Wall clock time and date at job start Wed Apr 1 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46540 * 111.00000 * 2 1 4 4 C 1.52591 * 110.49642 * 279.18699 * 3 2 1 5 5 C 1.50576 * 110.32340 * 43.86420 * 4 3 2 6 6 O 1.21295 * 120.27591 * 103.90371 * 5 4 3 7 7 N 1.34933 * 119.45237 * 283.92367 * 5 4 3 8 8 C 1.40371 * 118.41473 * 3.40352 * 7 5 4 9 9 C 1.38013 * 120.33329 * 229.86364 * 8 7 5 10 10 C 1.39889 * 119.74440 * 178.17076 * 9 8 7 11 11 C 1.47392 * 120.06982 * 180.02562 * 10 9 8 12 12 O 1.21516 * 120.00069 * 359.97438 * 11 10 9 13 13 O 1.34761 * 120.00066 * 179.97438 * 11 10 9 14 14 C 1.45204 * 116.99792 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46861 * 179.97438 * 14 13 11 16 16 O 1.21295 * 120.00150 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99982 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99765 * 180.02562 * 17 15 14 19 19 H 1.07992 * 120.00391 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99516 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00399 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99896 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46877 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47254 * 120.00064 * 22 20 18 25 25 H 1.48502 * 109.47124 * 240.00420 * 22 20 18 26 26 C 1.39823 * 119.86018 * 359.97438 * 10 9 8 27 27 C 1.37687 * 120.13309 * 0.55617 * 26 10 9 28 28 C 1.38980 * 111.00053 * 234.08756 * 2 1 3 29 29 H 1.09004 * 109.47300 * 177.90848 * 1 2 3 30 30 H 1.08999 * 109.47195 * 297.91155 * 1 2 3 31 31 H 1.08998 * 109.47722 * 57.90818 * 1 2 3 32 32 H 1.08999 * 109.26766 * 39.45109 * 3 2 1 33 33 H 1.09005 * 109.26780 * 158.92718 * 3 2 1 34 34 H 1.08995 * 109.32710 * 164.12260 * 4 3 2 35 35 H 1.08997 * 109.33081 * 283.60094 * 4 3 2 36 36 H 0.96995 * 120.79385 * 183.42615 * 7 5 4 37 37 H 1.08003 * 120.12326 * 358.19536 * 9 8 7 38 38 H 1.08994 * 109.47347 * 300.00154 * 14 13 11 39 39 H 1.08997 * 109.47097 * 60.00366 * 14 13 11 40 40 H 0.96996 * 120.00095 * 359.97438 * 17 15 14 41 41 H 0.97001 * 120.00186 * 180.02562 * 21 20 18 42 42 H 1.07999 * 119.93358 * 180.27628 * 26 10 9 43 43 H 1.07998 * 119.93769 * 179.75829 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9941 1.3681 0.0000 4 6 1.9725 1.9487 -1.4110 5 6 0.6685 1.6239 -2.0902 6 8 -0.1865 2.4757 -2.2117 7 7 0.4587 0.3774 -2.5624 8 6 1.4437 -0.5969 -2.3367 9 6 1.9109 -1.3704 -3.3798 10 6 2.9199 -2.3113 -3.1485 11 6 3.4246 -3.1408 -4.2573 12 8 2.9637 -3.0082 -5.3739 13 8 4.3970 -4.0464 -4.0330 14 6 4.8455 -4.8278 -5.1717 15 6 5.9282 -5.7797 -4.7326 16 8 6.2869 -5.7974 -3.5740 17 7 6.4987 -6.6105 -5.6274 18 6 7.4833 -7.4769 -5.2277 19 1 7.8021 -7.4932 -4.1960 20 6 8.0710 -8.3338 -6.1502 21 7 7.6835 -8.3136 -7.4056 22 14 9.4130 -9.5137 -5.6059 23 1 9.6651 -9.3402 -4.1527 24 1 8.9816 -10.9099 -5.8697 25 1 10.6589 -9.2292 -6.3622 26 6 3.4495 -2.4624 -1.8632 27 6 2.9718 -1.6954 -0.8243 28 6 1.9670 -0.7610 -1.0509 29 1 -0.3634 -1.0270 -0.0375 30 1 -0.3633 0.4811 0.9081 31 1 -0.3634 0.5459 -0.8706 32 1 1.3812 1.9886 0.6538 33 1 3.0194 1.3598 0.3700 34 1 2.0918 3.0307 -1.3577 35 1 2.7949 1.5256 -1.9878 36 1 -0.3531 0.1599 -3.0466 37 1 1.4992 -1.2495 -4.3710 38 1 4.0067 -5.3932 -5.5774 39 1 5.2384 -4.1601 -5.9384 40 1 6.2121 -6.5961 -6.5539 41 1 8.0936 -8.9121 -8.0495 42 1 4.2316 -3.1852 -1.6842 43 1 3.3804 -1.8175 0.1679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762904058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:02 Heat of formation + Delta-G solvation = -113.001475 kcal Electronic energy + Delta-G solvation = -29539.121461 eV Core-core repulsion = 25163.708380 eV Total energy + Delta-G solvation = -4375.413081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.98087 -41.66554 -40.15092 -39.71775 -37.96475 -37.40569 -36.16394 -36.01249 -33.40764 -32.75332 -31.64321 -30.92376 -29.79765 -27.12630 -26.66117 -25.95125 -24.05791 -23.29786 -21.97746 -21.44760 -21.30410 -20.06544 -19.60926 -18.48355 -18.20243 -17.89447 -17.77995 -17.71953 -17.30197 -16.98589 -16.51382 -16.38867 -15.80102 -15.75059 -15.66253 -15.42693 -14.83387 -14.76277 -14.31267 -14.25574 -14.10035 -13.82222 -13.68785 -13.56324 -13.51282 -13.28523 -12.93554 -12.77741 -12.55483 -12.45072 -12.33438 -12.09678 -11.89247 -11.84817 -11.60139 -11.56960 -11.17392 -10.49924 -10.25024 -10.10561 -9.62382 -9.42370 -8.51395 -6.01715 -0.62248 0.04078 1.15130 1.24575 1.34924 1.36455 1.45465 1.59613 1.88070 1.90586 2.30614 2.48865 2.56570 3.01527 3.14442 3.22079 3.54234 3.59348 3.79311 3.89845 3.98474 4.00148 4.12216 4.16281 4.22000 4.23070 4.31028 4.38446 4.52716 4.64516 4.75425 4.81652 4.87963 4.91741 5.05859 5.15982 5.23055 5.38779 5.39331 5.56089 5.68540 5.81264 5.90277 6.15433 6.44699 6.56273 6.79044 7.04182 7.41261 7.94144 8.65795 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.029389 B = 0.001884 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.513809 B =14861.340487 C =15444.625506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.506 5.506 3 C 0.069 3.931 4 C -0.180 4.180 5 C 0.529 3.471 6 O -0.563 6.563 7 N -0.670 5.670 8 C 0.091 3.909 9 C -0.053 4.053 10 C -0.121 4.121 11 C 0.507 3.493 12 O -0.530 6.530 13 O -0.333 6.333 14 C 0.072 3.928 15 C 0.439 3.561 16 O -0.614 6.614 17 N -0.559 5.559 18 C -0.335 4.335 19 H 0.086 0.914 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.050 4.050 27 C -0.081 4.081 28 C 0.123 3.877 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.417 0.583 37 H 0.143 0.857 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.400 0.600 41 H 0.280 0.720 42 H 0.147 0.853 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 18.516 12.782 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 N -0.225 5.225 3 C -0.057 4.057 4 C -0.221 4.221 5 C 0.320 3.680 6 O -0.441 6.441 7 N -0.320 5.320 8 C -0.005 4.005 9 C -0.074 4.074 10 C -0.123 4.123 11 C 0.354 3.646 12 O -0.421 6.421 13 O -0.248 6.248 14 C -0.006 4.006 15 C 0.225 3.775 16 O -0.501 6.501 17 N -0.197 5.197 18 C -0.464 4.464 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.070 4.070 27 C -0.100 4.100 28 C 0.025 3.975 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.258 0.742 37 H 0.161 0.839 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.234 0.766 41 H 0.090 0.910 42 H 0.165 0.835 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.100 18.782 13.522 26.594 hybrid contribution -0.287 -0.642 -2.019 2.138 sum -13.388 18.140 11.503 25.310 Atomic orbital electron populations 1.22975 0.85479 1.03443 1.02928 1.58980 1.09108 1.13482 1.40918 1.22307 1.04559 0.85411 0.93385 1.22488 0.93966 1.06323 0.99325 1.21094 0.89593 0.80434 0.76831 1.90790 1.47662 1.47515 1.58100 1.43950 1.21413 1.08824 1.57807 1.18047 0.95170 0.94197 0.93102 1.20941 0.93659 0.93685 0.99129 1.18843 1.01284 0.99745 0.92452 1.21537 0.76528 0.78005 0.88572 1.90827 1.57950 1.67755 1.25581 1.86585 1.51002 1.47697 1.39523 1.22558 0.97424 0.93660 0.86916 1.20047 0.86282 0.84775 0.86379 1.90526 1.66983 1.72752 1.19801 1.41754 1.33959 1.33034 1.10923 1.19757 1.14492 1.15401 0.96737 0.89601 1.26129 1.00716 0.99446 0.94824 1.69676 1.43629 1.39440 1.02884 0.84798 0.77243 0.77416 0.78450 1.19403 1.19604 1.19575 1.21636 0.97537 0.97313 0.90467 1.21081 0.95412 0.93004 1.00483 1.19011 0.95878 0.95834 0.86744 0.90855 0.89325 0.93663 0.87913 0.86284 0.85810 0.88218 0.74228 0.83936 0.87465 0.87449 0.76595 0.91031 0.83545 0.81384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 8.65 127.69 1.10 1.09 16 2 N -0.51 -5.88 4.84 -721.46 -3.49 -9.37 16 3 C 0.07 0.56 6.04 86.24 0.52 1.08 16 4 C -0.18 -1.95 5.41 29.67 0.16 -1.79 16 5 C 0.53 8.89 5.01 87.59 0.44 9.33 16 6 O -0.56 -13.52 17.88 -3.08 -0.06 -13.57 16 7 N -0.67 -9.83 3.75 -303.02 -1.14 -10.96 16 8 C 0.09 1.40 5.11 38.10 0.19 1.60 16 9 C -0.05 -1.01 9.51 22.62 0.22 -0.79 16 10 C -0.12 -2.75 5.88 -20.08 -0.12 -2.87 16 11 C 0.51 15.22 7.89 70.23 0.55 15.78 16 12 O -0.53 -17.57 16.13 19.78 0.32 -17.25 16 13 O -0.33 -11.63 8.99 -50.33 -0.45 -12.08 16 14 C 0.07 2.59 5.95 71.24 0.42 3.01 16 15 C 0.44 20.68 7.86 87.66 0.69 21.37 16 16 O -0.61 -33.52 16.08 15.72 0.25 -33.27 16 17 N -0.56 -28.00 5.29 -306.98 -1.62 -29.62 16 18 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 19 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 20 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 21 N -0.92 -48.05 13.05 21.66 0.28 -47.76 16 22 Si 1.00 41.36 29.55 68.60 2.03 43.39 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 26 C -0.05 -0.97 9.60 22.52 0.22 -0.75 16 27 C -0.08 -1.14 9.95 22.34 0.22 -0.92 16 28 C 0.12 1.72 4.31 38.58 0.17 1.88 16 29 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 30 H 0.09 0.87 8.10 -2.39 -0.02 0.85 16 31 H 0.05 0.65 3.63 -2.39 -0.01 0.64 16 32 H 0.10 0.66 7.88 -2.39 -0.02 0.64 16 33 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 1.07 7.32 -2.39 -0.02 1.05 16 36 H 0.42 5.41 8.95 -92.71 -0.83 4.58 16 37 H 0.14 2.71 7.65 -2.91 -0.02 2.69 16 38 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.40 18.90 7.90 -92.71 -0.73 18.16 16 41 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 42 H 0.15 3.11 7.59 -2.91 -0.02 3.09 16 43 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -71.81 366.40 1.73 -70.08 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.46 Total: 30.07 kcal Atomic # 6 Polarization: 24.28 SS G_CDS: 6.07 Total: 30.35 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -5.97 Total: -97.71 kcal Atomic # 8 Polarization: -76.24 SS G_CDS: 0.06 Total: -76.18 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -71.81 1.73 -70.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762904058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.920 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds