Wall clock time and date at job start Wed Apr 1 2020 05:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36991 * 119.70536 * 2 1 4 4 C 1.47769 * 119.76066 * 359.97438 * 3 2 1 5 5 O 1.21460 * 119.99940 * 354.14071 * 4 3 2 6 6 O 1.34746 * 120.00203 * 174.13234 * 4 3 2 7 7 C 1.45194 * 117.00190 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47361 * 180.02562 * 7 6 4 9 9 O 1.21281 * 120.00076 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00122 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99821 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46824 * 90.00453 * 11 10 8 13 13 H 1.07997 * 120.00285 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00171 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00326 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47163 * 89.99848 * 16 14 12 18 18 H 1.48504 * 109.47300 * 209.99792 * 16 14 12 19 19 H 1.48499 * 109.47073 * 330.00113 * 16 14 12 20 20 C 1.46496 * 120.00045 * 0.02562 * 10 8 7 21 21 C 1.53000 * 109.47208 * 89.99754 * 20 10 8 22 22 C 1.47199 * 109.47154 * 179.97438 * 21 20 10 23 23 N 9.08433 * 60.28617 * 9.73897 * 2 1 3 24 24 C 1.36338 * 120.48096 * 179.72570 * 3 2 1 25 25 C 1.40410 * 119.90298 * 0.24700 * 24 3 2 26 26 C 1.36094 * 119.42449 * 0.02562 * 25 24 3 27 27 C 1.34671 * 119.70679 * 180.23394 * 2 1 3 28 28 O 1.21962 * 119.95907 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46893 * 64.72730 * 1 2 3 30 30 H 1.09011 * 109.47043 * 184.72267 * 1 2 3 31 31 H 1.09003 * 109.47710 * 304.72149 * 1 2 3 32 32 H 1.08999 * 109.47208 * 300.00276 * 7 6 4 33 33 H 1.09002 * 109.47430 * 59.99728 * 7 6 4 34 34 H 1.09000 * 109.47195 * 210.00208 * 11 10 8 35 35 H 1.08996 * 109.47252 * 330.00501 * 11 10 8 36 36 H 0.97003 * 120.00063 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47396 * 209.99433 * 20 10 8 38 38 H 1.09001 * 109.47163 * 329.99558 * 20 10 8 39 39 H 1.08997 * 109.47394 * 300.00201 * 21 20 10 40 40 H 1.09001 * 109.47218 * 59.99838 * 21 20 10 41 41 H 1.07999 * 120.04728 * 180.27314 * 24 3 2 42 42 H 1.08005 * 120.29103 * 180.02562 * 25 24 3 43 43 H 1.08005 * 120.23949 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1438 1.1899 0.0000 4 6 1.3931 2.4627 -0.0006 5 8 0.1833 2.4541 -0.1084 6 8 2.0506 3.6328 0.1187 7 6 1.2488 4.8432 0.1109 8 6 2.1492 6.0432 0.2527 9 8 3.3488 5.8931 0.3501 10 7 1.6217 7.2833 0.2701 11 6 2.4971 8.4499 0.4084 12 6 2.9228 8.9232 -0.9575 13 1 2.5757 8.4070 -1.8403 14 6 3.7547 10.0158 -1.0802 15 7 4.1762 10.6454 -0.0052 16 14 4.2830 10.6021 -2.7733 17 1 3.3068 11.6008 -3.2782 18 1 5.6278 11.2257 -2.6840 19 1 4.3343 9.4459 -3.7038 20 6 0.1728 7.4647 0.1518 21 6 -0.4580 7.4539 1.5457 22 6 -1.9137 7.6368 1.4268 23 7 -3.0378 7.7761 1.3346 24 6 3.5071 1.2083 0.0056 25 6 4.2235 0.0008 0.0062 26 6 3.5452 -1.1791 0.0006 27 6 2.1324 -1.1697 -0.0048 28 8 1.5164 -2.2223 -0.0086 29 1 -0.3633 0.4387 -0.9293 30 1 -0.3634 -1.0243 0.0846 31 1 -0.3634 0.5853 0.8447 32 1 0.7005 4.9098 -0.8287 33 1 0.5437 4.8174 0.9418 34 1 1.9596 9.2491 0.9187 35 1 3.3781 8.1762 0.9890 36 1 4.7618 11.4139 -0.0916 37 1 -0.0356 8.4180 -0.3338 38 1 -0.2474 6.6541 -0.4435 39 1 -0.2496 6.5006 2.0314 40 1 -0.0377 8.2645 2.1410 41 1 4.0351 2.1504 0.0100 42 1 5.3035 0.0081 0.0111 43 1 4.0830 -2.1157 0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757747191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:48 Heat of formation + Delta-G solvation = -73.915571 kcal Electronic energy + Delta-G solvation = -29594.940189 eV Core-core repulsion = 25221.222001 eV Total energy + Delta-G solvation = -4373.718189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.97269 -40.58131 -39.31700 -37.34399 -37.01869 -36.76618 -35.40876 -34.78328 -33.03154 -31.22288 -31.01606 -29.33313 -27.95527 -26.94134 -25.37333 -24.20292 -23.17062 -22.84019 -21.85551 -19.14978 -18.53624 -17.93387 -17.70448 -17.59366 -17.15663 -16.89397 -16.56203 -16.41657 -16.15772 -15.82592 -15.28633 -14.98819 -14.84992 -14.73290 -14.36034 -13.88298 -13.61454 -13.44012 -13.23641 -13.01266 -12.89694 -12.74243 -12.57250 -12.54156 -12.36325 -12.24085 -12.12519 -11.88641 -11.41498 -11.21194 -11.07895 -10.92640 -10.88237 -10.72859 -10.51074 -10.35280 -10.29675 -9.84346 -9.30667 -8.57286 -8.45642 -8.08213 -6.19259 -4.24593 -0.13011 1.22095 1.58066 2.09913 2.45647 2.62488 2.72845 2.95957 3.22310 3.22811 3.30178 3.32143 3.40131 3.90317 4.14520 4.20286 4.32914 4.43981 4.62167 4.68655 4.78121 4.85314 4.88516 4.98835 5.01741 5.10654 5.15420 5.16696 5.31107 5.41142 5.44904 5.58557 5.66435 5.78950 5.84397 5.91446 5.96597 6.55088 6.71284 7.13794 7.15207 7.25867 7.48932 7.59825 7.75882 7.97083 8.03860 8.57295 8.80267 9.41539 10.88905 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.002703 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.669564 B =10357.087743 C =12411.127630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.479 5.479 3 C 0.117 3.883 4 C 0.509 3.491 5 O -0.491 6.491 6 O -0.312 6.312 7 C 0.047 3.953 8 C 0.510 3.490 9 O -0.507 6.507 10 N -0.590 5.590 11 C 0.246 3.754 12 C -0.533 4.533 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.111 3.889 21 C -0.051 4.051 22 C 0.215 3.785 23 N -0.440 5.440 24 C -0.135 4.135 25 C -0.034 4.034 26 C -0.205 4.205 27 C 0.515 3.485 28 O -0.547 6.547 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.265 0.735 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.169 0.831 42 H 0.150 0.850 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 -16.393 2.389 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.194 5.194 3 C 0.009 3.991 4 C 0.352 3.648 5 O -0.380 6.380 6 O -0.225 6.225 7 C -0.030 4.030 8 C 0.294 3.706 9 O -0.381 6.381 10 N -0.323 5.323 11 C 0.128 3.872 12 C -0.572 4.572 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.015 4.015 21 C -0.092 4.092 22 C -0.104 4.104 23 N -0.118 5.118 24 C -0.160 4.160 25 C -0.055 4.055 26 C -0.227 4.227 27 C 0.316 3.684 28 O -0.429 6.429 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.187 0.813 42 H 0.167 0.833 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.175 -16.709 2.341 17.648 hybrid contribution 0.544 0.601 -0.912 1.220 sum -4.631 -16.108 1.429 16.821 Atomic orbital electron populations 1.22365 0.75997 1.04963 1.04766 1.45383 1.09932 1.04793 1.59260 1.18866 0.91882 0.84105 1.04212 1.20602 0.85672 0.84480 0.74054 1.90901 1.14458 1.87845 1.44766 1.86585 1.40044 1.13445 1.82446 1.23157 0.93564 0.81419 1.04896 1.19626 0.88589 0.83482 0.78909 1.90753 1.14665 1.85019 1.47703 1.48165 1.06249 1.06783 1.71090 1.19446 0.89550 0.80257 0.97916 1.21382 1.30173 1.13170 0.92466 0.92251 1.24908 0.95591 0.96307 0.97051 1.69910 1.34202 1.20801 1.28133 0.86499 0.78071 0.78863 0.84026 1.20615 1.21043 1.19825 1.21422 0.81465 1.04879 0.93725 1.19881 0.81796 1.05971 1.01566 1.29042 0.94959 0.93025 0.93332 1.81244 1.12965 1.09173 1.08386 1.21394 0.90934 1.01295 1.02331 1.21567 1.01618 0.91205 0.91110 1.22540 0.92563 1.00595 1.06982 1.17300 0.89294 0.82316 0.79533 1.90952 1.69831 1.28844 1.53274 0.89573 0.88524 0.89484 0.87921 0.88170 0.94238 0.93251 0.92530 0.88067 0.90615 0.87676 0.86155 0.81305 0.83273 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 8.93 59.85 0.53 1.12 16 2 N -0.48 -5.16 3.02 -122.80 -0.37 -5.53 16 3 C 0.12 1.17 6.63 -82.35 -0.55 0.63 16 4 C 0.51 5.65 7.82 34.63 0.27 5.92 16 5 O -0.49 -5.78 13.01 -19.23 -0.25 -6.03 16 6 O -0.31 -3.83 8.94 -47.30 -0.42 -4.26 16 7 C 0.05 0.55 4.51 36.00 0.16 0.71 16 8 C 0.51 8.33 7.75 -10.99 -0.09 8.25 16 9 O -0.51 -10.67 16.08 -14.10 -0.23 -10.90 16 10 N -0.59 -9.55 2.46 -175.06 -0.43 -9.98 16 11 C 0.25 5.34 5.16 -5.19 -0.03 5.31 16 12 C -0.53 -13.33 9.39 -34.44 -0.32 -13.65 16 13 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -24.25 13.29 55.43 0.74 -23.52 16 16 Si 0.90 20.27 29.54 -169.99 -5.02 15.24 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 20 C 0.11 1.27 5.17 -4.04 -0.02 1.25 16 21 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 22 C 0.21 2.37 15.43 -20.75 -0.32 2.05 16 23 N -0.44 -6.15 18.54 42.17 0.78 -5.37 16 24 C -0.14 -1.13 9.57 -39.45 -0.38 -1.51 16 25 C -0.03 -0.23 10.08 -39.53 -0.40 -0.63 16 26 C -0.20 -1.73 10.00 -39.19 -0.39 -2.12 16 27 C 0.51 6.00 7.43 -15.15 -0.11 5.89 16 28 O -0.55 -8.10 16.40 4.95 0.08 -8.02 16 29 H 0.09 0.82 7.37 -51.93 -0.38 0.44 16 30 H 0.10 0.96 6.88 -51.92 -0.36 0.60 16 31 H 0.09 0.81 7.08 -51.93 -0.37 0.44 16 32 H 0.10 1.05 7.40 -51.93 -0.38 0.67 16 33 H 0.10 0.89 7.18 -51.93 -0.37 0.52 16 34 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 35 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 38 H 0.08 0.70 6.44 -51.93 -0.33 0.36 16 39 H 0.11 0.72 7.22 -51.93 -0.38 0.34 16 40 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.17 1.34 7.52 -52.49 -0.39 0.94 16 42 H 0.15 0.55 8.06 -52.48 -0.42 0.12 16 43 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -34.38 382.97 -6.27 -40.65 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.01 Total: -2.23 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -1.91 Total: 14.17 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.72 Total: -44.40 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.82 Total: -29.20 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.38 -6.27 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757747191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.267 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds