Wall clock time and date at job start Wed Apr 1 2020 05:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36991 * 119.70536 * 2 1 4 4 C 1.47769 * 119.76066 * 359.97438 * 3 2 1 5 5 O 1.21460 * 119.99940 * 354.14071 * 4 3 2 6 6 O 1.34746 * 120.00203 * 174.13234 * 4 3 2 7 7 C 1.45194 * 117.00190 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47361 * 180.02562 * 7 6 4 9 9 O 1.21281 * 120.00076 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00122 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99821 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46824 * 90.00453 * 11 10 8 13 13 H 1.07997 * 120.00285 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00171 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00326 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47163 * 89.99848 * 16 14 12 18 18 H 1.48504 * 109.47300 * 209.99792 * 16 14 12 19 19 H 1.48499 * 109.47073 * 330.00113 * 16 14 12 20 20 C 1.46496 * 120.00045 * 0.02562 * 10 8 7 21 21 C 1.53000 * 109.47208 * 89.99754 * 20 10 8 22 22 C 1.47199 * 109.47154 * 179.97438 * 21 20 10 23 23 N 9.08433 * 60.28617 * 9.73897 * 2 1 3 24 24 C 1.36338 * 120.48096 * 179.72570 * 3 2 1 25 25 C 1.40410 * 119.90298 * 0.24700 * 24 3 2 26 26 C 1.36094 * 119.42449 * 0.02562 * 25 24 3 27 27 C 1.34671 * 119.70679 * 180.23394 * 2 1 3 28 28 O 1.21962 * 119.95907 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46893 * 64.72730 * 1 2 3 30 30 H 1.09011 * 109.47043 * 184.72267 * 1 2 3 31 31 H 1.09003 * 109.47710 * 304.72149 * 1 2 3 32 32 H 1.08999 * 109.47208 * 300.00276 * 7 6 4 33 33 H 1.09002 * 109.47430 * 59.99728 * 7 6 4 34 34 H 1.09000 * 109.47195 * 210.00208 * 11 10 8 35 35 H 1.08996 * 109.47252 * 330.00501 * 11 10 8 36 36 H 0.97003 * 120.00063 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47396 * 209.99433 * 20 10 8 38 38 H 1.09001 * 109.47163 * 329.99558 * 20 10 8 39 39 H 1.08997 * 109.47394 * 300.00201 * 21 20 10 40 40 H 1.09001 * 109.47218 * 59.99838 * 21 20 10 41 41 H 1.07999 * 120.04728 * 180.27314 * 24 3 2 42 42 H 1.08005 * 120.29103 * 180.02562 * 25 24 3 43 43 H 1.08005 * 120.23949 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1438 1.1899 0.0000 4 6 1.3931 2.4627 -0.0006 5 8 0.1833 2.4541 -0.1084 6 8 2.0506 3.6328 0.1187 7 6 1.2488 4.8432 0.1109 8 6 2.1492 6.0432 0.2527 9 8 3.3488 5.8931 0.3501 10 7 1.6217 7.2833 0.2701 11 6 2.4971 8.4499 0.4084 12 6 2.9228 8.9232 -0.9575 13 1 2.5757 8.4070 -1.8403 14 6 3.7547 10.0158 -1.0802 15 7 4.1762 10.6454 -0.0052 16 14 4.2830 10.6021 -2.7733 17 1 3.3068 11.6008 -3.2782 18 1 5.6278 11.2257 -2.6840 19 1 4.3343 9.4459 -3.7038 20 6 0.1728 7.4647 0.1518 21 6 -0.4580 7.4539 1.5457 22 6 -1.9137 7.6368 1.4268 23 7 -3.0378 7.7761 1.3346 24 6 3.5071 1.2083 0.0056 25 6 4.2235 0.0008 0.0062 26 6 3.5452 -1.1791 0.0006 27 6 2.1324 -1.1697 -0.0048 28 8 1.5164 -2.2223 -0.0086 29 1 -0.3633 0.4387 -0.9293 30 1 -0.3634 -1.0243 0.0846 31 1 -0.3634 0.5853 0.8447 32 1 0.7005 4.9098 -0.8287 33 1 0.5437 4.8174 0.9418 34 1 1.9596 9.2491 0.9187 35 1 3.3781 8.1762 0.9890 36 1 4.7618 11.4139 -0.0916 37 1 -0.0356 8.4180 -0.3338 38 1 -0.2474 6.6541 -0.4435 39 1 -0.2496 6.5006 2.0314 40 1 -0.0377 8.2645 2.1410 41 1 4.0351 2.1504 0.0100 42 1 5.3035 0.0081 0.0111 43 1 4.0830 -2.1157 0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757747191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:47 Heat of formation + Delta-G solvation = -94.683385 kcal Electronic energy + Delta-G solvation = -29595.840749 eV Core-core repulsion = 25221.222001 eV Total energy + Delta-G solvation = -4374.618749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.77365 -41.52002 -40.53216 -38.25995 -37.98903 -37.68028 -36.68902 -35.50876 -34.85515 -32.23149 -32.01548 -30.52296 -28.71714 -28.42550 -26.21149 -25.34220 -24.56742 -23.73549 -22.73918 -20.34258 -19.45569 -18.90300 -18.63437 -18.39642 -18.30609 -18.01858 -17.70909 -17.56807 -17.04388 -17.00653 -16.44332 -16.05724 -15.86726 -15.66700 -15.61165 -14.89061 -14.71494 -14.46112 -14.26547 -14.05071 -13.84575 -13.76671 -13.59380 -13.55427 -13.43800 -13.23183 -13.14964 -12.94419 -12.90894 -12.71651 -12.49218 -12.17674 -12.08020 -11.77214 -11.76786 -11.64621 -11.21832 -11.17738 -10.67463 -10.55244 -9.54413 -9.24551 -8.15784 -6.27094 -0.85305 0.49882 0.71636 1.27364 1.43255 1.45910 1.54177 1.60489 1.64689 1.82032 1.85214 2.26613 2.46457 2.49261 3.01569 3.17374 3.26279 3.49087 3.55710 3.81428 3.90812 4.01086 4.06545 4.11566 4.15716 4.21849 4.35000 4.43876 4.55552 4.64562 4.80645 4.83333 4.92686 4.97037 5.05097 5.13631 5.16095 5.33282 5.36725 5.59116 5.77851 5.86135 6.14155 6.29093 6.60143 6.65161 6.77804 6.82541 7.28417 7.45505 8.91045 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.002703 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.669564 B =10357.087743 C =12411.127630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.482 5.482 3 C 0.095 3.905 4 C 0.516 3.484 5 O -0.499 6.499 6 O -0.324 6.324 7 C 0.054 3.946 8 C 0.507 3.493 9 O -0.563 6.563 10 N -0.589 5.589 11 C 0.260 3.740 12 C -0.540 4.540 13 H 0.056 0.944 14 C 0.014 3.986 15 N -0.925 5.925 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.107 3.893 21 C -0.040 4.040 22 C 0.245 3.755 23 N -0.490 5.490 24 C -0.119 4.119 25 C -0.016 4.016 26 C -0.209 4.209 27 C 0.501 3.499 28 O -0.592 6.592 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.041 0.959 35 H 0.011 0.989 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.177 0.823 42 H 0.189 0.811 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -17.045 1.929 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.196 5.196 3 C -0.011 4.011 4 C 0.360 3.640 5 O -0.389 6.389 6 O -0.238 6.238 7 C -0.022 4.022 8 C 0.294 3.706 9 O -0.441 6.441 10 N -0.321 5.321 11 C 0.140 3.860 12 C -0.579 4.579 13 H 0.074 0.926 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.018 4.018 21 C -0.081 4.081 22 C -0.073 4.073 23 N -0.168 5.168 24 C -0.143 4.143 25 C -0.037 4.037 26 C -0.230 4.230 27 C 0.304 3.696 28 O -0.478 6.478 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.059 0.941 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.155 0.845 40 H 0.144 0.856 41 H 0.194 0.806 42 H 0.206 0.794 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.148 -17.342 1.873 18.187 hybrid contribution 0.577 0.819 -0.757 1.256 sum -4.571 -16.522 1.117 17.179 Atomic orbital electron populations 1.22344 0.75943 1.04615 1.04985 1.45395 1.10213 1.04937 1.59049 1.18888 0.92442 0.83434 1.06338 1.20625 0.85554 0.84274 0.73595 1.90895 1.14760 1.87859 1.45358 1.86564 1.40643 1.13845 1.82774 1.23114 0.92317 0.79307 1.07467 1.20359 0.88469 0.84490 0.77262 1.90727 1.17338 1.85922 1.50125 1.47972 1.07707 1.05603 1.70819 1.18899 0.89307 0.82063 0.95748 1.21749 1.29629 1.12762 0.93753 0.92588 1.25663 0.95973 0.96827 1.00110 1.70010 1.35148 1.21407 1.29877 0.85605 0.77653 0.78425 0.80266 1.19590 1.21219 1.19722 1.21643 0.78623 1.05774 0.95718 1.19871 0.80048 1.07967 1.00203 1.29187 0.94887 0.91400 0.91802 1.81289 1.14581 1.11035 1.09944 1.21683 0.90372 1.02359 0.99883 1.21924 1.03349 0.89606 0.88800 1.22706 0.91003 1.02215 1.07093 1.17842 0.90506 0.81896 0.79368 1.90922 1.70812 1.30197 1.55822 0.89444 0.89200 0.89027 0.85787 0.84627 0.94131 0.97106 0.92594 0.89022 0.87512 0.84542 0.85628 0.80585 0.79353 0.80791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.19 8.93 127.77 1.14 2.33 16 2 N -0.48 -10.00 3.02 -660.60 -1.99 -11.99 16 3 C 0.10 1.76 6.63 40.42 0.27 2.03 16 4 C 0.52 10.38 7.82 70.34 0.55 10.93 16 5 O -0.50 -10.64 13.01 19.96 0.26 -10.38 16 6 O -0.32 -7.25 8.94 -50.17 -0.45 -7.70 16 7 C 0.05 1.11 4.51 71.23 0.32 1.43 16 8 C 0.51 15.88 7.75 87.66 0.68 16.56 16 9 O -0.56 -23.75 16.08 15.77 0.25 -23.49 16 10 N -0.59 -18.32 2.46 -826.16 -2.03 -20.35 16 11 C 0.26 11.38 5.16 85.63 0.44 11.82 16 12 C -0.54 -27.07 9.39 25.60 0.24 -26.83 16 13 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 14 C 0.01 0.71 5.46 84.65 0.46 1.18 16 15 N -0.92 -50.95 13.29 21.45 0.28 -50.67 16 16 Si 0.95 41.46 29.54 68.60 2.03 43.48 16 17 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 18 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.11 2.17 5.17 86.38 0.45 2.61 16 21 C -0.04 -0.59 6.03 28.79 0.17 -0.42 16 22 C 0.24 4.81 15.43 89.44 1.38 6.19 16 23 N -0.49 -12.94 18.54 20.01 0.37 -12.57 16 24 C -0.12 -1.69 9.57 22.36 0.21 -1.47 16 25 C -0.02 -0.16 10.08 22.30 0.22 0.06 16 26 C -0.21 -3.10 10.00 22.52 0.23 -2.88 16 27 C 0.50 11.40 7.43 85.01 0.63 12.03 16 28 O -0.59 -17.80 16.40 -5.19 -0.09 -17.89 16 29 H 0.09 1.62 7.37 -2.39 -0.02 1.61 16 30 H 0.09 1.83 6.88 -2.38 -0.02 1.82 16 31 H 0.09 1.64 7.08 -2.39 -0.02 1.62 16 32 H 0.12 2.06 7.40 -2.39 -0.02 2.04 16 33 H 0.14 1.81 7.18 -2.39 -0.02 1.80 16 34 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 35 H 0.01 0.56 7.42 -2.39 -0.02 0.54 16 36 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 37 H 0.09 2.09 8.07 -2.39 -0.02 2.07 16 38 H 0.11 1.55 6.44 -2.39 -0.02 1.53 16 39 H 0.14 1.26 7.22 -2.39 -0.02 1.24 16 40 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.18 2.33 7.52 -2.91 -0.02 2.31 16 42 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 43 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -77.91 382.97 7.10 -70.81 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.06 Total: 5.18 kcal Atomic # 6 Polarization: 28.17 SS G_CDS: 7.40 Total: 35.57 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -3.37 Total: -95.57 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -0.02 Total: -59.47 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -77.91 7.10 -70.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757747191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.878 kcal (2) G-P(sol) polarization free energy of solvation -77.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds