733 * 0.29337 * 10 9 7 12 12 C 1.31958 * 121.68710 * 180.28222 * 11 10 9 13 13 C 1.38078 * 120.95961 * 359.68627 * 12 11 10 14 14 C 1.38794 * 119.35571 * 0.02562 * 13 12 11 15 15 C 1.38781 * 118.44752 * 359.97438 * 14 13 12 16 16 O 1.35983 * 120.49767 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99537 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47325 * 59.99531 * 23 21 19 25 25 H 1.48496 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47183 * 299.99726 * 23 21 19 27 27 C 1.35932 * 107.16609 * 359.60131 * 6 5 4 28 28 O 1.34202 * 125.44406 * 359.97347 * 4 3 2 29 29 H 1.09004 * 109.47282 * 59.99877 * 1 2 3 30 30 H 1.09003 * 109.46593 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47016 * 299.99600 * 1 2 3 32 32 H 1.09004 * 109.47491 * 240.00319 * 2 1 3 33 33 H 1.09004 * 109.47282 * 120.00122 * 2 1 3 34 34 H 0.97000 * 120.00597 * 359.97438 * 9 7 6 35 35 H 1.08000 * 119.51802 * 179.70163 * 12 11 10 36 36 H 1.07991 * 120.32440 * 179.97438 * 13 12 11 37 37 H 1.08002 * 120.77438 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.47490 * 59.99651 * 17 16 15 39 39 H 1.09001 * 109.47232 * 299.99005 * 17 16 15 40 40 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 41 41 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 42 42 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 43 43 H 1.08001 * 126.45629 * 180.26072 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3481 1.5247 0.0005 5 7 3.9593 2.6783 0.0064 6 6 5.3038 2.4526 0.0023 7 6 6.3627 3.4771 0.0035 8 8 7.5321 3.1430 0.0051 9 7 6.0353 4.7845 0.0029 10 6 7.0377 5.7545 0.0046 11 7 8.3080 5.3852 0.0008 12 6 9.2871 6.2698 0.0078 13 6 9.0204 7.6246 0.0128 14 6 7.7020 8.0585 0.0111 15 6 6.6926 7.1061 0.0037 16 8 5.3865 7.4847 0.0023 17 6 5.1180 8.8883 0.0081 18 6 3.6053 9.1181 0.0048 19 6 3.3222 10.5982 0.0116 20 1 4.1394 11.3043 0.0180 21 6 2.0199 11.0510 0.0106 22 7 1.0247 10.1911 0.0033 23 14 1.6688 12.8857 0.0182 24 1 2.2662 13.5090 -1.1899 25 1 0.2007 13.1088 0.0152 26 1 2.2605 13.4978 1.2350 27 6 5.4845 1.1053 0.0025 28 8 4.2629 0.5428 0.0016 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.1026 5.0510 0.0014 35 1 10.3120 5.9292 0.0093 36 1 9.8296 8.3396 0.0189 37 1 7.4672 9.1126 0.0145 38 1 5.5566 9.3458 -0.8787 39 1 5.5521 9.3376 0.9013 40 1 3.1716 8.6688 -0.8885 41 1 3.1664 8.6605 0.8914 42 1 0.1086 10.5097 0.0022 43 1 6.4308 0.5847 0.0038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613928832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:33 Heat of formation + Delta-G solvation = -60.766202 kcal Electronic energy + Delta-G solvation = -29038.620074 eV Core-core repulsion = 24665.472084 eV Total energy + Delta-G solvation = -4373.147989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.62111 -42.05274 -40.46212 -39.95124 -39.08219 -36.24014 -35.95085 -35.44723 -32.98285 -32.85287 -32.26564 -30.86851 -30.23900 -27.17341 -26.27425 -24.79647 -24.49387 -23.94295 -23.28281 -22.57850 -21.57227 -20.36020 -19.47771 -18.78114 -18.70722 -18.58187 -18.01345 -17.54873 -17.20006 -17.07676 -16.65875 -16.48493 -16.15902 -16.06131 -15.95886 -15.33639 -15.15206 -14.81931 -14.58835 -14.33892 -14.14078 -13.95831 -13.64788 -13.58189 -13.30173 -12.81106 -12.71728 -12.69136 -12.62322 -12.44679 -11.95632 -11.95109 -11.80635 -11.75538 -11.71701 -11.61107 -11.42989 -10.60024 -10.42608 -10.31797 -9.85506 -8.88550 -8.24314 -6.38093 -0.22390 0.23179 0.28949 0.78104 0.89180 1.42213 1.45900 1.53632 1.53912 1.79396 2.08260 2.11843 2.44968 2.87703 3.03489 3.10215 3.54393 3.65580 3.85281 3.87415 3.91597 3.93421 4.07824 4.12984 4.24410 4.28907 4.32106 4.33662 4.47973 4.59009 4.74388 4.80752 4.85009 4.95920 5.11044 5.17227 5.20706 5.31679 5.49362 5.52107 5.60239 5.72956 6.01928 6.07632 6.30286 6.42793 6.76784 6.81351 7.12318 7.31994 8.88294 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007000 B = 0.002940 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3999.040736 B = 9521.776201 C =13489.753837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.260 6.260 4 C 0.389 3.611 5 N -0.494 5.494 6 C -0.083 4.083 7 C 0.599 3.401 8 O -0.496 6.496 9 N -0.641 5.641 10 C 0.305 3.695 11 N -0.469 5.469 12 C 0.077 3.923 13 C -0.140 4.140 14 C -0.147 4.147 15 C 0.042 3.958 16 O -0.333 6.333 17 C 0.084 3.916 18 C 0.029 3.971 19 C -0.545 4.545 20 H 0.073 0.927 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.974 3.026 24 H -0.264 1.264 25 H -0.285 1.285 26 H -0.263 1.263 27 C 0.045 3.955 28 O -0.211 6.211 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.429 0.571 35 H 0.194 0.806 36 H 0.180 0.820 37 H 0.159 0.841 38 H 0.066 0.934 39 H 0.066 0.934 40 H -0.002 1.002 41 H -0.002 1.002 42 H 0.266 0.734 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.798 -20.538 0.015 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.169 6.169 4 C 0.142 3.858 5 N -0.240 5.240 6 C -0.201 4.201 7 C 0.385 3.615 8 O -0.368 6.368 9 N -0.288 5.288 10 C 0.074 3.926 11 N -0.184 5.184 12 C -0.080 4.080 13 C -0.160 4.160 14 C -0.174 4.174 15 C -0.009 4.009 16 O -0.247 6.247 17 C 0.010 3.990 18 C -0.008 4.008 19 C -0.583 4.583 20 H 0.092 0.908 21 C -0.197 4.197 22 N -0.569 5.569 23 Si 0.798 3.202 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.188 1.188 27 C -0.028 4.028 28 O -0.101 6.101 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.267 0.733 35 H 0.210 0.790 36 H 0.197 0.803 37 H 0.176 0.824 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.075 0.925 43 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 9.832 -21.224 0.013 23.391 hybrid contribution -1.179 1.280 0.001 1.741 sum 8.653 -19.944 0.015 21.740 Atomic orbital electron populations 1.21880 0.90096 1.05135 1.03695 1.23473 0.97795 0.77587 1.04395 1.86463 1.07971 1.33591 1.88859 1.23230 0.84201 0.81308 0.97059 1.71080 1.04667 1.23372 1.24924 1.21414 0.89560 0.94751 1.14377 1.16959 0.86875 0.81169 0.76453 1.90877 1.17881 1.80750 1.47283 1.43293 1.09936 1.04746 1.70777 1.17936 0.88159 0.84108 1.02357 1.67661 0.97419 1.38933 1.14416 1.23146 0.98593 0.89230 0.97070 1.22333 0.96518 0.97608 0.99568 1.21925 0.92922 1.00271 1.02253 1.19793 0.85603 0.92839 1.02659 1.86074 1.21382 1.28764 1.88465 1.22971 0.98514 0.76521 1.01031 1.18946 0.89376 0.96464 0.96022 1.21370 0.93027 0.91782 1.52122 0.90845 1.26028 0.95949 1.03469 0.94252 1.70123 0.99636 1.36612 1.50565 0.85364 0.77041 0.78404 0.79424 1.18824 1.21032 1.18812 1.25660 0.86800 0.91464 0.98901 1.84445 1.15907 1.38317 1.71448 0.91609 0.86669 0.91611 0.89325 0.89338 0.73297 0.78971 0.80281 0.82391 0.91545 0.91543 0.98378 0.98386 0.92543 0.70762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 71.98 0.74 -0.68 16 2 C 0.04 0.50 6.38 71.98 0.46 0.96 16 3 O -0.26 -5.90 10.19 -64.23 -0.65 -6.55 16 4 C 0.39 9.80 8.98 130.43 1.17 10.97 16 5 N -0.49 -15.43 11.10 -419.41 -4.65 -20.08 16 6 C -0.08 -2.35 6.99 40.30 0.28 -2.06 16 7 C 0.60 19.81 7.78 86.64 0.67 20.49 16 8 O -0.50 -17.38 15.14 -4.09 -0.06 -17.45 16 9 N -0.64 -22.88 5.39 -311.06 -1.68 -24.56 16 10 C 0.31 10.96 7.44 133.01 0.99 11.95 16 11 N -0.47 -15.60 7.87 -192.63 -1.52 -17.11 16 12 C 0.08 1.88 11.17 84.64 0.95 2.82 16 13 C -0.14 -3.02 10.10 22.36 0.23 -2.79 16 14 C -0.15 -4.12 9.14 22.53 0.21 -3.92 16 15 C 0.04 1.47 6.72 22.70 0.15 1.63 16 16 O -0.33 -13.70 9.38 -93.36 -0.88 -14.58 16 17 C 0.08 3.50 4.70 71.98 0.34 3.84 16 18 C 0.03 1.56 5.34 29.85 0.16 1.72 16 19 C -0.55 -30.18 9.11 25.60 0.23 -29.95 16 20 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 21 C 0.00 0.10 5.46 84.65 0.46 0.56 16 22 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 23 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 26 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 27 C 0.04 0.85 11.93 67.28 0.80 1.65 16 28 O -0.21 -4.03 10.20 18.86 0.19 -3.84 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.43 15.83 7.77 -92.71 -0.72 15.11 16 35 H 0.19 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.18 2.28 8.06 -2.92 -0.02 2.26 16 37 H 0.16 3.96 6.44 -2.91 -0.02 3.95 16 38 H 0.07 2.55 7.70 -2.39 -0.02 2.53 16 39 H 0.07 2.55 7.70 -2.39 -0.02 2.53 16 40 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.28 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -78.29 381.76 1.25 -77.04 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.35 Total: 21.05 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 7.84 Total: 17.19 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -7.56 Total: -117.99 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.40 Total: -42.41 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -78.29 1.25 -77.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613928832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.273 kcal (2) G-P(sol) polarization free energy of solvation -78.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds