Wall clock time and date at job start Wed Apr 1 2020 05:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46535 * 110.99981 * 2 1 4 4 C 1.52592 * 110.49393 * 279.18592 * 3 2 1 5 5 C 1.50573 * 110.32787 * 43.85732 * 4 3 2 6 6 O 1.21301 * 120.27178 * 103.93761 * 5 4 3 7 7 N 1.34933 * 119.45458 * 283.92559 * 5 4 3 8 8 C 1.40364 * 118.42188 * 3.39438 * 7 5 4 9 9 C 1.38013 * 120.33548 * 229.86897 * 8 7 5 10 10 C 1.39889 * 119.74470 * 178.17343 * 9 8 7 11 11 C 1.47416 * 120.07408 * 180.02562 * 10 9 8 12 12 O 1.21628 * 120.00546 * 128.97622 * 11 10 9 13 13 N 1.34779 * 119.99514 * 308.97628 * 11 10 9 14 14 C 1.36909 * 120.00188 * 183.47019 * 13 11 10 15 15 H 1.08000 * 119.99896 * 325.96218 * 14 13 11 16 16 C 1.39012 * 120.00063 * 145.95058 * 14 13 11 17 17 N 1.31389 * 119.99825 * 154.90117 * 16 14 13 18 18 Si 1.86792 * 120.00250 * 334.90859 * 16 14 13 19 19 H 1.48499 * 109.47278 * 95.50032 * 18 16 14 20 20 H 1.48504 * 109.47125 * 215.50039 * 18 16 14 21 21 H 1.48500 * 109.47100 * 335.50205 * 18 16 14 22 22 C 1.46495 * 120.00235 * 3.47568 * 13 11 10 23 23 C 1.50713 * 109.47186 * 93.67597 * 22 13 11 24 24 O 1.20819 * 119.99866 * 0.02562 * 23 22 13 25 25 O 1.34225 * 119.99937 * 179.97438 * 23 22 13 26 26 C 1.39847 * 119.85596 * 359.97438 * 10 9 8 27 27 C 1.37694 * 120.13336 * 0.57846 * 26 10 9 28 28 C 1.39012 * 111.00158 * 234.08601 * 2 1 3 29 29 H 1.09006 * 109.46698 * 182.24754 * 1 2 3 30 30 H 1.09007 * 109.47001 * 302.24190 * 1 2 3 31 31 H 1.08996 * 109.47360 * 62.24877 * 1 2 3 32 32 H 1.08998 * 109.26889 * 39.44739 * 3 2 1 33 33 H 1.08999 * 109.26979 * 158.91896 * 3 2 1 34 34 H 1.08999 * 109.33158 * 164.12264 * 4 3 2 35 35 H 1.09004 * 109.32594 * 283.60021 * 4 3 2 36 36 H 0.97001 * 120.79152 * 183.40823 * 7 5 4 37 37 H 1.07994 * 120.12586 * 358.20029 * 9 8 7 38 38 H 0.96999 * 120.00434 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.47423 * 213.67470 * 22 13 11 40 40 H 1.08994 * 109.47270 * 333.68232 * 22 13 11 41 41 H 0.96701 * 117.00229 * 179.97438 * 25 23 22 42 42 H 1.07999 * 119.93082 * 180.30146 * 26 10 9 43 43 H 1.07998 * 119.93660 * 179.73805 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3680 0.0000 4 6 1.9726 1.9485 -1.4110 5 6 0.6687 1.6237 -2.0904 6 8 -0.1861 2.4756 -2.2124 7 7 0.4590 0.3772 -2.5626 8 6 1.4440 -0.5971 -2.3370 9 6 1.9112 -1.3706 -3.3802 10 6 2.9202 -2.3115 -3.1489 11 6 3.4250 -3.1411 -4.2579 12 8 4.6210 -3.2153 -4.4665 13 7 2.5612 -3.8173 -5.0409 14 6 3.0324 -4.6435 -6.0257 15 1 3.9397 -4.3908 -6.5543 16 6 2.3432 -5.8077 -6.3450 17 7 2.4635 -6.3348 -7.5425 18 14 1.2459 -6.6227 -5.0719 19 1 -0.1561 -6.1736 -5.2665 20 1 1.3193 -8.0978 -5.2266 21 1 1.7023 -6.2445 -3.7103 22 6 1.1180 -3.6682 -4.8383 23 6 0.5906 -2.5930 -5.7534 24 8 1.3431 -2.0114 -6.4985 25 8 -0.7151 -2.2824 -5.7412 26 6 3.4497 -2.4626 -1.8634 27 6 2.9716 -1.6961 -0.8243 28 6 1.9672 -0.7612 -1.0511 29 1 -0.3633 -1.0270 0.0403 30 1 -0.3633 0.5483 0.8693 31 1 -0.3634 0.4785 -0.9094 32 1 1.3813 1.9886 0.6537 33 1 3.0193 1.3598 0.3701 34 1 2.0918 3.0307 -1.3578 35 1 2.7951 1.5254 -1.9878 36 1 -0.3529 0.1596 -3.0466 37 1 1.4997 -1.2496 -4.3713 38 1 1.9824 -7.1470 -7.7656 39 1 0.6203 -4.6118 -5.0619 40 1 0.9232 -3.3912 -3.8023 41 1 -1.0064 -1.5858 -6.3455 42 1 4.2321 -3.1852 -1.6844 43 1 3.3799 -1.8184 0.1680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830918227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:58 Heat of formation + Delta-G solvation = -63.490278 kcal Electronic energy + Delta-G solvation = -32238.074925 eV Core-core repulsion = 27864.808810 eV Total energy + Delta-G solvation = -4373.266114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.01753 -40.35751 -39.15603 -38.34022 -36.64888 -35.89343 -35.16055 -34.88772 -32.43729 -31.74403 -30.52466 -29.43778 -28.24407 -26.27986 -25.69781 -24.26696 -22.87734 -21.94014 -21.50549 -20.87130 -19.48517 -18.00325 -17.67811 -17.49095 -17.30603 -16.97696 -16.72221 -16.32100 -15.99098 -15.69975 -15.61388 -15.24812 -14.87191 -14.34639 -14.21014 -13.70156 -13.57744 -13.39945 -13.33498 -13.03829 -12.88656 -12.84972 -12.57120 -12.40196 -12.30571 -12.09739 -11.87102 -11.60191 -11.51125 -11.17333 -11.07529 -10.72751 -10.54711 -10.28408 -10.23986 -10.09797 -9.38992 -9.12976 -8.91494 -8.46869 -8.41919 -8.14921 -6.62878 -4.13968 0.84491 1.13199 2.16573 2.50426 2.79954 2.82424 2.95799 3.07367 3.09332 3.37169 3.46502 3.71036 3.90868 4.07208 4.19318 4.49015 4.62103 4.66898 4.73716 4.98368 5.06187 5.08576 5.14979 5.21684 5.25800 5.32109 5.35999 5.42650 5.49414 5.50874 5.62648 5.68097 5.76240 5.94450 6.09090 6.36938 6.44482 6.50569 6.57890 6.72799 6.76774 7.13218 7.23620 7.72325 7.99637 8.16417 8.24835 8.69202 9.03732 9.41752 10.48116 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.004104 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.314377 B = 6821.177144 C = 7432.296104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.502 5.502 3 C 0.070 3.930 4 C -0.182 4.182 5 C 0.531 3.469 6 O -0.531 6.531 7 N -0.675 5.675 8 C 0.099 3.901 9 C -0.113 4.113 10 C -0.084 4.084 11 C 0.507 3.493 12 O -0.539 6.539 13 N -0.434 5.434 14 C -0.314 4.314 15 H 0.115 0.885 16 C 0.062 3.938 17 N -0.841 5.841 18 Si 0.854 3.146 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.255 1.255 22 C 0.093 3.907 23 C 0.454 3.546 24 O -0.483 6.483 25 O -0.525 6.525 26 C -0.075 4.075 27 C -0.078 4.078 28 C 0.080 3.920 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.412 0.588 37 H 0.129 0.871 38 H 0.278 0.722 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.403 0.597 42 H 0.140 0.860 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 10.298 15.245 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 N -0.221 5.221 3 C -0.056 4.056 4 C -0.223 4.223 5 C 0.320 3.680 6 O -0.406 6.406 7 N -0.325 5.325 8 C 0.004 3.996 9 C -0.134 4.134 10 C -0.089 4.089 11 C 0.297 3.703 12 O -0.420 6.420 13 N -0.155 5.155 14 C -0.441 4.441 15 H 0.133 0.867 16 C -0.146 4.146 17 N -0.475 5.475 18 Si 0.681 3.319 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.179 1.179 22 C -0.033 4.033 23 C 0.294 3.706 24 O -0.368 6.368 25 O -0.338 6.338 26 C -0.094 4.094 27 C -0.098 4.098 28 C -0.017 4.017 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.252 0.748 37 H 0.147 0.853 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.261 0.739 42 H 0.158 0.842 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.754 10.307 15.482 19.469 hybrid contribution -1.633 0.061 -1.137 1.991 sum -7.388 10.367 14.345 19.179 Atomic orbital electron populations 1.22993 0.85981 1.03518 1.02650 1.58884 1.08773 1.12237 1.42169 1.22129 1.02877 0.86921 0.93699 1.22411 0.95761 1.04986 0.99174 1.20636 0.89131 0.80845 0.77369 1.90781 1.46347 1.46625 1.56876 1.43997 1.21489 1.09188 1.57814 1.18170 0.94363 0.93673 0.93404 1.21336 0.96725 0.97149 0.98190 1.20297 0.95888 0.97060 0.95627 1.17918 0.86552 0.83450 0.82415 1.90711 1.14719 1.65003 1.71549 1.43290 1.01042 1.40560 1.30561 1.19091 1.12809 1.01063 1.11151 0.86728 1.25350 0.97213 0.96452 0.95632 1.69778 1.39980 1.20573 1.17215 0.87293 0.80070 0.80503 0.84080 1.19628 1.20221 1.17852 1.21666 0.86217 0.97106 0.98269 1.24443 0.79599 0.83442 0.83128 1.90762 1.57939 1.50265 1.37862 1.84573 1.28119 1.57607 1.63454 1.21199 0.98829 0.98849 0.90564 1.20821 0.95599 0.93734 0.99609 1.18621 0.98465 0.97972 0.86661 0.90753 0.90938 0.92532 0.89448 0.88571 0.87291 0.88416 0.74842 0.85332 0.91114 0.87375 0.87169 0.73919 0.84185 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 8.71 60.06 0.52 0.48 16 2 N -0.50 -4.95 4.84 -179.37 -0.87 -5.82 16 3 C 0.07 0.58 6.04 -4.23 -0.03 0.55 16 4 C -0.18 -1.75 5.41 -28.15 -0.15 -1.90 16 5 C 0.53 6.48 5.07 -10.98 -0.06 6.43 16 6 O -0.53 -8.00 17.92 5.54 0.10 -7.90 16 7 N -0.67 -7.84 3.66 -9.74 -0.04 -7.87 16 8 C 0.10 1.25 5.11 -83.45 -0.43 0.83 16 9 C -0.11 -1.72 7.57 -39.05 -0.30 -2.02 16 10 C -0.08 -1.45 4.80 -104.94 -0.50 -1.96 16 11 C 0.51 11.47 7.14 -12.52 -0.09 11.38 16 12 O -0.54 -14.12 16.86 5.25 0.09 -14.03 16 13 N -0.43 -10.15 1.74 -117.32 -0.20 -10.35 16 14 C -0.31 -8.58 9.34 -15.00 -0.14 -8.72 16 15 H 0.12 3.57 7.80 -52.49 -0.41 3.16 16 16 C 0.06 1.61 5.29 -17.45 -0.09 1.52 16 17 N -0.84 -23.20 13.96 55.50 0.77 -22.43 16 18 Si 0.85 18.48 25.08 -169.99 -4.26 14.22 16 19 H -0.27 -5.37 6.65 56.52 0.38 -5.00 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.25 -5.29 7.11 56.52 0.40 -4.89 16 22 C 0.09 1.81 4.48 -5.19 -0.02 1.79 16 23 C 0.45 8.41 6.04 36.01 0.22 8.63 16 24 O -0.48 -10.67 16.50 -18.74 -0.31 -10.98 16 25 O -0.53 -7.24 13.42 -39.24 -0.53 -7.77 16 26 C -0.07 -1.05 9.72 -39.18 -0.38 -1.43 16 27 C -0.08 -0.89 9.95 -39.47 -0.39 -1.28 16 28 C 0.08 0.91 4.34 -83.71 -0.36 0.55 16 29 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.07 0.61 8.01 -51.92 -0.42 0.19 16 31 H 0.06 0.61 3.59 -51.93 -0.19 0.42 16 32 H 0.09 0.62 7.82 -51.93 -0.41 0.21 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.00 7.32 -51.93 -0.38 0.62 16 36 H 0.41 4.38 8.95 -40.82 -0.37 4.01 16 37 H 0.13 2.12 4.44 -52.49 -0.23 1.89 16 38 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.11 2.17 2.87 -51.93 -0.15 2.02 16 40 H 0.11 1.77 5.77 -51.93 -0.30 1.47 16 41 H 0.40 3.77 9.10 45.56 0.41 4.18 16 42 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -34.23 348.34 -5.90 -40.13 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -3.70 Total: 12.70 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: -2.20 Total: 14.85 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.33 Total: -46.47 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.65 Total: -40.67 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -4.26 Total: 14.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.23 -5.90 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830918227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.356 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds