Wall clock time and date at job start Wed Apr 1 2020 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46540 * 111.00000 * 2 1 4 4 C 1.52591 * 110.49642 * 279.18699 * 3 2 1 5 5 C 1.50576 * 110.32340 * 43.86420 * 4 3 2 6 6 O 1.21295 * 120.27591 * 103.90371 * 5 4 3 7 7 N 1.34933 * 119.45237 * 283.92367 * 5 4 3 8 8 C 1.40371 * 118.41473 * 3.40352 * 7 5 4 9 9 C 1.38013 * 120.33329 * 229.86364 * 8 7 5 10 10 C 1.39889 * 119.74440 * 178.17076 * 9 8 7 11 11 C 1.47392 * 120.06982 * 180.02562 * 10 9 8 12 12 O 1.21516 * 120.00069 * 359.97438 * 11 10 9 13 13 O 1.34761 * 120.00066 * 179.97438 * 11 10 9 14 14 C 1.45204 * 116.99792 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46861 * 179.97438 * 14 13 11 16 16 O 1.21295 * 120.00150 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99982 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99765 * 180.02562 * 17 15 14 19 19 H 1.07992 * 120.00391 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99516 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00399 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99896 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46877 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47254 * 120.00064 * 22 20 18 25 25 H 1.48502 * 109.47124 * 240.00420 * 22 20 18 26 26 C 1.39823 * 119.86018 * 359.97438 * 10 9 8 27 27 C 1.37687 * 120.13309 * 0.55617 * 26 10 9 28 28 C 1.38980 * 111.00053 * 234.08756 * 2 1 3 29 29 H 1.09004 * 109.47300 * 177.90848 * 1 2 3 30 30 H 1.08999 * 109.47195 * 297.91155 * 1 2 3 31 31 H 1.08998 * 109.47722 * 57.90818 * 1 2 3 32 32 H 1.08999 * 109.26766 * 39.45109 * 3 2 1 33 33 H 1.09005 * 109.26780 * 158.92718 * 3 2 1 34 34 H 1.08995 * 109.32710 * 164.12260 * 4 3 2 35 35 H 1.08997 * 109.33081 * 283.60094 * 4 3 2 36 36 H 0.96995 * 120.79385 * 183.42615 * 7 5 4 37 37 H 1.08003 * 120.12326 * 358.19536 * 9 8 7 38 38 H 1.08994 * 109.47347 * 300.00154 * 14 13 11 39 39 H 1.08997 * 109.47097 * 60.00366 * 14 13 11 40 40 H 0.96996 * 120.00095 * 359.97438 * 17 15 14 41 41 H 0.97001 * 120.00186 * 180.02562 * 21 20 18 42 42 H 1.07999 * 119.93358 * 180.27628 * 26 10 9 43 43 H 1.07998 * 119.93769 * 179.75829 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9941 1.3681 0.0000 4 6 1.9725 1.9487 -1.4110 5 6 0.6685 1.6239 -2.0902 6 8 -0.1865 2.4757 -2.2117 7 7 0.4587 0.3774 -2.5624 8 6 1.4437 -0.5969 -2.3367 9 6 1.9109 -1.3704 -3.3798 10 6 2.9199 -2.3113 -3.1485 11 6 3.4246 -3.1408 -4.2573 12 8 2.9637 -3.0082 -5.3739 13 8 4.3970 -4.0464 -4.0330 14 6 4.8455 -4.8278 -5.1717 15 6 5.9282 -5.7797 -4.7326 16 8 6.2869 -5.7974 -3.5740 17 7 6.4987 -6.6105 -5.6274 18 6 7.4833 -7.4769 -5.2277 19 1 7.8021 -7.4932 -4.1960 20 6 8.0710 -8.3338 -6.1502 21 7 7.6835 -8.3136 -7.4056 22 14 9.4130 -9.5137 -5.6059 23 1 9.6651 -9.3402 -4.1527 24 1 8.9816 -10.9099 -5.8697 25 1 10.6589 -9.2292 -6.3622 26 6 3.4495 -2.4624 -1.8632 27 6 2.9718 -1.6954 -0.8243 28 6 1.9670 -0.7610 -1.0509 29 1 -0.3634 -1.0270 -0.0375 30 1 -0.3633 0.4811 0.9081 31 1 -0.3634 0.5459 -0.8706 32 1 1.3812 1.9886 0.6538 33 1 3.0194 1.3598 0.3700 34 1 2.0918 3.0307 -1.3577 35 1 2.7949 1.5256 -1.9878 36 1 -0.3531 0.1599 -3.0466 37 1 1.4992 -1.2495 -4.3710 38 1 4.0067 -5.3932 -5.5774 39 1 5.2384 -4.1601 -5.9384 40 1 6.2121 -6.5961 -6.5539 41 1 8.0936 -8.9121 -8.0495 42 1 4.2316 -3.1852 -1.6842 43 1 3.3804 -1.8175 0.1679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762904058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:03 Heat of formation + Delta-G solvation = -90.069013 kcal Electronic energy + Delta-G solvation = -29538.127035 eV Core-core repulsion = 25163.708380 eV Total energy + Delta-G solvation = -4374.418655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29873 -40.43951 -39.05713 -38.18334 -37.15532 -36.12183 -35.43361 -34.03648 -32.13167 -31.42099 -30.89495 -30.06066 -28.36889 -26.41430 -25.50749 -24.56906 -23.23304 -22.42859 -21.28901 -20.45497 -19.62894 -18.66187 -18.11371 -17.71019 -17.19758 -17.05113 -16.74710 -16.38178 -16.19348 -15.94926 -15.55229 -14.93098 -14.71794 -14.61859 -14.17799 -14.07317 -14.03594 -13.68465 -13.63884 -13.27152 -13.09163 -12.86109 -12.73862 -12.29685 -12.22669 -12.11673 -11.85595 -11.74001 -11.65170 -11.17853 -10.85985 -10.65967 -10.49217 -10.44321 -10.41472 -10.32691 -9.64785 -9.53327 -8.92054 -8.75558 -8.56730 -8.11705 -6.53045 -3.95176 0.22155 0.78244 1.89598 2.30291 2.42042 2.70325 3.09551 3.14283 3.22162 3.29335 3.34040 3.69972 3.83809 4.07862 4.21887 4.35506 4.37566 4.47620 4.71915 4.81273 4.82718 4.90564 4.94543 4.99749 5.10082 5.11919 5.17744 5.24960 5.40056 5.44400 5.45562 5.64594 5.65255 5.77119 5.93886 6.01251 6.09724 6.22401 6.26274 6.45225 6.51009 6.80209 7.45169 7.47150 7.72209 7.91671 8.44668 9.03963 9.35864 9.85176 10.64145 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.029389 B = 0.001884 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.513809 B =14861.340487 C =15444.625506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.505 5.505 3 C 0.069 3.931 4 C -0.182 4.182 5 C 0.530 3.470 6 O -0.526 6.526 7 N -0.676 5.676 8 C 0.086 3.914 9 C -0.058 4.058 10 C -0.103 4.103 11 C 0.505 3.495 12 O -0.509 6.509 13 O -0.319 6.319 14 C 0.061 3.939 15 C 0.438 3.562 16 O -0.576 6.576 17 N -0.552 5.552 18 C -0.302 4.302 19 H 0.107 0.893 20 C 0.024 3.976 21 N -0.896 5.896 22 Si 0.933 3.067 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.052 4.052 27 C -0.091 4.091 28 C 0.111 3.889 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.413 0.587 37 H 0.144 0.856 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.395 0.605 41 H 0.274 0.726 42 H 0.156 0.844 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 17.816 11.676 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 N -0.224 5.224 3 C -0.057 4.057 4 C -0.224 4.224 5 C 0.319 3.681 6 O -0.401 6.401 7 N -0.327 5.327 8 C -0.010 4.010 9 C -0.079 4.079 10 C -0.105 4.105 11 C 0.349 3.651 12 O -0.399 6.399 13 O -0.233 6.233 14 C -0.016 4.016 15 C 0.223 3.777 16 O -0.460 6.460 17 N -0.189 5.189 18 C -0.431 4.431 19 H 0.125 0.875 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.071 4.071 27 C -0.110 4.110 28 C 0.014 3.986 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.253 0.747 37 H 0.162 0.838 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.229 0.771 41 H 0.084 0.916 42 H 0.173 0.827 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.076 18.080 12.437 25.544 hybrid contribution -0.204 -0.505 -1.733 1.817 sum -13.279 17.575 10.703 24.491 Atomic orbital electron populations 1.22962 0.85555 1.03561 1.02733 1.58898 1.09066 1.12610 1.41851 1.22154 1.03189 0.86463 0.93884 1.22429 0.95624 1.05317 0.99010 1.20645 0.89198 0.80830 0.77384 1.90804 1.46252 1.46547 1.56518 1.43970 1.21457 1.09056 1.58178 1.18099 0.95226 0.94476 0.93206 1.21001 0.94136 0.93978 0.98755 1.18987 0.99747 0.98858 0.92951 1.21010 0.77572 0.78656 0.87838 1.90845 1.57374 1.67150 1.24559 1.86588 1.49909 1.47010 1.39773 1.22798 0.98430 0.93864 0.86507 1.19282 0.86166 0.85054 0.87194 1.90560 1.65619 1.71663 1.18162 1.41714 1.33945 1.32799 1.10481 1.19774 1.12669 1.13482 0.97167 0.87508 1.25323 0.99068 0.98511 0.94906 1.69618 1.42912 1.38932 1.02229 0.85739 0.79804 0.79356 0.79093 1.19059 1.20623 1.20616 1.21696 0.97716 0.97125 0.90565 1.20952 0.95877 0.93934 1.00220 1.18888 0.96681 0.96296 0.86743 0.90657 0.90527 0.92714 0.89095 0.88242 0.87005 0.88424 0.74673 0.83798 0.89362 0.89371 0.77144 0.91649 0.82674 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 8.65 60.06 0.52 0.51 16 2 N -0.51 -3.63 4.84 -179.39 -0.87 -4.50 16 3 C 0.07 0.39 6.04 -4.23 -0.03 0.36 16 4 C -0.18 -1.20 5.41 -28.15 -0.15 -1.35 16 5 C 0.53 4.81 5.01 -10.98 -0.05 4.75 16 6 O -0.53 -6.51 17.88 5.54 0.10 -6.41 16 7 N -0.68 -5.36 3.75 -9.74 -0.04 -5.39 16 8 C 0.09 0.73 5.11 -83.45 -0.43 0.30 16 9 C -0.06 -0.57 9.51 -39.05 -0.37 -0.94 16 10 C -0.10 -1.20 5.88 -104.96 -0.62 -1.82 16 11 C 0.50 7.61 7.89 34.46 0.27 7.88 16 12 O -0.51 -8.50 16.13 -19.28 -0.31 -8.81 16 13 O -0.32 -5.55 8.99 -47.34 -0.43 -5.97 16 14 C 0.06 1.12 5.95 36.01 0.21 1.33 16 15 C 0.44 10.17 7.86 -10.98 -0.09 10.08 16 16 O -0.58 -15.33 16.08 -14.11 -0.23 -15.56 16 17 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 18 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 19 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -23.66 13.05 55.50 0.72 -22.93 16 22 Si 0.93 20.32 29.55 -169.99 -5.02 15.29 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.05 -0.52 9.60 -39.19 -0.38 -0.90 16 27 C -0.09 -0.74 9.95 -39.47 -0.39 -1.14 16 28 C 0.11 0.90 4.31 -83.73 -0.36 0.54 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.05 0.44 3.63 -51.93 -0.19 0.25 16 32 H 0.09 0.44 7.88 -51.93 -0.41 0.03 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.64 7.32 -51.93 -0.38 0.26 16 36 H 0.41 2.83 8.95 -40.82 -0.37 2.46 16 37 H 0.14 1.40 7.65 -52.48 -0.40 1.00 16 38 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 41 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.16 1.66 7.59 -52.49 -0.40 1.27 16 43 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -33.27 366.40 -7.63 -40.90 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.93 Total: 9.63 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -2.10 Total: 11.87 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.24 Total: -46.46 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.86 Total: -36.76 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.27 -7.63 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762904058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.168 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds