Wall clock time and date at job start Wed Apr 1 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46535 * 110.99981 * 2 1 4 4 C 1.52592 * 110.49393 * 279.18592 * 3 2 1 5 5 C 1.50573 * 110.32787 * 43.85732 * 4 3 2 6 6 O 1.21301 * 120.27178 * 103.93761 * 5 4 3 7 7 N 1.34933 * 119.45458 * 283.92559 * 5 4 3 8 8 C 1.40364 * 118.42188 * 3.39438 * 7 5 4 9 9 C 1.38013 * 120.33548 * 229.86897 * 8 7 5 10 10 C 1.39889 * 119.74470 * 178.17343 * 9 8 7 11 11 C 1.47416 * 120.07408 * 180.02562 * 10 9 8 12 12 O 1.21628 * 120.00546 * 128.97622 * 11 10 9 13 13 N 1.34779 * 119.99514 * 308.97628 * 11 10 9 14 14 C 1.36909 * 120.00188 * 183.47019 * 13 11 10 15 15 H 1.08000 * 119.99896 * 325.96218 * 14 13 11 16 16 C 1.39012 * 120.00063 * 145.95058 * 14 13 11 17 17 N 1.31389 * 119.99825 * 154.90117 * 16 14 13 18 18 Si 1.86792 * 120.00250 * 334.90859 * 16 14 13 19 19 H 1.48499 * 109.47278 * 95.50032 * 18 16 14 20 20 H 1.48504 * 109.47125 * 215.50039 * 18 16 14 21 21 H 1.48500 * 109.47100 * 335.50205 * 18 16 14 22 22 C 1.46495 * 120.00235 * 3.47568 * 13 11 10 23 23 C 1.50713 * 109.47186 * 93.67597 * 22 13 11 24 24 O 1.20819 * 119.99866 * 0.02562 * 23 22 13 25 25 O 1.34225 * 119.99937 * 179.97438 * 23 22 13 26 26 C 1.39847 * 119.85596 * 359.97438 * 10 9 8 27 27 C 1.37694 * 120.13336 * 0.57846 * 26 10 9 28 28 C 1.39012 * 111.00158 * 234.08601 * 2 1 3 29 29 H 1.09006 * 109.46698 * 182.24754 * 1 2 3 30 30 H 1.09007 * 109.47001 * 302.24190 * 1 2 3 31 31 H 1.08996 * 109.47360 * 62.24877 * 1 2 3 32 32 H 1.08998 * 109.26889 * 39.44739 * 3 2 1 33 33 H 1.08999 * 109.26979 * 158.91896 * 3 2 1 34 34 H 1.08999 * 109.33158 * 164.12264 * 4 3 2 35 35 H 1.09004 * 109.32594 * 283.60021 * 4 3 2 36 36 H 0.97001 * 120.79152 * 183.40823 * 7 5 4 37 37 H 1.07994 * 120.12586 * 358.20029 * 9 8 7 38 38 H 0.96999 * 120.00434 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.47423 * 213.67470 * 22 13 11 40 40 H 1.08994 * 109.47270 * 333.68232 * 22 13 11 41 41 H 0.96701 * 117.00229 * 179.97438 * 25 23 22 42 42 H 1.07999 * 119.93082 * 180.30146 * 26 10 9 43 43 H 1.07998 * 119.93660 * 179.73805 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3680 0.0000 4 6 1.9726 1.9485 -1.4110 5 6 0.6687 1.6237 -2.0904 6 8 -0.1861 2.4756 -2.2124 7 7 0.4590 0.3772 -2.5626 8 6 1.4440 -0.5971 -2.3370 9 6 1.9112 -1.3706 -3.3802 10 6 2.9202 -2.3115 -3.1489 11 6 3.4250 -3.1411 -4.2579 12 8 4.6210 -3.2153 -4.4665 13 7 2.5612 -3.8173 -5.0409 14 6 3.0324 -4.6435 -6.0257 15 1 3.9397 -4.3908 -6.5543 16 6 2.3432 -5.8077 -6.3450 17 7 2.4635 -6.3348 -7.5425 18 14 1.2459 -6.6227 -5.0719 19 1 -0.1561 -6.1736 -5.2665 20 1 1.3193 -8.0978 -5.2266 21 1 1.7023 -6.2445 -3.7103 22 6 1.1180 -3.6682 -4.8383 23 6 0.5906 -2.5930 -5.7534 24 8 1.3431 -2.0114 -6.4985 25 8 -0.7151 -2.2824 -5.7412 26 6 3.4497 -2.4626 -1.8634 27 6 2.9716 -1.6961 -0.8243 28 6 1.9672 -0.7612 -1.0511 29 1 -0.3633 -1.0270 0.0403 30 1 -0.3633 0.5483 0.8693 31 1 -0.3634 0.4785 -0.9094 32 1 1.3813 1.9886 0.6537 33 1 3.0193 1.3598 0.3701 34 1 2.0918 3.0307 -1.3578 35 1 2.7951 1.5254 -1.9878 36 1 -0.3529 0.1596 -3.0466 37 1 1.4997 -1.2496 -4.3713 38 1 1.9824 -7.1470 -7.7656 39 1 0.6203 -4.6118 -5.0619 40 1 0.9232 -3.3912 -3.8023 41 1 -1.0064 -1.5858 -6.3455 42 1 4.2321 -3.1852 -1.6844 43 1 3.3799 -1.8184 0.1680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830918227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:57 Heat of formation + Delta-G solvation = -91.423618 kcal Electronic energy + Delta-G solvation = -32239.286205 eV Core-core repulsion = 27864.808810 eV Total energy + Delta-G solvation = -4374.477395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.97912 -41.84678 -40.56100 -39.57832 -37.69398 -37.35273 -36.73604 -36.07782 -34.34046 -32.63112 -31.63454 -30.48930 -29.86209 -27.62837 -26.74257 -25.49498 -23.94569 -23.41094 -22.65556 -21.85625 -20.79666 -19.41246 -19.30331 -18.78664 -18.61268 -18.10324 -17.88034 -17.60202 -17.41833 -16.91273 -16.77864 -16.47254 -16.04500 -15.84316 -15.35705 -15.18210 -14.71467 -14.65330 -14.54708 -14.24681 -14.22398 -14.08122 -13.83966 -13.67938 -13.48547 -13.28437 -12.88371 -12.74362 -12.67286 -12.49272 -12.41261 -12.28953 -11.98087 -11.80133 -11.58498 -11.26798 -11.11634 -10.67220 -10.15060 -10.06771 -9.51586 -9.34873 -8.61852 -6.21830 -0.27350 0.06309 1.02145 1.11949 1.21106 1.29442 1.42640 1.53874 1.87011 1.94325 2.10198 2.35545 2.58330 2.66439 2.89399 3.21733 3.49753 3.58970 3.75818 3.84484 3.93105 3.94871 4.04300 4.20223 4.26658 4.33844 4.35907 4.45494 4.55900 4.67611 4.73991 4.85844 4.90543 4.98820 5.10338 5.25320 5.39197 5.44201 5.48850 5.57725 5.75943 5.83584 5.94583 6.22806 6.30715 6.74119 6.79008 6.87860 7.07255 7.58461 8.55134 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.004104 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.314377 B = 6821.177144 C = 7432.296104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.498 5.498 3 C 0.070 3.930 4 C -0.181 4.181 5 C 0.530 3.470 6 O -0.562 6.562 7 N -0.670 5.670 8 C 0.107 3.893 9 C -0.114 4.114 10 C -0.110 4.110 11 C 0.506 3.494 12 O -0.593 6.593 13 N -0.445 5.445 14 C -0.340 4.340 15 H 0.047 0.953 16 C 0.016 3.984 17 N -0.894 5.894 18 Si 0.924 3.076 19 H -0.232 1.232 20 H -0.274 1.274 21 H -0.239 1.239 22 C 0.089 3.911 23 C 0.466 3.534 24 O -0.530 6.530 25 O -0.502 6.502 26 C -0.069 4.069 27 C -0.059 4.059 28 C 0.100 3.900 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.415 0.585 37 H 0.113 0.887 38 H 0.285 0.715 39 H 0.108 0.892 40 H 0.149 0.851 41 H 0.426 0.574 42 H 0.142 0.858 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.086 11.386 19.727 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 N -0.217 5.217 3 C -0.056 4.056 4 C -0.222 4.222 5 C 0.321 3.679 6 O -0.440 6.440 7 N -0.320 5.320 8 C 0.012 3.988 9 C -0.135 4.135 10 C -0.114 4.114 11 C 0.297 3.703 12 O -0.477 6.477 13 N -0.166 5.166 14 C -0.467 4.467 15 H 0.065 0.935 16 C -0.189 4.189 17 N -0.530 5.530 18 Si 0.745 3.255 19 H -0.158 1.158 20 H -0.200 1.200 21 H -0.162 1.162 22 C -0.035 4.035 23 C 0.307 3.693 24 O -0.419 6.419 25 O -0.315 6.315 26 C -0.089 4.089 27 C -0.078 4.078 28 C 0.003 3.997 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.111 0.889 36 H 0.256 0.744 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.166 0.834 41 H 0.288 0.712 42 H 0.160 0.840 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.383 11.420 19.974 24.488 hybrid contribution -0.850 -0.076 -2.494 2.636 sum -9.233 11.344 17.480 22.792 Atomic orbital electron populations 1.23035 0.85603 1.03831 1.02827 1.59008 1.09044 1.13085 1.40563 1.22312 1.04587 0.85794 0.92880 1.22498 0.93749 1.06229 0.99735 1.21103 0.89612 0.80339 0.76856 1.90772 1.47640 1.47355 1.58198 1.43991 1.21321 1.09032 1.57642 1.18086 0.94347 0.93188 0.93224 1.21087 0.96582 0.97585 0.98242 1.19832 0.98351 0.98445 0.94808 1.18805 0.85898 0.82676 0.82915 1.90656 1.17148 1.66764 1.73117 1.43242 1.03033 1.40265 1.30021 1.18571 1.11881 1.03438 1.12844 0.93519 1.26171 0.99092 0.96120 0.97474 1.69892 1.42217 1.21386 1.19480 0.86190 0.79453 0.78885 0.80961 1.15760 1.19995 1.16150 1.21788 0.83637 0.97502 1.00609 1.24123 0.80535 0.82667 0.81995 1.90762 1.59463 1.51963 1.39679 1.84483 1.25074 1.58240 1.63748 1.21286 0.98514 0.99265 0.89842 1.21061 0.94574 0.92047 1.00090 1.18818 0.97225 0.97233 0.86451 0.90556 0.89303 0.93717 0.87694 0.86324 0.85805 0.88943 0.74439 0.86920 0.90516 0.87472 0.83409 0.71175 0.83999 0.80615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 8.71 127.69 1.11 1.03 16 2 N -0.50 -7.36 4.84 -721.41 -3.49 -10.86 16 3 C 0.07 0.81 6.04 86.24 0.52 1.33 16 4 C -0.18 -2.85 5.41 29.67 0.16 -2.69 16 5 C 0.53 11.57 5.07 87.59 0.44 12.02 16 6 O -0.56 -15.82 17.92 -3.09 -0.06 -15.87 16 7 N -0.67 -13.90 3.66 -303.01 -1.11 -15.00 16 8 C 0.11 2.41 5.11 38.10 0.19 2.61 16 9 C -0.11 -3.33 7.57 22.62 0.17 -3.16 16 10 C -0.11 -3.74 4.80 -20.07 -0.10 -3.84 16 11 C 0.51 23.91 7.14 86.66 0.62 24.53 16 12 O -0.59 -33.35 16.86 -4.12 -0.07 -33.42 16 13 N -0.45 -21.67 1.74 -643.33 -1.12 -22.79 16 14 C -0.34 -19.95 9.34 84.09 0.79 -19.17 16 15 H 0.05 3.27 7.80 -2.91 -0.02 3.25 16 16 C 0.02 0.85 5.29 84.94 0.45 1.30 16 17 N -0.89 -52.02 13.96 21.67 0.30 -51.72 16 18 Si 0.92 37.82 25.08 68.60 1.72 39.54 16 19 H -0.23 -8.15 6.65 99.48 0.66 -7.49 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 21 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 22 C 0.09 3.39 4.48 85.64 0.38 3.78 16 23 C 0.47 17.03 6.04 71.24 0.43 17.46 16 24 O -0.53 -24.22 16.50 21.98 0.36 -23.86 16 25 O -0.50 -12.62 13.42 -51.37 -0.69 -13.31 16 26 C -0.07 -1.80 9.72 22.53 0.22 -1.58 16 27 C -0.06 -1.08 9.95 22.34 0.22 -0.85 16 28 C 0.10 1.88 4.34 38.58 0.17 2.04 16 29 H 0.08 1.12 8.13 -2.38 -0.02 1.10 16 30 H 0.09 1.07 8.01 -2.38 -0.02 1.05 16 31 H 0.04 0.80 3.59 -2.39 -0.01 0.79 16 32 H 0.10 0.94 7.82 -2.39 -0.02 0.92 16 33 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.60 7.32 -2.38 -0.02 1.58 16 36 H 0.42 7.91 8.95 -92.71 -0.83 7.08 16 37 H 0.11 3.69 4.44 -2.91 -0.01 3.68 16 38 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.11 4.07 2.87 -2.39 -0.01 4.06 16 40 H 0.15 4.41 5.77 -2.39 -0.01 4.39 16 41 H 0.43 6.92 9.10 -74.06 -0.67 6.25 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -83.39 348.34 1.21 -82.18 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.42 Total: 30.31 kcal Atomic # 6 Polarization: 29.01 SS G_CDS: 5.78 Total: 34.80 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -5.42 Total: -100.37 kcal Atomic # 8 Polarization: -86.01 SS G_CDS: -0.45 Total: -86.46 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 1.72 Total: 39.54 kcal Total: -83.39 1.21 -82.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830918227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.241 kcal (2) G-P(sol) polarization free energy of solvation -83.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds