Wall clock time and date at job start Wed Apr 1 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39286 * 125.81634 * 2 1 4 4 C 1.38651 * 133.33624 * 359.67563 * 3 2 1 5 5 C 1.38108 * 119.85200 * 179.85428 * 4 3 2 6 6 C 1.38445 * 120.27837 * 0.48294 * 5 4 3 7 7 C 1.38098 * 120.28496 * 359.73777 * 6 5 4 8 8 C 1.38663 * 119.85477 * 0.02562 * 7 6 5 9 9 N 1.39285 * 133.34240 * 179.97438 * 8 7 6 10 10 C 1.46501 * 125.81396 * 0.02904 * 9 8 7 11 11 C 1.52996 * 109.47356 * 89.99485 * 10 9 8 12 12 C 1.50702 * 109.47164 * 179.97438 * 11 10 9 13 13 O 1.20824 * 119.99902 * 0.02562 * 12 11 10 14 14 O 1.34224 * 120.00092 * 180.02562 * 12 11 10 15 15 C 1.45202 * 117.00333 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47306 * 180.02562 * 15 14 12 17 17 O 1.21296 * 120.00477 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00104 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00590 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99596 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00552 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99553 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46884 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47155 * 119.99525 * 23 21 19 26 26 H 1.48500 * 109.46597 * 239.99671 * 23 21 19 27 27 C 1.34633 * 108.36531 * 180.02562 * 9 8 7 28 28 O 1.21687 * 125.16331 * 180.02562 * 27 9 8 29 29 H 1.09002 * 109.46980 * 89.99904 * 1 2 3 30 30 H 1.08994 * 109.47466 * 210.00028 * 1 2 3 31 31 H 1.08998 * 109.47295 * 330.00730 * 1 2 3 32 32 H 1.07998 * 120.07690 * 0.31505 * 4 3 2 33 33 H 1.08001 * 119.86087 * 180.24065 * 5 4 3 34 34 H 1.08008 * 119.85606 * 179.75209 * 6 5 4 35 35 H 1.08007 * 120.07483 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.46583 * 209.99522 * 10 9 8 37 37 H 1.09004 * 109.47253 * 329.99374 * 10 9 8 38 38 H 1.09000 * 109.47125 * 300.00119 * 11 10 9 39 39 H 1.09004 * 109.47030 * 59.99752 * 11 10 9 40 40 H 1.09003 * 109.47055 * 300.00291 * 15 14 12 41 41 H 1.09001 * 109.46981 * 59.99896 * 15 14 12 42 42 H 0.96999 * 119.99855 * 0.02562 * 18 16 15 43 43 H 0.97003 * 119.99472 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.1295 0.0000 4 6 2.0192 2.4912 -0.0057 5 6 3.0662 3.3918 -0.0008 6 6 4.3751 2.9406 -0.0004 7 6 4.6448 1.5862 0.0007 8 6 3.6002 0.6743 0.0008 9 7 3.5462 -0.7175 0.0012 10 6 4.7000 -1.6202 0.0024 11 6 5.1007 -1.9338 1.4453 12 6 6.2873 -2.8629 1.4465 13 8 6.7638 -3.2355 0.4006 14 8 6.8147 -3.2765 2.6094 15 6 7.9568 -4.1700 2.5346 16 6 8.4086 -4.5254 3.9276 17 8 7.8258 -4.0701 4.8890 18 7 9.4610 -5.3484 4.1052 19 6 9.8725 -5.6714 5.3725 20 1 9.3536 -5.2660 6.2285 21 6 10.9578 -6.5195 5.5557 22 7 11.5896 -7.0124 4.5141 23 14 11.5180 -6.9601 7.2824 24 1 10.6464 -6.2802 8.2740 25 1 11.4301 -8.4303 7.4712 26 1 12.9230 -6.5193 7.4744 27 6 2.2529 -1.0918 0.0005 28 8 1.8563 -2.2422 0.0011 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 0.9995 2.8469 -0.0064 33 1 2.8631 4.4525 -0.0014 34 1 5.1887 3.6509 -0.0006 35 1 5.6672 1.2379 0.0015 36 1 4.4381 -2.5452 -0.5112 37 1 5.5350 -1.1433 -0.5111 38 1 5.3626 -1.0088 1.9589 39 1 4.2658 -2.4107 1.9588 40 1 7.6735 -5.0779 2.0021 41 1 8.7703 -3.6761 2.0033 42 1 9.9278 -5.7117 3.3365 43 1 12.3470 -7.6047 4.6420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:18 Heat of formation + Delta-G solvation = -87.284445 kcal Electronic energy + Delta-G solvation = -28910.788693 eV Core-core repulsion = 24536.490786 eV Total energy + Delta-G solvation = -4374.297907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86667 -40.42288 -38.70429 -38.20334 -36.67588 -36.22779 -35.99519 -34.01277 -32.55501 -31.38887 -30.88613 -29.51719 -28.55546 -27.73379 -25.14902 -24.30152 -22.84586 -22.80098 -21.13804 -20.45877 -19.60018 -18.35969 -18.18275 -18.06130 -17.33300 -17.02234 -16.67883 -16.34540 -16.25470 -15.69474 -15.16319 -14.92250 -14.68829 -14.53678 -14.50209 -14.26655 -14.18753 -13.88468 -13.48177 -13.38272 -13.08644 -12.90180 -12.78006 -12.55776 -12.29160 -11.97059 -11.65088 -11.63200 -11.52499 -11.15948 -10.95753 -10.86792 -10.79711 -10.50919 -10.45770 -10.39528 -10.30334 -9.62622 -8.81816 -8.53714 -8.17679 -8.09268 -6.50885 -3.92864 0.78665 0.94843 1.67196 2.21160 2.47622 2.65235 2.92666 3.11275 3.23531 3.29178 3.31317 3.72461 4.04024 4.11150 4.24255 4.40049 4.48728 4.55261 4.64039 4.75339 4.81342 4.87607 4.97186 5.01465 5.03609 5.13105 5.14141 5.17196 5.31330 5.35109 5.50543 5.54544 5.67069 5.68426 5.87571 6.03934 6.06344 6.10043 6.20243 6.37238 6.56884 6.92618 7.47344 7.75120 7.84000 7.94345 8.47479 9.06389 9.38340 9.88188 10.66385 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.001776 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.536288 B =15760.602009 C =16191.552270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.544 5.544 3 C 0.090 3.910 4 C -0.106 4.106 5 C -0.110 4.110 6 C -0.109 4.109 7 C -0.102 4.102 8 C 0.091 3.909 9 N -0.538 5.538 10 C 0.145 3.855 11 C -0.133 4.133 12 C 0.468 3.532 13 O -0.514 6.514 14 O -0.323 6.323 15 C 0.061 3.939 16 C 0.438 3.562 17 O -0.576 6.576 18 N -0.553 5.553 19 C -0.302 4.302 20 H 0.107 0.893 21 C 0.024 3.976 22 N -0.897 5.897 23 Si 0.934 3.066 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.679 3.321 28 O -0.548 6.548 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.395 0.605 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.056 21.101 -13.563 30.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.266 5.266 3 C -0.011 4.011 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.129 4.129 7 C -0.124 4.124 8 C -0.010 4.010 9 N -0.259 5.259 10 C 0.024 3.976 11 C -0.172 4.172 12 C 0.310 3.690 13 O -0.404 6.404 14 O -0.237 6.237 15 C -0.017 4.017 16 C 0.222 3.778 17 O -0.460 6.460 18 N -0.190 5.190 19 C -0.431 4.431 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.537 5.537 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.382 3.618 28 O -0.423 6.423 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.229 0.771 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.468 20.167 -13.209 30.369 hybrid contribution 0.724 -0.637 0.241 0.994 sum -17.744 19.531 -12.968 29.402 Atomic orbital electron populations 1.21742 0.74742 1.04409 1.03140 1.45015 1.07228 1.04554 1.69778 1.18092 0.88084 0.89329 1.05624 1.20050 1.00299 0.88456 1.03928 1.20884 0.91904 0.99424 1.00805 1.20905 0.97117 0.94287 1.00582 1.20167 0.97393 0.91803 1.02995 1.18120 0.94289 0.83163 1.05410 1.45145 1.06613 1.04736 1.69400 1.21331 0.86009 0.94561 0.95716 1.21684 0.95928 1.00165 0.99416 1.23246 0.83959 0.79657 0.82152 1.90674 1.61237 1.55401 1.33084 1.86546 1.44804 1.59444 1.32940 1.22780 0.86705 0.93325 0.98882 1.19321 0.84537 0.85125 0.88786 1.90568 1.57375 1.56592 1.41460 1.41712 1.26629 1.41102 1.09546 1.19779 1.12448 1.26332 0.84536 0.87555 1.25323 0.96276 0.96519 0.99706 1.69624 1.21652 1.32574 1.29880 0.85734 0.78494 0.78252 0.81485 1.19083 1.20610 1.20618 1.15975 0.80614 0.84644 0.80558 1.91069 1.76432 1.16781 1.58060 0.91275 0.89350 0.89865 0.85333 0.84967 0.84838 0.84976 0.87521 0.87903 0.86931 0.86798 0.89403 0.89398 0.77147 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.00 59.85 0.66 1.27 16 2 N -0.54 -5.28 3.18 -126.33 -0.40 -5.68 16 3 C 0.09 0.78 6.83 -83.80 -0.57 0.21 16 4 C -0.11 -0.64 10.02 -39.48 -0.40 -1.04 16 5 C -0.11 -0.57 10.03 -39.55 -0.40 -0.96 16 6 C -0.11 -0.61 10.03 -39.56 -0.40 -1.01 16 7 C -0.10 -0.74 10.02 -39.48 -0.40 -1.14 16 8 C 0.09 0.85 6.83 -83.80 -0.57 0.28 16 9 N -0.54 -5.89 2.78 -118.90 -0.33 -6.22 16 10 C 0.15 1.53 5.26 -4.04 -0.02 1.51 16 11 C -0.13 -1.52 6.13 -27.88 -0.17 -1.69 16 12 C 0.47 7.05 7.96 36.01 0.29 7.34 16 13 O -0.51 -8.43 15.73 -18.75 -0.29 -8.73 16 14 O -0.32 -5.97 9.75 -45.89 -0.45 -6.42 16 15 C 0.06 1.15 5.94 36.00 0.21 1.36 16 16 C 0.44 10.61 7.86 -10.99 -0.09 10.52 16 17 O -0.58 -16.15 16.08 -14.11 -0.23 -16.37 16 18 N -0.55 -14.02 5.29 -10.97 -0.06 -14.07 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 23 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.68 8.62 8.45 -87.17 -0.74 7.88 16 28 O -0.55 -8.72 17.48 5.20 0.09 -8.63 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.13 0.36 8.06 -52.49 -0.42 -0.07 16 34 H 0.13 0.47 8.06 -52.48 -0.42 0.04 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.11 1.25 7.99 -51.93 -0.41 0.83 16 37 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 41 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 42 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -36.15 384.34 -8.32 -44.47 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.31 Total: 6.92 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: -2.83 Total: 16.58 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.07 Total: -49.34 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.88 Total: -40.15 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.15 -8.32 -44.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.817 kcal (2) G-P(sol) polarization free energy of solvation -36.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds